Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV12b15f
(640 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF067948-3|AAO25984.1| 870|Caenorhabditis elegans Egl-27 relate... 29 2.1
AF067948-2|AAD34654.1| 870|Caenorhabditis elegans Egl-27 relate... 29 2.1
AF067948-1|AAD34653.1| 1022|Caenorhabditis elegans Egl-27 relate... 29 2.1
AY305835-1|AAR11980.1| 618|Caenorhabditis elegans nuclear recep... 28 4.9
AF273820-1|AAG15169.1| 624|Caenorhabditis elegans nuclear recep... 28 4.9
AF273819-1|AAG15168.1| 619|Caenorhabditis elegans nuclear recep... 28 4.9
AF047660-8|AAM54167.1| 526|Caenorhabditis elegans Nuclear hormo... 28 4.9
AF047660-7|AAM54166.1| 577|Caenorhabditis elegans Nuclear hormo... 28 4.9
AF047660-6|AAV34786.1| 659|Caenorhabditis elegans Nuclear hormo... 28 4.9
AF047660-5|AAM54168.1| 733|Caenorhabditis elegans Nuclear hormo... 28 4.9
AC084158-36|AAK68577.1| 1219|Caenorhabditis elegans Hypothetical... 28 4.9
>AF067948-3|AAO25984.1| 870|Caenorhabditis elegans Egl-27 related
protein 1, isoform d protein.
Length = 870
Score = 29.5 bits (63), Expect = 2.1
Identities = 17/49 (34%), Positives = 24/49 (48%)
Frame = +3
Query: 396 SQAPSAQVQSVIQPNQQSVIQTASNIQSVQIPKGNVILVSKPSSVIHTT 542
+Q AQ+Q IQ QQ QT + V P+ +KP+ V +TT
Sbjct: 722 AQKIQAQIQQQIQQQQQRQAQTTPQV--VATPRKKTTPATKPAIVFYTT 768
>AF067948-2|AAD34654.1| 870|Caenorhabditis elegans Egl-27 related
protein 1, isoform b protein.
Length = 870
Score = 29.5 bits (63), Expect = 2.1
Identities = 17/49 (34%), Positives = 24/49 (48%)
Frame = +3
Query: 396 SQAPSAQVQSVIQPNQQSVIQTASNIQSVQIPKGNVILVSKPSSVIHTT 542
+Q AQ+Q IQ QQ QT + V P+ +KP+ V +TT
Sbjct: 722 AQKIQAQIQQQIQQQQQRQAQTTPQV--VATPRKKTTPATKPAIVFYTT 768
>AF067948-1|AAD34653.1| 1022|Caenorhabditis elegans Egl-27 related
protein 1, isoform a protein.
Length = 1022
Score = 29.5 bits (63), Expect = 2.1
Identities = 17/49 (34%), Positives = 24/49 (48%)
Frame = +3
Query: 396 SQAPSAQVQSVIQPNQQSVIQTASNIQSVQIPKGNVILVSKPSSVIHTT 542
+Q AQ+Q IQ QQ QT + V P+ +KP+ V +TT
Sbjct: 722 AQKIQAQIQQQIQQQQQRQAQTTPQV--VATPRKKTTPATKPAIVFYTT 768
>AY305835-1|AAR11980.1| 618|Caenorhabditis elegans nuclear receptor
NHR-66 protein.
Length = 618
Score = 28.3 bits (60), Expect = 4.9
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
Frame = +3
Query: 489 PKGNVILVSKPSSVIHTTQGTLQTLQ----IKPEPNTLVNTQGQSCSDESCG 632
P V VS+PS+ + G Q + I P+TL TQ +C + +CG
Sbjct: 254 PSAKVSTVSEPSTSSGPSGGFNQNVSSPAGIPRVPSTLRTTQASTCMNSACG 305
>AF273820-1|AAG15169.1| 624|Caenorhabditis elegans nuclear receptor
NHR-66 protein.
