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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12b15f
         (640 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF067948-3|AAO25984.1|  870|Caenorhabditis elegans Egl-27 relate...    29   2.1  
AF067948-2|AAD34654.1|  870|Caenorhabditis elegans Egl-27 relate...    29   2.1  
AF067948-1|AAD34653.1| 1022|Caenorhabditis elegans Egl-27 relate...    29   2.1  
AY305835-1|AAR11980.1|  618|Caenorhabditis elegans nuclear recep...    28   4.9  
AF273820-1|AAG15169.1|  624|Caenorhabditis elegans nuclear recep...    28   4.9  
AF273819-1|AAG15168.1|  619|Caenorhabditis elegans nuclear recep...    28   4.9  
AF047660-8|AAM54167.1|  526|Caenorhabditis elegans Nuclear hormo...    28   4.9  
AF047660-7|AAM54166.1|  577|Caenorhabditis elegans Nuclear hormo...    28   4.9  
AF047660-6|AAV34786.1|  659|Caenorhabditis elegans Nuclear hormo...    28   4.9  
AF047660-5|AAM54168.1|  733|Caenorhabditis elegans Nuclear hormo...    28   4.9  
AC084158-36|AAK68577.1| 1219|Caenorhabditis elegans Hypothetical...    28   4.9  

>AF067948-3|AAO25984.1|  870|Caenorhabditis elegans Egl-27 related
           protein 1, isoform d protein.
          Length = 870

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 17/49 (34%), Positives = 24/49 (48%)
 Frame = +3

Query: 396 SQAPSAQVQSVIQPNQQSVIQTASNIQSVQIPKGNVILVSKPSSVIHTT 542
           +Q   AQ+Q  IQ  QQ   QT   +  V  P+      +KP+ V +TT
Sbjct: 722 AQKIQAQIQQQIQQQQQRQAQTTPQV--VATPRKKTTPATKPAIVFYTT 768


>AF067948-2|AAD34654.1|  870|Caenorhabditis elegans Egl-27 related
           protein 1, isoform b protein.
          Length = 870

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 17/49 (34%), Positives = 24/49 (48%)
 Frame = +3

Query: 396 SQAPSAQVQSVIQPNQQSVIQTASNIQSVQIPKGNVILVSKPSSVIHTT 542
           +Q   AQ+Q  IQ  QQ   QT   +  V  P+      +KP+ V +TT
Sbjct: 722 AQKIQAQIQQQIQQQQQRQAQTTPQV--VATPRKKTTPATKPAIVFYTT 768


>AF067948-1|AAD34653.1| 1022|Caenorhabditis elegans Egl-27 related
           protein 1, isoform a protein.
          Length = 1022

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 17/49 (34%), Positives = 24/49 (48%)
 Frame = +3

Query: 396 SQAPSAQVQSVIQPNQQSVIQTASNIQSVQIPKGNVILVSKPSSVIHTT 542
           +Q   AQ+Q  IQ  QQ   QT   +  V  P+      +KP+ V +TT
Sbjct: 722 AQKIQAQIQQQIQQQQQRQAQTTPQV--VATPRKKTTPATKPAIVFYTT 768


>AY305835-1|AAR11980.1|  618|Caenorhabditis elegans nuclear receptor
           NHR-66 protein.
          Length = 618

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
 Frame = +3

Query: 489 PKGNVILVSKPSSVIHTTQGTLQTLQ----IKPEPNTLVNTQGQSCSDESCG 632
           P   V  VS+PS+    + G  Q +     I   P+TL  TQ  +C + +CG
Sbjct: 254 PSAKVSTVSEPSTSSGPSGGFNQNVSSPAGIPRVPSTLRTTQASTCMNSACG 305


>AF273820-1|AAG15169.1|  624|Caenorhabditis elegans nuclear receptor
           NHR-66 protein.
          Length = 624

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
 Frame = +3

Query: 489 PKGNVILVSKPSSVIHTTQGTLQTLQ----IKPEPNTLVNTQGQSCSDESCG 632
           P   V  VS+PS+    + G  Q +     I   P+TL  TQ  +C + +CG
Sbjct: 258 PSAKVSTVSEPSTSSGPSGGFNQNVSSPAGIPRVPSTLRTTQASTCMNSACG 309


>AF273819-1|AAG15168.1|  619|Caenorhabditis elegans nuclear receptor
           NHR-66 protein.
          Length = 619

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
 Frame = +3

Query: 489 PKGNVILVSKPSSVIHTTQGTLQTLQ----IKPEPNTLVNTQGQSCSDESCG 632
           P   V  VS+PS+    + G  Q +     I   P+TL  TQ  +C + +CG
Sbjct: 253 PSAKVSTVSEPSTSSGPSGGFNQNVSSPAGIPRVPSTLRTTQASTCMNSACG 304


>AF047660-8|AAM54167.1|  526|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 66, isoform b protein.
          Length = 526

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
 Frame = +3

Query: 489 PKGNVILVSKPSSVIHTTQGTLQTLQ----IKPEPNTLVNTQGQSCSDESCG 632
           P   V  VS+PS+    + G  Q +     I   P+TL  TQ  +C + +CG
Sbjct: 160 PSAKVSTVSEPSTSSGPSGGFNQNVSSPAGIPRVPSTLRTTQASTCMNSACG 211


>AF047660-7|AAM54166.1|  577|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 66, isoform a protein.
          Length = 577

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
 Frame = +3

Query: 489 PKGNVILVSKPSSVIHTTQGTLQTLQ----IKPEPNTLVNTQGQSCSDESCG 632
           P   V  VS+PS+    + G  Q +     I   P+TL  TQ  +C + +CG
Sbjct: 211 PSAKVSTVSEPSTSSGPSGGFNQNVSSPAGIPRVPSTLRTTQASTCMNSACG 262


>AF047660-6|AAV34786.1|  659|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 66, isoform d protein.
          Length = 659

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
 Frame = +3

Query: 489 PKGNVILVSKPSSVIHTTQGTLQTLQ----IKPEPNTLVNTQGQSCSDESCG 632
           P   V  VS+PS+    + G  Q +     I   P+TL  TQ  +C + +CG
Sbjct: 293 PSAKVSTVSEPSTSSGPSGGFNQNVSSPAGIPRVPSTLRTTQASTCMNSACG 344


>AF047660-5|AAM54168.1|  733|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 66, isoform c protein.
          Length = 733

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
 Frame = +3

Query: 489 PKGNVILVSKPSSVIHTTQGTLQTLQ----IKPEPNTLVNTQGQSCSDESCG 632
           P   V  VS+PS+    + G  Q +     I   P+TL  TQ  +C + +CG
Sbjct: 367 PSAKVSTVSEPSTSSGPSGGFNQNVSSPAGIPRVPSTLRTTQASTCMNSACG 418


>AC084158-36|AAK68577.1| 1219|Caenorhabditis elegans Hypothetical
           protein Y69A2AR.31 protein.
          Length = 1219

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = +3

Query: 438 NQQSVIQTASNIQSVQIPKGNVILVSKPSSVIHTTQGTLQTLQIKPEP 581
           +Q S+I T   I+S  I    ++  SKP    +  Q T++     PEP
Sbjct: 692 HQNSMIPTNPCIESAMIEYSRIMGYSKPGLATNRVQSTVEEAVDPPEP 739


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,273,517
Number of Sequences: 27780
Number of extensions: 291951
Number of successful extensions: 618
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 594
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 618
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1416829972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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