BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fmgV12b15f (640 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AF067948-3|AAO25984.1| 870|Caenorhabditis elegans Egl-27 relate... 29 2.1 AF067948-2|AAD34654.1| 870|Caenorhabditis elegans Egl-27 relate... 29 2.1 AF067948-1|AAD34653.1| 1022|Caenorhabditis elegans Egl-27 relate... 29 2.1 AY305835-1|AAR11980.1| 618|Caenorhabditis elegans nuclear recep... 28 4.9 AF273820-1|AAG15169.1| 624|Caenorhabditis elegans nuclear recep... 28 4.9 AF273819-1|AAG15168.1| 619|Caenorhabditis elegans nuclear recep... 28 4.9 AF047660-8|AAM54167.1| 526|Caenorhabditis elegans Nuclear hormo... 28 4.9 AF047660-7|AAM54166.1| 577|Caenorhabditis elegans Nuclear hormo... 28 4.9 AF047660-6|AAV34786.1| 659|Caenorhabditis elegans Nuclear hormo... 28 4.9 AF047660-5|AAM54168.1| 733|Caenorhabditis elegans Nuclear hormo... 28 4.9 AC084158-36|AAK68577.1| 1219|Caenorhabditis elegans Hypothetical... 28 4.9 >AF067948-3|AAO25984.1| 870|Caenorhabditis elegans Egl-27 related protein 1, isoform d protein. Length = 870 Score = 29.5 bits (63), Expect = 2.1 Identities = 17/49 (34%), Positives = 24/49 (48%) Frame = +3 Query: 396 SQAPSAQVQSVIQPNQQSVIQTASNIQSVQIPKGNVILVSKPSSVIHTT 542 +Q AQ+Q IQ QQ QT + V P+ +KP+ V +TT Sbjct: 722 AQKIQAQIQQQIQQQQQRQAQTTPQV--VATPRKKTTPATKPAIVFYTT 768 >AF067948-2|AAD34654.1| 870|Caenorhabditis elegans Egl-27 related protein 1, isoform b protein. Length = 870 Score = 29.5 bits (63), Expect = 2.1 Identities = 17/49 (34%), Positives = 24/49 (48%) Frame = +3 Query: 396 SQAPSAQVQSVIQPNQQSVIQTASNIQSVQIPKGNVILVSKPSSVIHTT 542 +Q AQ+Q IQ QQ QT + V P+ +KP+ V +TT Sbjct: 722 AQKIQAQIQQQIQQQQQRQAQTTPQV--VATPRKKTTPATKPAIVFYTT 768 >AF067948-1|AAD34653.1| 1022|Caenorhabditis elegans Egl-27 related protein 1, isoform a protein. Length = 1022 Score = 29.5 bits (63), Expect = 2.1 Identities = 17/49 (34%), Positives = 24/49 (48%) Frame = +3 Query: 396 SQAPSAQVQSVIQPNQQSVIQTASNIQSVQIPKGNVILVSKPSSVIHTT 542 +Q AQ+Q IQ QQ QT + V P+ +KP+ V +TT Sbjct: 722 AQKIQAQIQQQIQQQQQRQAQTTPQV--VATPRKKTTPATKPAIVFYTT 768 >AY305835-1|AAR11980.1| 618|Caenorhabditis elegans nuclear receptor NHR-66 protein. Length = 618 Score = 28.3 bits (60), Expect = 4.9 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 4/52 (7%) Frame = +3 Query: 489 PKGNVILVSKPSSVIHTTQGTLQTLQ----IKPEPNTLVNTQGQSCSDESCG 632 P V VS+PS+ + G Q + I P+TL TQ +C + +CG Sbjct: 254 PSAKVSTVSEPSTSSGPSGGFNQNVSSPAGIPRVPSTLRTTQASTCMNSACG 305 >AF273820-1|AAG15169.1| 624|Caenorhabditis elegans nuclear receptor NHR-66 protein. Length = 624 Score = 28.3 bits (60), Expect = 4.9 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 4/52 (7%) Frame = +3 Query: 489 PKGNVILVSKPSSVIHTTQGTLQTLQ----IKPEPNTLVNTQGQSCSDESCG 632 P V VS+PS+ + G Q + I P+TL TQ +C + +CG Sbjct: 258 PSAKVSTVSEPSTSSGPSGGFNQNVSSPAGIPRVPSTLRTTQASTCMNSACG 309 >AF273819-1|AAG15168.1| 619|Caenorhabditis