BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fmgV12b15f (640 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At3g51640.1 68416.m05663 expressed protein 29 2.6 At5g05970.1 68418.m00661 transducin family protein / WD-40 repea... 29 3.4 At1g61850.1 68414.m06979 patatin family protein similar to membr... 29 3.4 At1g63020.1 68414.m07117 DNA-directed RNA polymerase alpha subun... 28 4.5 >At3g51640.1 68416.m05663 expressed protein Length = 826 Score = 29.1 bits (62), Expect = 2.6 Identities = 21/73 (28%), Positives = 33/73 (45%) Frame = +3 Query: 363 VVTSIVQLTLPSQAPSAQVQSVIQPNQQSVIQTASNIQSVQIPKGNVILVSKPSSVIHTT 542 V +++ ++ PS P VQS P+Q S I+T N S +P I V S + Sbjct: 503 VSSNVNTISRPSTNPQPNVQSSQVPSQVSSIRTFDNPISFGLPSPFTIPVYSSGSTTSSL 562 Query: 543 QGTLQTLQIKPEP 581 + T + P+P Sbjct: 563 GFSPPTELVFPQP 575 >At5g05970.1 68418.m00661 transducin family protein / WD-40 repeat family protein contains similarity to regulatory protein Nedd1; contains Pfam PF00400: WD domain, G-beta repeat (6 copies, 2 weak)|19804256|gb|AV785466.1|AV785466 Length = 781 Score = 28.7 bits (61), Expect = 3.4 Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 1/50 (2%) Frame = +3 Query: 390 LPSQAPSAQVQSVIQPNQQSVIQTASNIQSV-QIPKGNVILVSKPSSVIH 536 LPS PSA QS + P + V + N SV Q P N + S P +H Sbjct: 351 LPSTTPSAS-QSAMAPGSRGVSASTVNASSVEQTPNRNHLWPSGPLGRLH 399 >At1g61850.1 68414.m06979 patatin family protein similar to membrane-associated calcium-independent phospholipase A2 gamma; IPLA2 gamma [Homo sapiens] GI:8453174; contains Patatin domain PF01734, PF00514: Armadillo/beta-catenin-like repeat Length = 1265 Score = 28.7 bits (61), Expect = 3.4 Identities = 11/29 (37%), Positives = 19/29 (65%) Frame = -2 Query: 219 LRPEWVNGKVRSSHVNCEKTRHWRRPMIL 133 L+P ++NGK+ +S V + WRR ++L Sbjct: 830 LKPRFMNGKLPNSRVESSPSLGWRRNVLL 858 >At1g63020.1 68414.m07117 DNA-directed RNA polymerase alpha subunit family protein low similarity to RNA polymerase IIA largest subunit [Trypanosoma brucei] GI:162215; contains InterPro accession IPR000722: RNA polymerase, alpha subunit Length = 1453 Score = 28.3 bits (60), Expect = 4.5 Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 1/40 (2%) Frame = -2 Query: 321 VDPSCQ-HRLWCRSLQPSLPCQLRSPVTYSSSPSMLRPEW 205 V+ +C +R + LQ P QL P +SPS P+W Sbjct: 502 VEKNCYLNRAQMQQLQMYCPFQLPPPAIIKASPSSTEPQW 541 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 13,385,619 Number of Sequences: 28952 Number of extensions: 271046 Number of successful extensions: 620 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 613 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 620 length of database: 12,070,560 effective HSP length: 78 effective length of database: 9,812,304 effective search space used: 1314848736 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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