BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fmgV12b15f (640 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_20196| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.064 SB_21573| Best HMM Match : WD40 (HMM E-Value=4.1e-32) 31 0.60 SB_51569| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8 SB_18084| Best HMM Match : DUF801 (HMM E-Value=0.37) 29 3.2 SB_15869| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.2 SB_49262| Best HMM Match : Virus_P-coat (HMM E-Value=1.8) 29 3.2 SB_53562| Best HMM Match : Exo_endo_phos (HMM E-Value=0.018) 28 7.4 SB_49734| Best HMM Match : SapB_2 (HMM E-Value=0) 28 7.4 SB_4758| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.4 >SB_20196| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 297 Score = 34.7 bits (76), Expect = 0.064 Identities = 16/19 (84%), Positives = 17/19 (89%) Frame = +3 Query: 414 QVQSVIQPNQQSVIQTASN 470 QV SVIQPNQQSVIQTA + Sbjct: 40 QVSSVIQPNQQSVIQTAQS 58 >SB_21573| Best HMM Match : WD40 (HMM E-Value=4.1e-32) Length = 458 Score = 31.5 bits (68), Expect = 0.60 Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 1/30 (3%) Frame = +2 Query: 158 RVFSQLTWLLRTFPFTHSGRSI-DGDEEYV 244 R FS+L W +RT F+H GR + G E+ + Sbjct: 269 RTFSRLDWPVRTLSFSHDGRMLASGSEDLI 298 >SB_51569| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 899 Score = 29.9 bits (64), Expect = 1.8 Identities = 20/75 (26%), Positives = 31/75 (41%) Frame = +3 Query: 396 SQAPSAQVQSVIQPNQQSVIQTASNIQSVQIPKGNVILVSKPSSVIHTTQGTLQTLQIKP 575 +Q+P+AQ+ + P QS S + I +GN P++ + TTQ L Sbjct: 608 TQSPTAQMSTTQSPTAQSPTAQMSTTDAGDIIRGNT--TQLPTAQMSTTQSPTTQLPTTQ 665 Query: 576 EPNTLVNTQGQSCSD 620 P T S +D Sbjct: 666 SPTAQSPTAQMSTTD 680 >SB_18084| Best HMM Match : DUF801 (HMM E-Value=0.37) Length = 599 Score = 29.1 bits (62), Expect = 3.2 Identities = 14/46 (30%), Positives = 25/46 (54%) Frame = -2 Query: 270 LPCQLRSPVTYSSSPSMLRPEWVNGKVRSSHVNCEKTRHWRRPMIL 133 +P + PVT+S+S + PE VN + ++CE + RP ++ Sbjct: 264 VPDVTQDPVTFSASSTTQGPEAVNFESSPRDISCETPGNHVRPALI 309 >SB_15869| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1420 Score = 29.1 bits (62), Expect = 3.2 Identities = 14/41 (34%), Positives = 19/41 (46%) Frame = -3 Query: 215 VRSG*TGRYVVATSTARRLVTGGDL*SCMRHHNMAEFFNWI 93 VRS R+V+ + L + DL MRH FF W+ Sbjct: 1237 VRSSVIRRFVILAKCEKALFSLADLGKPMRHFRFNSFFRWL 1277 >SB_49262| Best HMM Match : Virus_P-coat (HMM E-Value=1.8) Length = 586 Score = 29.1 bits (62), Expect = 3.2 Identities = 19/75 (25%), Positives = 34/75 (45%), Gaps = 5/75 (6%) Frame = +3 Query: 372 SIVQLTLPSQAPSAQVQSVIQPNQQSVIQTASNIQSVQIPKG----NVILVSKPSSVIHT 539 ++ Q T S P +++ QP Q+V S+ Q+ P G +V + HT Sbjct: 495 TLAQATDTSSIPRSRLLGPAQPTHQTVASNTSSFQACITPSGYAKSSVSAQLRKDKPAHT 554 Query: 540 T-QGTLQTLQIKPEP 581 T + T + +++P P Sbjct: 555 TRRSTREAYRLEPAP 569 >SB_53562| Best HMM Match : Exo_endo_phos (HMM E-Value=0.018) Length = 721 Score = 27.9 bits (59), Expect = 7.4 Identities = 15/39 (38%), Positives = 22/39 (56%) Frame = +1 Query: 325 PARALRHRVPLLMLSPV*YNLLYPVRLPLHRCSLLFNLI 441 P+R L H P +LS V + L P+RLP S++ +I Sbjct: 193 PSRRLDHLEPTGLLSEVLWLQLRPIRLPRSVSSIVLGVI 231 >SB_49734| Best HMM Match : SapB_2 (HMM E-Value=0) Length = 457 Score = 27.9 bits (59), Expect = 7.4 Identities = 9/34 (26%), Positives = 18/34 (52%) Frame = -2 Query: 294 WCRSLQPSLPCQLRSPVTYSSSPSMLRPEWVNGK 193 WC + ++ C++ S + + +L +W NGK Sbjct: 423 WCADRRNAVNCEVSSAIKIYTYKRVLAAQWANGK 456 >SB_4758| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 788 Score = 27.9 bits (59), Expect = 7.4 Identities = 19/79 (24%), Positives = 34/79 (43%) Frame = +3 Query: 396 SQAPSAQVQSVIQPNQQSVIQTASNIQSVQIPKGNVILVSKPSSVIHTTQGTLQTLQIKP 575 +Q+P+ +QS + Q + T S + Q PK ++ + V + G Q+LQ Sbjct: 687 TQSPTGAIQSPQEVTQSPQVVTQSPQEVTQSPK---VVTQSSTEVTQSPLGVTQSLQAVT 743 Query: 576 EPNTLVNTQGQSCSDESCG 632 + T V Q+ + G Sbjct: 744 QSPTGVTRSPQAVTQSPTG 762 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 19,556,170 Number of Sequences: 59808 Number of extensions: 409684 Number of successful extensions: 1075 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 977 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1074 length of database: 16,821,457 effective HSP length: 79 effective length of database: 12,096,625 effective search space used: 1608851125 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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