SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12b14r
         (693 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0156 - 11963580-11963914,11964422-11964517,11964618-119646...    69   4e-12
09_01_0014 + 357398-357583,360213-360323,360520-360676,361067-36...    59   4e-09
06_03_0852 - 25371461-25371783,25372080-25372159,25372472-253725...    46   3e-05
08_02_1358 - 26372559-26372887,26373183-26373262,26373287-263734...    40   0.001
06_03_0893 - 25721576-25722205,25722366-25722443,25722628-25723560     29   2.6  
01_06_1202 + 35396165-35396260,35396398-35396549,35396694-353969...    29   4.6  
08_01_0397 - 3509186-3510291,3510322-3512335                           28   6.1  
08_01_0353 - 3107628-3107774,3108177-3108213,3108248-3109164,310...    28   6.1  
02_02_0146 - 7171656-7172044,7172383-7175008                           28   8.1  

>04_03_0156 -
           11963580-11963914,11964422-11964517,11964618-11964697,
           11965250-11965290,11965402-11965548,11965922-11966035,
           11968842-11968961,11969491-11969631,11969892-11970014,
           11970357-11970566
          Length = 468

 Score = 68.9 bits (161), Expect = 4e-12
 Identities = 59/202 (29%), Positives = 96/202 (47%), Gaps = 9/202 (4%)
 Frame = -2

Query: 650 APVAYLEFNANRLLKLIAPHANSIEALTSLIGINELFGRSDFFTNVGMRFCAD-GVFFQA 474
           +P+A+L+  ++ L +  A      EAL  L G++E     ++  ++    C   G+    
Sbjct: 262 SPIAFLDKMSSPLARAAAD-VFLAEALYWL-GLSEFDPTGEYVHSLVTDICKQPGID--- 316

Query: 473 MCTNMLFAFAGRSEDMHNATMLPVKLGHTPAGIAVRQIAHYGQLINNNFFRRYDHGRL-K 297
            C N++ AF G +  + N+++  V L H P   A + + H  Q+I      +YD+G    
Sbjct: 317 -CYNLMSAFTGDNCCLDNSSV-QVFLAHEPQATATKNMIHLAQMIRGGTIAKYDYGNAGD 374

Query: 296 NWRVYRSFTPPRYDLSLITA--PVFLHYVDDDIFADVRDVRKLQIELG----RPVGMFRV 135
           N   Y   TPP YD++ I    P+FL Y   D  +DV+DV +L   LG    R      V
Sbjct: 375 NREHYGQATPPAYDVTAIPGDFPLFLSYGGRDSLSDVQDVSRLLRALGQSHSRDGDKLTV 434

Query: 134 PH-ATFSHLDFMWGSGAKELLY 72
            + A ++H DF+    A E +Y
Sbjct: 435 QYLADYAHADFVMARNAGERVY 456


>09_01_0014 +
           357398-357583,360213-360323,360520-360676,361067-361233,
           362012-362122,362206-362349,362436-362476,364134-364174,
           364175-364261,365402-365724
          Length = 455

 Score = 58.8 bits (136), Expect = 4e-09
 Identities = 35/104 (33%), Positives = 54/104 (51%), Gaps = 2/104 (1%)
 Frame = -2

Query: 344 LINNNFFRRYDHGRLKNWRVYRSFTPPRYDLSLI--TAPVFLHYVDDDIFADVRDVRKLQ 171
           +I    F +YD+G L N R Y    PP +DLS I  + P+++ Y   D  ADV DV++  
Sbjct: 349 VIRKGTFAKYDYGLLGNLRRYGHLRPPAFDLSSIPESLPIWMGYGGLDALADVTDVQRTI 408

Query: 170 IELGRPVGMFRVPHATFSHLDFMWGSGAKELLYDRTIQIMRSLG 39
            ELG    +  +    + H+DF+    AK+ +Y   I+ +R  G
Sbjct: 409 RELGSTPELLYI--GDYGHIDFVMSVKAKDDVYVDLIRFLRENG 450


>06_03_0852 -
           25371461-25371783,25372080-25372159,25372472-25372554,
           25372597-25372740,25372836-25372946,25373238-25373354,
           25373436-25373562,25374160-25374296
          Length = 373

