Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12b15f
         (640 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1112 + 34606171-34606266,34607170-34607231,34607932-346080...    29   2.4  
09_04_0202 - 15544498-15545037,15546043-15546449,15546874-155469...    29   3.1  
05_05_0043 + 21816393-21816749                                         29   3.1  
06_02_0215 - 13145544-13146482,13148797-13149297                       28   7.2  

>01_06_1112 +
           34606171-34606266,34607170-34607231,34607932-34608019,
           34608104-34608165,34608246-34608342,34608499-34608930,
           34609042-34610061,34610151-34610282,34610354-34610470,
           34610982-34611062,34611321-34611447,34611547-34611592,
           34611663-34611708
          Length = 801

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 20/59 (33%), Positives = 28/59 (47%)
 Frame = +3

Query: 381 QLTLPSQAPSAQVQSVIQPNQQSVIQTASNIQSVQIPKGNVILVSKPSSVIHTTQGTLQ 557
           Q   P  A SAQ+ +       SV QTA   +SVQ  + +++ V+KP      T  T Q
Sbjct: 321 QSVAPPMAHSAQLYASQSNINSSVSQTAPTRESVQHGRVHMVSVAKPPVSTQPTTSTNQ 379


>09_04_0202 -
           15544498-15545037,15546043-15546449,15546874-15546977,
           15547580-15547788,15548092-15549428,15551680-15551941
          Length = 952

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
 Frame = -2

Query: 288 RSLQPSLPCQLRSPVTYSSSPSMLRPEWVNGKVRSSHVNCE-KTRHWRRPMILYASSQYG 112
           RS  P +     SP  YS+S        +N   +   + C  KT  WR  + +Y  + YG
Sbjct: 118 RSQVPVISFTATSPSLYSASLPYFVRATLNDSAQVQSIACLIKTYGWREVVPIYEDTDYG 177

Query: 111 R 109
           R
Sbjct: 178 R 178


>05_05_0043 + 21816393-21816749
          Length = 118

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = -2

Query: 276 PSLPCQLRSPVTYSSSPSMLRPEWVNGKVRSSHVNC-EKTRHWRRP 142
           PSLPC+ RS  T ++    +  + V G++R     C E+    RRP
Sbjct: 13  PSLPCRTRSATT-AALGGQIEDDGVGGQIRRRRSRCGEREAAARRP 57


>06_02_0215 - 13145544-13146482,13148797-13149297
          Length = 479

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = -2

Query: 255 RSPVTYSSSPSMLRPEWVNGKVRSSHVNCEKTRHWRRPMILYASSQYGR 109
           R+  +Y +   ML  E        +  +C  TR +R P +LY S+ YG+
Sbjct: 271 RASYSYDAEEGMLEEE------SGAFTSCVGTRWFRAPELLYGSTNYGQ 313


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,687,386
Number of Sequences: 37544
Number of extensions: 344143
Number of successful extensions: 797
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 779
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 797
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)