Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12b14r
         (693 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1672.09 |||triglyceride lipase-cholesterol esterase |Schizos...    46   4e-06
SPBC16A3.12c |||triglyceride lipase-cholesterol esterase |Schizo...    40   3e-04
SPAC56E4.03 |||aromatic aminotransferase |Schizosaccharomyces po...    30   0.36 
SPAC4H3.07c |||protein phosphatase Fmp31 |Schizosaccharomyces po...    27   1.9  
SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces po...    27   1.9  
SPBC1289.12 |usp109||U1 snRNP-associated protein Usp109|Schizosa...    27   2.6  
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce...    27   3.4  
SPBC31F10.04c |srb4|med17|mediator complex subunit Srb4|Schizosa...    26   5.9  
SPAC4F10.02 |||aminopeptidase |Schizosaccharomyces pombe|chr 1||...    25   7.9  
SPAC144.09c |sfc2||RNA polymerase III transcription factor TFIII...    25   7.9  
SPAC17A5.06 |ptr8||transcription factor TFIIH complex ERCC-3 sub...    25   7.9  

>SPCC1672.09 |||triglyceride lipase-cholesterol esterase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 467

 Score = 46.4 bits (105), Expect = 4e-06
 Identities = 44/216 (20%), Positives = 91/216 (42%)
 Frame = -2

Query: 689 PEYNSKIIAMQAYAPVAYLEFNANRLLKLIAPHANSIEALTSLIGINELFGRSDFFTNVG 510
           P  N KI ++ A AP    +   NR++        SI  L  L G   +   + F+ +  
Sbjct: 236 PLLNDKINSLIALAPAISPKGLHNRVVDAFVKARPSI--LFFLFGRKSILPSAGFWQSFL 293

Query: 509 MRFCADGVFFQAMCTNMLFAFAGRSEDMHNATMLPVKLGHTPAGIAVRQIAHYGQLINNN 330
                D V   A C + LF ++ ++   +      V   H  +  +V+ + H+ Q++ + 
Sbjct: 294 APKFFDAVL--AYCLSQLFNWSCQNISSYQRL---VSFAHLYSYTSVKCLVHWFQIMRSA 348

Query: 329 FFRRYDHGRLKNWRVYRSFTPPRYDLSLITAPVFLHYVDDDIFADVRDVRKLQIELGRPV 150
            FR YD+ +L +    + +   ++  + I  P++L +   D   D++ +         P 
Sbjct: 349 EFRMYDNDQLGHDYFLKYYKAAKFPTNNIRTPIYLIWGGSDSLVDIQAMLN-----ALPA 403

Query: 149 GMFRVPHATFSHLDFMWGSGAKELLYDRTIQIMRSL 42
            +  V   ++ HLD +W    K+ +    ++ +R +
Sbjct: 404 EVEHVKVDSYEHLDMIWADTVKDYVIPPVLRRLRDI 439


>SPBC16A3.12c |||triglyceride lipase-cholesterol esterase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 443

 Score = 40.3 bits (90), Expect = 3e-04
 Identities = 42/176 (23%), Positives = 74/176 (42%), Gaps = 7/176 (3%)
 Frame = -2

Query: 545 LFGRSDFFTNVGM--RFCADGVFFQAMCTNMLFAFAGRSEDMHNATMLPVKLG--HTPAG 378
           LFGR     +V      C   +F + +  ++   F   + D+ N ++     G  H  + 
Sbjct: 264 LFGRRCLLPSVTFWQNICYPPIFVKIVDVSLKILF---NWDLSNISLNQKLCGYAHLYSF 320

Query: 377 IAVRQIAHYGQLINNNFFRRYDHGR-LKNWRVYRSFTPPRYDLSLITAPVFLHYVDDDIF 201
            +V+ + H+ Q+I N  F+ YD    L      R +  P +  + I  P+ + +   D  
Sbjct: 321 SSVKSVVHWLQIIKNCTFQLYDDDMALLAGYGSRHYQVPLFPTNNIKCPMLILWGGKDTL 380