Length = 624
Score = 28.3 bits (60), Expect = 4.9
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
Frame = +3
Query: 489 PKGNVILVSKPSSVIHTTQGTLQTLQ----IKPEPNTLVNTQGQSCSDESCG 632
P V VS+PS+ + G Q + I P+TL TQ +C + +CG
Sbjct: 258 PSAKVSTVSEPSTSSGPSGGFNQNVSSPAGIPRVPSTLRTTQASTCMNSACG 309
>AF273819-1|AAG15168.1| 619|Caenorhabditis elegans nuclear receptor
NHR-66 protein.
Length = 619
Score = 28.3 bits (60), Expect = 4.9
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
Frame = +3
Query: 489 PKGNVILVSKPSSVIHTTQGTLQTLQ----IKPEPNTLVNTQGQSCSDESCG 632
P V VS+PS+ + G Q + I P+TL TQ +C + +CG
Sbjct: 253 PSAKVSTVSEPSTSSGPSGGFNQNVSSPAGIPRVPSTLRTTQASTCMNSACG 304
>AF047660-8|AAM54167.1| 526|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 66, isoform b protein.
Length = 526
Score = 28.3 bits (60), Expect = 4.9
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
Frame = +3
Query: 489 PKGNVILVSKPSSVIHTTQGTLQTLQ----IKPEPNTLVNTQGQSCSDESCG 632
P V VS+PS+ + G Q + I P+TL TQ +C + +CG
Sbjct: 160 PSAKVSTVSEPSTSSGPSGGFNQNVSSPAGIPRVPSTLRTTQASTCMNSACG 211
>AF047660-7|AAM54166.1| 577|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 66, isoform a protein.
Length = 577
Score = 28.3 bits (60), Expect = 4.9
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
Frame = +3
Query: 489 PKGNVILVSKPSSVIHTTQGTLQTLQ----IKPEPNTLVNTQGQSCSDESCG 632
P V VS+PS+ + G Q + I P+TL TQ +C + +CG
Sbjct: 211 PSAKVSTVSEPSTSSGPSGGFNQNVSSPAGIPRVPSTLRTTQASTCMNSACG 262
>AF047660-6|AAV34786.1| 659|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 66, isoform d protein.
Length = 659
Score = 28.3 bits (60), Expect = 4.9
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
Frame = +3
Query: 489 PKGNVILVSKPSSVIHTTQGTLQTLQ----IKPEPNTLVNTQGQSCSDESCG 632
P V VS+PS+ + G Q + I P+TL TQ +C + +CG
Sbjct: 293 PSAKVSTVSEPSTSSGPSGGFNQNVSSPAGIPRVPSTLRTTQASTCMNSACG 344
>AF047660-5|AAM54168.1| 733|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 66, isoform c protein.
Length = 733
Score = 28.3 bits (60), Expect = 4.9
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
Frame = +3
Query: 489 PKGNVILVSKPSSVIHTTQGTLQTLQ----IKPEPNTLVNTQGQSCSDESCG 632
P V VS+PS+ + G Q + I P+TL TQ +C + +CG
Sbjct: 367 PSAKVSTVSEPSTSSGPSGGFNQNVSSPAGIPRVPSTLRTTQASTCMNSACG 418
>AC084158-36|AAK68577.1| 1219|Caenorhabditis elegans Hypothetical
protein Y69A2AR.31 protein.
Length = 1219
Score = 28.3 bits (60), Expect = 4.9
Identities = 15/48 (31%), Positives = 23/48 (47%)
Frame = +3
Query: 438 NQQSVIQTASNIQSVQIPKGNVILVSKPSSVIHTTQGTLQTLQIKPEP 581
+Q S+I T I+S I ++ SKP + Q T++ PEP
Sbjct: 692 HQNSMIPTNPCIESAMIEYSRIMGYSKPGLATNRVQSTVEEAVDPPEP 739
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,273,517
Number of Sequences: 27780
Number of extensions: 291951
Number of successful extensions: 618
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 594
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 618
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1416829972
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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