BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fmgV12b15f (640 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC16G5.15c |fkh2||fork head transcription factor Fkh2 |Schizos... 30 0.32 SPBC1711.11 |||autophagy associated protein |Schizosaccharomyces... 29 0.57 SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomy... 27 2.3 SPAC13G6.06c |||glycine cleavage complex subunit P|Schizosacchar... 26 5.3 SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb... 25 9.2 SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 25 9.2 >SPBC16G5.15c |fkh2||fork head transcription factor Fkh2 |Schizosaccharomyces pombe|chr 2|||Manual Length = 642 Score = 29.9 bits (64), Expect = 0.32 Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 1/40 (2%) Frame = +3 Query: 387 TLPSQAPSAQVQSVIQP-NQQSVIQTASNIQSVQIPKGNV 503 T SQ SA V + P N Q++++ S Q +Q+P+ NV Sbjct: 599 TPTSQTESASVPQIANPPNSQNLVKEKSPQQYIQVPQSNV 638 >SPBC1711.11 |||autophagy associated protein |Schizosaccharomyces pombe|chr 2|||Manual Length = 390 Score = 29.1 bits (62), Expect = 0.57 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 1/61 (1%) Frame = +3 Query: 420 QSVIQPNQQSVIQTASNIQSVQIPKGNVILVSKPS-SVIHTTQGTLQTLQIKPEPNTLVN 596 +S+I+ +Q V Q Q VQ N S+ + + T QT ++KP PNT + Sbjct: 247 KSLIKSREQKVKQFEHFQQIVQSNSNNPDQSSRSDPNFVEATPVVQQTPELKPSPNTTIR 306 Query: 597 T 599 T Sbjct: 307 T 307 >SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomyces pombe|chr 2|||Manual Length = 786 Score = 27.1 bits (57), Expect = 2.3 Identities = 22/83 (26%), Positives = 35/83 (42%) Frame = +3 Query: 378 VQLTLPSQAPSAQVQSVIQPNQQSVIQTASNIQSVQIPKGNVILVSKPSSVIHTTQGTLQ 557 V LT P + S SV+ V++ A + ++ P GN + + T T + Sbjct: 105 VSLTRPLKKSSTTNLSVLG---NLVLKVAPS--KIRAPAGNHSSTTANRTTSTPTTTTAR 159 Query: 558 TLQIKPEPNTLVNTQGQSCSDES 626 T + P P NT QS S+ + Sbjct: 160 TTRTTPRPTATTNTSNQSTSNST 182 >SPAC13G6.06c |||glycine cleavage complex subunit P|Schizosaccharomyces pombe|chr 1|||Manual Length = 1017 Score = 25.8 bits (54), Expect = 5.3 Identities = 11/29 (37%), Positives = 15/29 (51%) Frame = +1 Query: 418 CSLLFNLINNQ*YKQHPISNLYRYQREML 504 CSL N Y QHP+ N Y + E++ Sbjct: 522 CSLPENFRRTTLYLQHPVFNRYHSETELM 550 >SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 2685 Score = 25.0 bits (52), Expect = 9.2 Identities = 10/24 (41%), Positives = 13/24 (54%) Frame = -2 Query: 297 LWCRSLQPSLPCQLRSPVTYSSSP 226 LWC S QP+L R T++ P Sbjct: 1249 LWCNSYQPALSDMTRIMDTFTKMP 1272 >SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual Length = 1611 Score = 25.0 bits (52), Expect = 9.2 Identities = 14/47 (29%), Positives = 21/47 (44%) Frame = +3 Query: 393 PSQAPSAQVQSVIQPNQQSVIQTASNIQSVQIPKGNVILVSKPSSVI 533 P APS+++ S+ P+ + S I V P V KPS + Sbjct: 1065 PVPAPSSEIPSIPAPSGAPPVPAPSGIPPVPKPSVAAPPVPKPSVAV 1111 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,557,004 Number of Sequences: 5004 Number of extensions: 50870 Number of successful extensions: 121 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 119 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 121 length of database: 2,362,478 effective HSP length: 70 effective length of database: 2,012,198 effective search space used: 285732116 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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