 Score = 46.0 bits (104), Expect = 3e-05
 Identities = 32/107 (29%), Positives = 50/107 (46%), Gaps = 8/107 (7%)
 Frame = -2

Query: 344 LINNNFFRRYDHGRLK-NWRVYRSFTPPRYDLSLIT--APVFLHYVDDDIFADVRDVRKL 174
           ++ N    R+D+G  K N + Y    PP Y+LS I    P+FL +  +D   DV D R L
Sbjct: 267 VVRNGGVSRFDYGNAKDNMKHYNQPRPPPYNLSSIPNHVPIFLTHGGEDYLGDVPDTRHL 326

Query: 173 QIELGRP-----VGMFRVPHATFSHLDFMWGSGAKELLYDRTIQIMR 48
              L +      + +  VP   ++H DF+    A EL+Y   +   +
Sbjct: 327 LRTLVKKHNSDSIEVIYVPD--YAHADFIMAYNAPELIYGPMVDFFK 371


>08_02_1358 -
           26372559-26372887,26373183-26373262,26373287-26373420,
           26373546-26373689,26373809-26373919,26374165-26374305,
           26376839-26376964,26377072-26377263
          Length = 418

 Score = 40.3 bits (90), Expect = 0.001
 Identities = 29/85 (34%), Positives = 40/85 (47%), Gaps = 6/85 (7%)
 Frame = -2

Query: 284 YRSFTPPRYDLSLITA--PVFLHYVDDDIFADVRDVRKLQIEL---GRPVGMFRVPHAT- 123
           Y    PP YD++ I A  P+FL Y   D  +D  DV  L  +L   G       V +   
Sbjct: 331 YGQADPPAYDMAAIPAWFPIFLSYGGRDSLSDPADVALLLDDLRRGGHAGDRLTVQYLPQ 390

Query: 122 FSHLDFMWGSGAKELLYDRTIQIMR 48
            +H DF+ G  AK+L+Y+  I   R
Sbjct: 391 LAHADFVIGVCAKDLVYNDVISFFR 415


>06_03_0893 - 25721576-25722205,25722366-25722443,25722628-25723560
          Length = 546

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = -1

Query: 147 NVQSTTCNFQSS*FHVGIR-CQGITI*QNDSNNEITRGRIKNYYNWQLPD 1
           N+     NF+ + F  G R C GI      +N E+    +  ++NWQLPD
Sbjct: 461 NIDFKGTNFEYTPFGAGRRMCPGIAF--GLANVELMLASLLYHFNWQLPD 508


>01_06_1202 +
           35396165-35396260,35396398-35396549,35396694-35396938,
           35397044-35398350
          Length = 599

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = -2

Query: 488 VFFQAMCTNMLFAFAGRSEDMH-NATMLPVKLGHT 387
           VF+Q +C     A   R ++MH   T +PVK G T
Sbjct: 217 VFYQPVCVRQCVANLQRHDNMHAETTAVPVKPGET 251


>08_01_0397 - 3509186-3510291,3510322-3512335
          Length = 1039

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +2

Query: 437 CVQQKRITYLCTSPGKIRHQRKISF 511
           C   + I  LCTS GKI + R+++F
Sbjct: 553 CTPGRMIDILCTSSGKITNLRRVTF 577


>08_01_0353 -
           3107628-3107774,3108177-3108213,3108248-3109164,
           3109210-3110952
          Length = 947

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +2

Query: 437 CVQQKRITYLCTSPGKIRHQRKISF 511
           C   + I  LCTS GKI + R+++F
Sbjct: 414 CTPGRMIDILCTSSGKITNLRRVTF 438


>02_02_0146 - 7171656-7172044,7172383-7175008
          Length = 1004

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = -2

Query: 662 MQAYAPVAYLEFNANRLLKLIAPHANSIEALTSL-IGINELFG 537
           M  +A +  L+   NRL  LI P   S+  LTSL +  N++ G
Sbjct: 494 MSRFANLTELDLAGNRLSGLIPPSMQSLTKLTSLNLSSNQISG 536


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,199,846
Number of Sequences: 37544
Number of extensions: 383302
Number of successful extensions: 832
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 811
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 831
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -