Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12b15f
         (640 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2 ...    27   0.13 
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    23   2.8  
AJ876407-1|CAI45288.1|  590|Tribolium castaneum phosphatase prot...    22   5.0  

>AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2
           protein protein.
          Length = 301

 Score = 27.1 bits (57), Expect = 0.13
 Identities = 16/57 (28%), Positives = 27/57 (47%)
 Frame = -2

Query: 354 WNPVSKSSRWPVDPSCQHRLWCRSLQPSLPCQLRSPVTYSSSPSMLRPEWVNGKVRS 184
           W+P S  S + ++   QHR WC S QP L     +   Y++ P     ++++    S
Sbjct: 219 WSPASIDS-FTLE---QHRSWCSSSQPVLSTTNSTTNCYNNYPYYSNMDYLSSSTMS 271


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 5/16 (31%), Positives = 12/16 (75%)
 Frame = +1

Query: 7   MNTIFYCNFKVYNIHY 54
           ++ +FYC F ++ +H+
Sbjct: 81  VHLLFYCPFIIFTVHF 96



 Score = 22.2 bits (45), Expect = 3.8
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +1

Query: 19  FYCNFKVYNIHY*QLL*IENF 81
           FYC F ++ +H   LL I +F
Sbjct: 149 FYCAFIIFTVHLLFLLCIYHF 169



 Score = 21.0 bits (42), Expect = 8.7
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +1

Query: 7   MNTIFYCNFKVYNIHY*QLL*IENF 81
           M+ +F C F  +N+H   LL ++ F
Sbjct: 178 MHLLFCCAFIFFNMHLLFLLCLDYF 202


>AJ876407-1|CAI45288.1|  590|Tribolium castaneum phosphatase
           protein.
          Length = 590

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 8/24 (33%), Positives = 12/24 (50%)
 Frame = -3

Query: 341 RRARAGQWIRRASTACGAVLFNHP 270
           +R  AG W    ++ACG     +P
Sbjct: 135 QRLSAGDWFTSRTSACGLFSVCYP 158


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 150,324
Number of Sequences: 336
Number of extensions: 3169
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 16501678
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)