Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12b15f
         (640 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20196| Best HMM Match : No HMM Matches (HMM E-Value=.)              35   0.064
SB_21573| Best HMM Match : WD40 (HMM E-Value=4.1e-32)                  31   0.60 
SB_51569| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.8  
SB_18084| Best HMM Match : DUF801 (HMM E-Value=0.37)                   29   3.2  
SB_15869| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.2  
SB_49262| Best HMM Match : Virus_P-coat (HMM E-Value=1.8)              29   3.2  
SB_53562| Best HMM Match : Exo_endo_phos (HMM E-Value=0.018)           28   7.4  
SB_49734| Best HMM Match : SapB_2 (HMM E-Value=0)                      28   7.4  
SB_4758| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.4  

>SB_20196| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 297

 Score = 34.7 bits (76), Expect = 0.064
 Identities = 16/19 (84%), Positives = 17/19 (89%)
 Frame = +3

Query: 414 QVQSVIQPNQQSVIQTASN 470
           QV SVIQPNQQSVIQTA +
Sbjct: 40  QVSSVIQPNQQSVIQTAQS 58


>SB_21573| Best HMM Match : WD40 (HMM E-Value=4.1e-32)
          Length = 458

 Score = 31.5 bits (68), Expect = 0.60
 Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = +2

Query: 158 RVFSQLTWLLRTFPFTHSGRSI-DGDEEYV 244
           R FS+L W +RT  F+H GR +  G E+ +
Sbjct: 269 RTFSRLDWPVRTLSFSHDGRMLASGSEDLI 298


>SB_51569| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 899

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 20/75 (26%), Positives = 31/75 (41%)
 Frame = +3

Query: 396 SQAPSAQVQSVIQPNQQSVIQTASNIQSVQIPKGNVILVSKPSSVIHTTQGTLQTLQIKP 575
           +Q+P+AQ+ +   P  QS     S   +  I +GN      P++ + TTQ     L    
Sbjct: 608 TQSPTAQMSTTQSPTAQSPTAQMSTTDAGDIIRGNT--TQLPTAQMSTTQSPTTQLPTTQ 665

Query: 576 EPNTLVNTQGQSCSD 620
            P     T   S +D
Sbjct: 666 SPTAQSPTAQMSTTD 680


>SB_18084| Best HMM Match : DUF801 (HMM E-Value=0.37)
          Length = 599

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 14/46 (30%), Positives = 25/46 (54%)
 Frame = -2

Query: 270 LPCQLRSPVTYSSSPSMLRPEWVNGKVRSSHVNCEKTRHWRRPMIL 133
           +P   + PVT+S+S +   PE VN +     ++CE   +  RP ++
Sbjct: 264 VPDVTQDPVTFSASSTTQGPEAVNFESSPRDISCETPGNHVRPALI 309


>SB_15869| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1420

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = -3

Query: 215  VRSG*TGRYVVATSTARRLVTGGDL*SCMRHHNMAEFFNWI 93
            VRS    R+V+     + L +  DL   MRH     FF W+
Sbjct: 1237 VRSSVIRRFVILAKCEKALFSLADLGKPMRHFRFNSFFRWL 1277


>SB_49262| Best HMM Match : Virus_P-coat (HMM E-Value=1.8)
          Length = 586

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 19/75 (25%), Positives = 34/75 (45%), Gaps = 5/75 (6%)
 Frame = +3

Query: 372 SIVQLTLPSQAPSAQVQSVIQPNQQSVIQTASNIQSVQIPKG----NVILVSKPSSVIHT 539
           ++ Q T  S  P +++    QP  Q+V    S+ Q+   P G    +V    +     HT
Sbjct: 495 TLAQATDTSSIPRSRLLGPAQPTHQTVASNTSSFQACITPSGYAKSSVSAQLRKDKPAHT 554

Query: 540 T-QGTLQTLQIKPEP 581
           T + T +  +++P P
Sbjct: 555 TRRSTREAYRLEPAP 569


>SB_53562| Best HMM Match : Exo_endo_phos (HMM E-Value=0.018)
          Length = 721

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +1

Query: 325 PARALRHRVPLLMLSPV*YNLLYPVRLPLHRCSLLFNLI 441
           P+R L H  P  +LS V +  L P+RLP    S++  +I
Sbjct: 193 PSRRLDHLEPTGLLSEVLWLQLRPIRLPRSVSSIVLGVI 231


>SB_49734| Best HMM Match : SapB_2 (HMM E-Value=0)
          Length = 457

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 9/34 (26%), Positives = 18/34 (52%)
 Frame = -2

Query: 294 WCRSLQPSLPCQLRSPVTYSSSPSMLRPEWVNGK 193
           WC   + ++ C++ S +   +   +L  +W NGK
Sbjct: 423 WCADRRNAVNCEVSSAIKIYTYKRVLAAQWANGK 456


>SB_4758| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 788

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 19/79 (24%), Positives = 34/79 (43%)
 Frame = +3

Query: 396 SQAPSAQVQSVIQPNQQSVIQTASNIQSVQIPKGNVILVSKPSSVIHTTQGTLQTLQIKP 575
           +Q+P+  +QS  +  Q   + T S  +  Q PK   ++    + V  +  G  Q+LQ   
Sbjct: 687 TQSPTGAIQSPQEVTQSPQVVTQSPQEVTQSPK---VVTQSSTEVTQSPLGVTQSLQAVT 743

Query: 576 EPNTLVNTQGQSCSDESCG 632
           +  T V    Q+ +    G
Sbjct: 744 QSPTGVTRSPQAVTQSPTG 762


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,556,170
Number of Sequences: 59808
Number of extensions: 409684
Number of successful extensions: 1075
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 977
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1074
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1608851125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)