BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fmgV12b15f (640 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 01_06_1112 + 34606171-34606266,34607170-34607231,34607932-346080... 29 2.4 09_04_0202 - 15544498-15545037,15546043-15546449,15546874-155469... 29 3.1 05_05_0043 + 21816393-21816749 29 3.1 06_02_0215 - 13145544-13146482,13148797-13149297 28 7.2 >01_06_1112 + 34606171-34606266,34607170-34607231,34607932-34608019, 34608104-34608165,34608246-34608342,34608499-34608930, 34609042-34610061,34610151-34610282,34610354-34610470, 34610982-34611062,34611321-34611447,34611547-34611592, 34611663-34611708 Length = 801 Score = 29.5 bits (63), Expect = 2.4 Identities = 20/59 (33%), Positives = 28/59 (47%) Frame = +3 Query: 381 QLTLPSQAPSAQVQSVIQPNQQSVIQTASNIQSVQIPKGNVILVSKPSSVIHTTQGTLQ 557 Q P A SAQ+ + SV QTA +SVQ + +++ V+KP T T Q Sbjct: 321 QSVAPPMAHSAQLYASQSNINSSVSQTAPTRESVQHGRVHMVSVAKPPVSTQPTTSTNQ 379 >09_04_0202 - 15544498-15545037,15546043-15546449,15546874-15546977, 15547580-15547788,15548092-15549428,15551680-15551941 Length = 952 Score = 29.1 bits (62), Expect = 3.1 Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 1/61 (1%) Frame = -2 Query: 288 RSLQPSLPCQLRSPVTYSSSPSMLRPEWVNGKVRSSHVNCE-KTRHWRRPMILYASSQYG 112 RS P + SP YS+S +N + + C KT WR + +Y + YG Sbjct: 118 RSQVPVISFTATSPSLYSASLPYFVRATLNDSAQVQSIACLIKTYGWREVVPIYEDTDYG 177 Query: 111 R 109 R Sbjct: 178 R 178 >05_05_0043 + 21816393-21816749 Length = 118 Score = 29.1 bits (62), Expect = 3.1 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%) Frame = -2 Query: 276 PSLPCQLRSPVTYSSSPSMLRPEWVNGKVRSSHVNC-EKTRHWRRP 142 PSLPC+ RS T ++ + + V G++R C E+ RRP Sbjct: 13 PSLPCRTRSATT-AALGGQIEDDGVGGQIRRRRSRCGEREAAARRP 57 >06_02_0215 - 13145544-13146482,13148797-13149297 Length = 479 Score = 27.9 bits (59), Expect = 7.2 Identities = 15/49 (30%), Positives = 24/49 (48%) Frame = -2 Query: 255 RSPVTYSSSPSMLRPEWVNGKVRSSHVNCEKTRHWRRPMILYASSQYGR 109 R+ +Y + ML E + +C TR +R P +LY S+ YG+ Sbjct: 271 RASYSYDAEEGMLEEE------SGAFTSCVGTRWFRAPELLYGSTNYGQ 313 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 16,687,386 Number of Sequences: 37544 Number of extensions: 344143 Number of successful extensions: 797 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 779 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 797 length of database: 14,793,348 effective HSP length: 79 effective length of database: 11,827,372 effective search space used: 1573040476 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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