BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fmgV12b14r (693 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 04_03_0156 - 11963580-11963914,11964422-11964517,11964618-119646... 69 4e-12 09_01_0014 + 357398-357583,360213-360323,360520-360676,361067-36... 59 4e-09 06_03_0852 - 25371461-25371783,25372080-25372159,25372472-253725... 46 3e-05 08_02_1358 - 26372559-26372887,26373183-26373262,26373287-263734... 40 0.001 06_03_0893 - 25721576-25722205,25722366-25722443,25722628-25723560 29 2.6 01_06_1202 + 35396165-35396260,35396398-35396549,35396694-353969... 29 4.6 08_01_0397 - 3509186-3510291,3510322-3512335 28 6.1 08_01_0353 - 3107628-3107774,3108177-3108213,3108248-3109164,310... 28 6.1 02_02_0146 - 7171656-7172044,7172383-7175008 28 8.1 >04_03_0156 - 11963580-11963914,11964422-11964517,11964618-11964697, 11965250-11965290,11965402-11965548,11965922-11966035, 11968842-11968961,11969491-11969631,11969892-11970014, 11970357-11970566 Length = 468 Score = 68.9 bits (161), Expect = 4e-12 Identities = 59/202 (29%), Positives = 96/202 (47%), Gaps = 9/202 (4%) Frame = -2 Query: 650 APVAYLEFNANRLLKLIAPHANSIEALTSLIGINELFGRSDFFTNVGMRFCAD-GVFFQA 474 +P+A+L+ ++ L + A EAL L G++E ++ ++ C G+ Sbjct: 262 SPIAFLDKMSSPLARAAAD-VFLAEALYWL-GLSEFDPTGEYVHSLVTDICKQPGID--- 316 Query: 473 MCTNMLFAFAGRSEDMHNATMLPVKLGHTPAGIAVRQIAHYGQLINNNFFRRYDHGRL-K 297 C N++ AF G + + N+++ V L H P A + + H Q+I +YD+G Sbjct: 317 -CYNLMSAFTGDNCCLDNSSV-QVFLAHEPQATATKNMIHLAQMIRGGTIAKYDYGNAGD 374 Query: 296 NWRVYRSFTPPRYDLSLITA--PVFLHYVDDDIFADVRDVRKLQIELG----RPVGMFRV 135 N Y TPP YD++ I P+FL Y D +DV+DV +L LG R V Sbjct: 375 NREHYGQATPPAYDVTAIPGDFPLFLSYGGRDSLSDVQDVSRLLRALGQSHSRDGDKLTV 434 Query: 134 PH-ATFSHLDFMWGSGAKELLY 72 + A ++H DF+ A E +Y Sbjct: 435 QYLADYAHADFVMARNAGERVY 456 >09_01_0014 + 357398-357583,360213-360323,360520-360676,361067-361233, 362012-362122,362206-362349,362436-362476,364134-364174, 364175-364261,365402-365724 Length = 455 Score = 58.8 bits (136), Expect = 4e-09 Identities = 35/104 (33%), Positives = 54/104 (51%), Gaps = 2/104 (1%) Frame = -2 Query: 344 LINNNFFRRYDHGRLKNWRVYRSFTPPRYDLSLI--TAPVFLHYVDDDIFADVRDVRKLQ 171 +I F +YD+G L N R Y PP +DLS I + P+++ Y D ADV DV++ Sbjct: 349 VIRKGTFAKYDYGLLGNLRRYGHLRPPAFDLSSIPESLPIWMGYGGLDALADVTDVQRTI 408 Query: 170 IELGRPVGMFRVPHATFSHLDFMWGSGAKELLYDRTIQIMRSLG 39 ELG + + + H+DF+ AK+ +Y I+ +R G Sbjct: 409 RELGSTPELLYI--GDYGHIDFVMSVKAKDDVYVDLIRFLRENG 450 >06_03_0852 - 25371461-25371783,25372080-25372159,25372472-25372554, 25372597-25372740,25372836-25372946,25373238-25373354, 25373436-25373562,25374160-25374296 Length = 373 Score = 46.0 bits (104), Expect = 3e-05 Identities = 32/107 (29%), Positives = 50/107 (46%), Gaps = 8/107 (7%) Frame = -2 Query: 344 LINNNFFRRYDHGRLK-NWRVYRSFTPPRYDLSLIT--APVFLHYVDDDIFADVRDVRKL 174 ++ N R+D+G K N + Y PP Y+LS I P+FL + +D DV D R L Sbjct: 267 