elegans nuclear receptor NHR-66 protein. Length = 619 Score = 28.3 bits (60), Expect = 4.9 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 4/52 (7%) Frame = +3 Query: 489 PKGNVILVSKPSSVIHTTQGTLQTLQ----IKPEPNTLVNTQGQSCSDESCG 632 P V VS+PS+ + G Q + I P+TL TQ +C + +CG Sbjct: 253 PSAKVSTVSEPSTSSGPSGGFNQNVSSPAGIPRVPSTLRTTQASTCMNSACG 304 >AF047660-8|AAM54167.1| 526|Caenorhabditis elegans Nuclear hormone receptor familyprotein 66, isoform b protein. Length = 526 Score = 28.3 bits (60), Expect = 4.9 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 4/52 (7%) Frame = +3 Query: 489 PKGNVILVSKPSSVIHTTQGTLQTLQ----IKPEPNTLVNTQGQSCSDESCG 632 P V VS+PS+ + G Q + I P+TL TQ +C + +CG Sbjct: 160 PSAKVSTVSEPSTSSGPSGGFNQNVSSPAGIPRVPSTLRTTQASTCMNSACG 211 >AF047660-7|AAM54166.1| 577|Caenorhabditis elegans Nuclear hormone receptor familyprotein 66, isoform a protein. Length = 577 Score = 28.3 bits (60), Expect = 4.9 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 4/52 (7%) Frame = +3 Query: 489 PKGNVILVSKPSSVIHTTQGTLQTLQ----IKPEPNTLVNTQGQSCSDESCG 632 P V VS+PS+ + G Q + I P+TL TQ +C + +CG Sbjct: 211 PSAKVSTVSEPSTSSGPSGGFNQNVSSPAGIPRVPSTLRTTQASTCMNSACG 262 >AF047660-6|AAV34786.1| 659|Caenorhabditis elegans Nuclear hormone receptor familyprotein 66, isoform d protein. Length = 659 Score = 28.3 bits (60), Expect = 4.9 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 4/52 (7%) Frame = +3 Query: 489 PKGNVILVSKPSSVIHTTQGTLQTLQ----IKPEPNTLVNTQGQSCSDESCG 632 P V VS+PS+ + G Q + I P+TL TQ +C + +CG Sbjct: 293 PSAKVSTVSEPSTSSGPSGGFNQNVSSPAGIPRVPSTLRTTQASTCMNSACG 344 >AF047660-5|AAM54168.1| 733|Caenorhabditis elegans Nuclear hormone receptor familyprotein 66, isoform c protein. Length = 733 Score = 28.3 bits (60), Expect = 4.9 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 4/52 (7%) Frame = +3 Query: 489 PKGNVILVSKPSSVIHTTQGTLQTLQ----IKPEPNTLVNTQGQSCSDESCG 632 P V VS+PS+ + G Q + I P+TL TQ +C + +CG Sbjct: 367 PSAKVSTVSEPSTSSGPSGGFNQNVSSPAGIPRVPSTLRTTQASTCMNSACG 418 >AC084158-36|AAK68577.1| 1219|Caenorhabditis elegans Hypothetical protein Y69A2AR.31 protein. Length = 1219 Score = 28.3 bits (60), Expect = 4.9 Identities = 15/48 (31%), Positives = 23/48 (47%) Frame = +3 Query: 438 NQQSVIQTASNIQSVQIPKGNVILVSKPSSVIHTTQGTLQTLQIKPEP 581 +Q S+I T I+S I ++ SKP + Q T++ PEP Sbjct: 692 HQNSMIPTNPCIESAMIEYSRIMGYSKPGLATNRVQSTVEEAVDPPEP 739 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 14,273,517 Number of Sequences: 27780 Number of extensions: 291951 Number of successful extensions: 618 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 594 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 618 length of database: 12,740,198 effective HSP length: 78 effective length of database: 10,573,358 effective search space used: 1416829972 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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