Query: 200 ADVRDVRKLQIELGRPVGMFRVPHATFSHLDFMWGSGAKELLYDRTIQIMR--SLG 39
            ++  +R        P     V  A + HLDF+WG   KE ++   I  ++  SLG
Sbjct: 381 INMEVMRT-----ALPPHAKEVSIAHYEHLDFLWGQDVKEEVFPVVIDALKHHSLG 431


>SPAC56E4.03 |||aromatic aminotransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 474

 Score = 29.9 bits (64), Expect = 0.36
 Identities = 16/56 (28%), Positives = 30/56 (53%)
 Frame = +3

Query: 261 SWRCETSVNPPIFQTSVIISSEEIVVDELTVMRYLPDSNACGCMS*FHRQHSRIVH 428
           SW+ ++S +  +   SV +SS +  V  L+V       +    +S F ++H+RI+H
Sbjct: 65  SWKKDSSNSGKLDTVSVPMSSSDSDVLPLSVALQYGQGSGAALLSQFLKEHTRIIH 120


>SPAC4H3.07c |||protein phosphatase Fmp31 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 171

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +1

Query: 394 PSFTGNIVALCMSSLRPAKANNIFVHIAWKN 486
           P F  N+V  C S  R   A++I   + +KN
Sbjct: 123 PVFEDNVVVYCRSGRRSTTASDILTKLGYKN 153


>SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 811

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -2

Query: 221 YVDDDIFADVRDVRKLQIELGRPVGMFRVPH 129
           Y+D   F +       ++ LG+PVG+FR  H
Sbjct: 622 YIDRSDFREEASSDFFRLTLGQPVGLFRASH 652


>SPBC1289.12 |usp109||U1 snRNP-associated protein
           Usp109|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 352

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 17/55 (30%), Positives = 26/55 (47%)
 Frame = +1

Query: 442 PAKANNIFVHIAWKNTPSAQNLIPTFVKKSDLPNSSFIPMRLVSASILLACGAIS 606
           P    N +   +W +T SA  L P     SD P  S +P  +++ S L  C A++
Sbjct: 281 PFSPINPYYAKSWNHTASAPLLPPGLKNGSDYPYLS-VPPDILNDSYLAMCEAVN 334


>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2100

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = -2

Query: 497 ADGVFFQAMCTNMLFAFAGRSEDMHNATMLPVKLGHTPA 381
           A+G   +++C N+LFA    S+   N  +  VK   TPA
Sbjct: 859 AEGEIEESVCDNILFAINNLSQLNFNEKLKDVKDNLTPA 897


>SPBC31F10.04c |srb4|med17|mediator complex subunit
           Srb4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 545

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -1

Query: 180 KTTDRIGSSSWNVQSTTCN 124
           K  D IGSS+W+  S  CN
Sbjct: 273 KDRDEIGSSTWSWPSQNCN 291


>SPAC4F10.02 |||aminopeptidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 467

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -2

Query: 557 GINELFGRSDFFTNVGMRFCADGVFFQAMCTNML 456
           GI+E F  S    N+GM FCA     +++  N L
Sbjct: 244 GIHEEFVFSPRLDNLGMTFCASQALTKSLENNSL 277


>SPAC144.09c |sfc2||RNA polymerase III transcription factor
           TFIIIA|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 374

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 9/31 (29%), Positives = 16/31 (51%)
 Frame = -1

Query: 468 HKYVIRFCWTQ*RHAQCDYVACETRTYTRRH 376
           H  + + C T  +   C Y  C+ + YT++H
Sbjct: 69  HLKIHKRCHTNVKPFSCHYDGCDAQFYTQQH 99


>SPAC17A5.06 |ptr8||transcription factor TFIIH complex ERCC-3
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 804

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 15/51 (29%), Positives = 27/51 (52%)
 Frame = -2

Query: 656 AYAPVAYLEFNANRLLKLIAPHANSIEALTSLIGINELFGRSDFFTNVGMR 504
           +Y P   +  N N+       ++N  EA  S  GI+ +FG++DF   +G++
Sbjct: 37  SYKPAPRIRINNNKTKAQTTTNSN--EARQS--GISAMFGQNDFSNLLGLK 83


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,875,916
Number of Sequences: 5004
Number of extensions: 61577
Number of successful extensions: 160
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)