Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12b15f
         (640 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g51640.1 68416.m05663 expressed protein                             29   2.6  
At5g05970.1 68418.m00661 transducin family protein / WD-40 repea...    29   3.4  
At1g61850.1 68414.m06979 patatin family protein similar to membr...    29   3.4  
At1g63020.1 68414.m07117 DNA-directed RNA polymerase alpha subun...    28   4.5  

>At3g51640.1 68416.m05663 expressed protein
          Length = 826

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 21/73 (28%), Positives = 33/73 (45%)
 Frame = +3

Query: 363 VVTSIVQLTLPSQAPSAQVQSVIQPNQQSVIQTASNIQSVQIPKGNVILVSKPSSVIHTT 542
           V +++  ++ PS  P   VQS   P+Q S I+T  N  S  +P    I V    S   + 
Sbjct: 503 VSSNVNTISRPSTNPQPNVQSSQVPSQVSSIRTFDNPISFGLPSPFTIPVYSSGSTTSSL 562

Query: 543 QGTLQTLQIKPEP 581
             +  T  + P+P
Sbjct: 563 GFSPPTELVFPQP 575


>At5g05970.1 68418.m00661 transducin family protein / WD-40 repeat
           family protein contains similarity to regulatory protein
           Nedd1; contains Pfam PF00400: WD domain, G-beta repeat
           (6 copies, 2 weak)|19804256|gb|AV785466.1|AV785466
          Length = 781

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = +3

Query: 390 LPSQAPSAQVQSVIQPNQQSVIQTASNIQSV-QIPKGNVILVSKPSSVIH 536
           LPS  PSA  QS + P  + V  +  N  SV Q P  N +  S P   +H
Sbjct: 351 LPSTTPSAS-QSAMAPGSRGVSASTVNASSVEQTPNRNHLWPSGPLGRLH 399


>At1g61850.1 68414.m06979 patatin family protein similar to
           membrane-associated calcium-independent phospholipase A2
           gamma; IPLA2 gamma [Homo sapiens] GI:8453174; contains
           Patatin domain PF01734, PF00514:
           Armadillo/beta-catenin-like repeat
          Length = 1265

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = -2

Query: 219 LRPEWVNGKVRSSHVNCEKTRHWRRPMIL 133
           L+P ++NGK+ +S V    +  WRR ++L
Sbjct: 830 LKPRFMNGKLPNSRVESSPSLGWRRNVLL 858


>At1g63020.1 68414.m07117 DNA-directed RNA polymerase alpha subunit
           family protein low similarity to RNA polymerase IIA
           largest subunit [Trypanosoma brucei] GI:162215; contains
           InterPro accession IPR000722: RNA polymerase, alpha
           subunit
          Length = 1453

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = -2

Query: 321 VDPSCQ-HRLWCRSLQPSLPCQLRSPVTYSSSPSMLRPEW 205
           V+ +C  +R   + LQ   P QL  P    +SPS   P+W
Sbjct: 502 VEKNCYLNRAQMQQLQMYCPFQLPPPAIIKASPSSTEPQW 541


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,385,619
Number of Sequences: 28952
Number of extensions: 271046
Number of successful extensions: 620
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 613
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 620
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1314848736
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)