Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12b15f
         (640 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16G5.15c |fkh2||fork head transcription factor Fkh2 |Schizos...    30   0.32 
SPBC1711.11 |||autophagy associated protein |Schizosaccharomyces...    29   0.57 
SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomy...    27   2.3  
SPAC13G6.06c |||glycine cleavage complex subunit P|Schizosacchar...    26   5.3  
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb...    25   9.2  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    25   9.2  

>SPBC16G5.15c |fkh2||fork head transcription factor Fkh2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 642

 Score = 29.9 bits (64), Expect = 0.32
 Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = +3

Query: 387 TLPSQAPSAQVQSVIQP-NQQSVIQTASNIQSVQIPKGNV 503
           T  SQ  SA V  +  P N Q++++  S  Q +Q+P+ NV
Sbjct: 599 TPTSQTESASVPQIANPPNSQNLVKEKSPQQYIQVPQSNV 638


>SPBC1711.11 |||autophagy associated protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 390

 Score = 29.1 bits (62), Expect = 0.57
 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
 Frame = +3

Query: 420 QSVIQPNQQSVIQTASNIQSVQIPKGNVILVSKPS-SVIHTTQGTLQTLQIKPEPNTLVN 596
           +S+I+  +Q V Q     Q VQ    N    S+   + +  T    QT ++KP PNT + 
Sbjct: 247 KSLIKSREQKVKQFEHFQQIVQSNSNNPDQSSRSDPNFVEATPVVQQTPELKPSPNTTIR 306

Query: 597 T 599
           T
Sbjct: 307 T 307


>SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 786

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 22/83 (26%), Positives = 35/83 (42%)
 Frame = +3

Query: 378 VQLTLPSQAPSAQVQSVIQPNQQSVIQTASNIQSVQIPKGNVILVSKPSSVIHTTQGTLQ 557
           V LT P +  S    SV+      V++ A +   ++ P GN    +   +    T  T +
Sbjct: 105 VSLTRPLKKSSTTNLSVLG---NLVLKVAPS--KIRAPAGNHSSTTANRTTSTPTTTTAR 159

Query: 558 TLQIKPEPNTLVNTQGQSCSDES 626
           T +  P P    NT  QS S+ +
Sbjct: 160 TTRTTPRPTATTNTSNQSTSNST 182


>SPAC13G6.06c |||glycine cleavage complex subunit
           P|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1017

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +1

Query: 418 CSLLFNLINNQ*YKQHPISNLYRYQREML 504
           CSL  N      Y QHP+ N Y  + E++
Sbjct: 522 CSLPENFRRTTLYLQHPVFNRYHSETELM 550


>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 2685

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -2

Query: 297  LWCRSLQPSLPCQLRSPVTYSSSP 226
            LWC S QP+L    R   T++  P
Sbjct: 1249 LWCNSYQPALSDMTRIMDTFTKMP 1272


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 14/47 (29%), Positives = 21/47 (44%)
 Frame = +3

Query: 393  PSQAPSAQVQSVIQPNQQSVIQTASNIQSVQIPKGNVILVSKPSSVI 533
            P  APS+++ S+  P+    +   S I  V  P      V KPS  +
Sbjct: 1065 PVPAPSSEIPSIPAPSGAPPVPAPSGIPPVPKPSVAAPPVPKPSVAV 1111


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,557,004
Number of Sequences: 5004
Number of extensions: 50870
Number of successful extensions: 121
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)