Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12b15r
         (669 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    25   0.49 
DQ855487-1|ABH88174.1|  125|Apis mellifera chemosensory protein ...    23   2.0  
AJ973402-1|CAJ01449.1|  125|Apis mellifera hypothetical protein ...    23   2.0  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    23   2.6  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   2.6  
DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex det...    21   8.0  
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    21   8.0  

>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 25.4 bits (53), Expect = 0.49
 Identities = 9/32 (28%), Positives = 17/32 (53%)
 Frame = +2

Query: 356 TVNKKKSCKRNRLFNVIQNVNHNLYGSYRKIH 451
           T++   +   N   N   N N+N Y +Y+K++
Sbjct: 322 TIHNNNNYNNNNYNNNYNNYNNNNYNNYKKLY 353


>DQ855487-1|ABH88174.1|  125|Apis mellifera chemosensory protein 6
           protein.
          Length = 125

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +3

Query: 438 TAKYINHDKDKILYNSRLL 494
           T KY + D D+IL N R+L
Sbjct: 22  TTKYDDMDIDRILQNGRIL 40


>AJ973402-1|CAJ01449.1|  125|Apis mellifera hypothetical protein
           protein.
          Length = 125

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +3

Query: 438 TAKYINHDKDKILYNSRLL 494
           T KY + D D+IL N R+L
Sbjct: 22  TTKYDDMDIDRILQNGRIL 40


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -3

Query: 514 RKGNFYFNNRELYKILS 464
           RK NFY NN+++ K L+
Sbjct: 304 RKVNFYPNNQDIEKFLN 320


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = +2

Query: 605 YIGQQT*TIKYILYTQWYLFN 667
           Y+G +   I  ILY  WY  N
Sbjct: 797 YVGSEDSVIPRILYLTWYSSN 817


>DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 7/22 (31%), Positives = 14/22 (63%)
 Frame = +2

Query: 386 NRLFNVIQNVNHNLYGSYRKIH 451
           N+  +   N N+N Y +Y+K++
Sbjct: 87  NKTIHNNNNYNNNNYNNYKKLY 108


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 9/32 (28%), Positives = 17/32 (53%)
 Frame = +2

Query: 356 TVNKKKSCKRNRLFNVIQNVNHNLYGSYRKIH 451
           T++   +   N   N   N N+N Y +Y+K++
Sbjct: 89  TIHNNNNYNNNNYNNY--NYNNNNYNNYKKLY 118


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,969
Number of Sequences: 438
Number of extensions: 3992
Number of successful extensions: 15
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20221290
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)