VVRNGGVSRFDYGNAKDNMKHYNQPRPPPYNLSSIPNHVPIFLTHGGEDYLGDVPDTRHL 326 Query: 173 QIELGRP-----VGMFRVPHATFSHLDFMWGSGAKELLYDRTIQIMR 48 L + + + VP ++H DF+ A EL+Y + + Sbjct: 327 LRTLVKKHNSDSIEVIYVPD--YAHADFIMAYNAPELIYGPMVDFFK 371 >08_02_1358 - 26372559-26372887,26373183-26373262,26373287-26373420, 26373546-26373689,26373809-26373919,26374165-26374305, 26376839-26376964,26377072-26377263 Length = 418 Score = 40.3 bits (90), Expect = 0.001 Identities = 29/85 (34%), Positives = 40/85 (47%), Gaps = 6/85 (7%) Frame = -2 Query: 284 YRSFTPPRYDLSLITA--PVFLHYVDDDIFADVRDVRKLQIEL---GRPVGMFRVPHAT- 123 Y PP YD++ I A P+FL Y D +D DV L +L G V + Sbjct: 331 YGQADPPAYDMAAIPAWFPIFLSYGGRDSLSDPADVALLLDDLRRGGHAGDRLTVQYLPQ 390 Query: 122 FSHLDFMWGSGAKELLYDRTIQIMR 48 +H DF+ G AK+L+Y+ I R Sbjct: 391 LAHADFVIGVCAKDLVYNDVISFFR 415 >06_03_0893 - 25721576-25722205,25722366-25722443,25722628-25723560 Length = 546 Score = 29.5 bits (63), Expect = 2.6 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 1/50 (2%) Frame = -1 Query: 147 NVQSTTCNFQSS*FHVGIR-CQGITI*QNDSNNEITRGRIKNYYNWQLPD 1 N+ NF+ + F G R C GI +N E+ + ++NWQLPD Sbjct: 461 NIDFKGTNFEYTPFGAGRRMCPGIAF--GLANVELMLASLLYHFNWQLPD 508 >01_06_1202 + 35396165-35396260,35396398-35396549,35396694-35396938, 35397044-35398350 Length = 599 Score = 28.7 bits (61), Expect = 4.6 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%) Frame = -2 Query: 488 VFFQAMCTNMLFAFAGRSEDMH-NATMLPVKLGHT 387 VF+Q +C A R ++MH T +PVK G T Sbjct: 217 VFYQPVCVRQCVANLQRHDNMHAETTAVPVKPGET 251 >08_01_0397 - 3509186-3510291,3510322-3512335 Length = 1039 Score = 28.3 bits (60), Expect = 6.1 Identities = 11/25 (44%), Positives = 16/25 (64%) Frame = +2 Query: 437 CVQQKRITYLCTSPGKIRHQRKISF 511 C + I LCTS GKI + R+++F Sbjct: 553 CTPGRMIDILCTSSGKITNLRRVTF 577 >08_01_0353 - 3107628-3107774,3108177-3108213,3108248-3109164, 3109210-3110952 Length = 947 Score = 28.3 bits (60), Expect = 6.1 Identities = 11/25 (44%), Positives = 16/25 (64%) Frame = +2 Query: 437 CVQQKRITYLCTSPGKIRHQRKISF 511 C + I LCTS GKI + R+++F Sbjct: 414 CTPGRMIDILCTSSGKITNLRRVTF 438 >02_02_0146 - 7171656-7172044,7172383-7175008 Length = 1004 Score = 27.9 bits (59), Expect = 8.1 Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 1/43 (2%) Frame = -2 Query: 662 MQAYAPVAYLEFNANRLLKLIAPHANSIEALTSL-IGINELFG 537 M +A + L+ NRL LI P S+ LTSL + N++ G Sbjct: 494 MSRFANLTELDLAGNRLSGLIPPSMQSLTKLTSLNLSSNQISG 536 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 18,199,846 Number of Sequences: 37544 Number of extensions: 383302 Number of successful extensions: 832 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 811 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 831 length of database: 14,793,348 effective HSP length: 80 effective length of database: 11,789,828 effective search space used: 1768474200 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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