Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12b14r
         (693 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53067| Best HMM Match : No HMM Matches (HMM E-Value=.)             120   8e-28
SB_26325| Best HMM Match : No HMM Matches (HMM E-Value=.)              94   8e-20
SB_16276| Best HMM Match : No HMM Matches (HMM E-Value=.)              93   1e-19
SB_14579| Best HMM Match : No HMM Matches (HMM E-Value=.)              91   6e-19
SB_39520| Best HMM Match : Abhydrolase_1 (HMM E-Value=2)               71   1e-12
SB_53126| Best HMM Match : No HMM Matches (HMM E-Value=.)              40   0.003
SB_21051| Best HMM Match : Abhydro_lipase (HMM E-Value=1.8e-33)        40   0.003
SB_28115| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.29 
SB_36932| Best HMM Match : HTH_8 (HMM E-Value=1.4)                     30   1.5  
SB_36994| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_37611| Best HMM Match : 7tm_1 (HMM E-Value=5.7e-13)                 29   4.7  
SB_56618| Best HMM Match : DUF1213 (HMM E-Value=0.022)                 28   6.2  
SB_22490| Best HMM Match : Fz (HMM E-Value=8.3e-32)                    28   6.2  

>SB_53067| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 668

 Score =  120 bits (290), Expect = 8e-28
 Identities = 68/216 (31%), Positives = 108/216 (50%), Gaps = 1/216 (0%)
 Frame = -2

Query: 689  PEYNSKIIAMQAYAPVAYLEFNANRLLKLIAPHANSIEALTSLIGINELFGRSDFFTNVG 510
            P    K+ A  A APV+ +  +    LK +A  +  IE L  ++G+ +     D    + 
Sbjct: 450  PAVIQKVKAFYALAPVSTVS-HMGGALKYLAYLSPEIEFLFKVLGVRDFLPTDDVMRVLA 508

Query: 509  MRFCADGVFFQAMCTNMLFAFAGRSEDMHNATMLPVKLGHTPAGIAVRQIAHYGQLINNN 330
               C    + + +C++ LF  AG      N T LP+ + HTPAG +V+ + H+ Q+    
Sbjct: 509  DLVCRPD-YIRVVCSDFLFLIAGMDRSQLNETRLPIYISHTPAGTSVKNVVHFAQIFREK 567

Query: 329  FFRRYDHGRL-KNWRVYRSFTPPRYDLSLITAPVFLHYVDDDIFADVRDVRKLQIELGRP 153
             F+ YD+G   KN   Y   TPP+Y++S +  P  L++   D+ AD  DV  L  +L  P
Sbjct: 568  KFQMYDYGSAEKNKHKYNQDTPPQYNVSAVKVPSALYWGGHDVLADPTDVEDLLAKL--P 625

Query: 152  VGMFRVPHATFSHLDFMWGSGAKELLYDRTIQIMRS 45
              M+     T+ HLDF+W   A  L+YD  I+ ++S
Sbjct: 626  HQMYNKYLPTWDHLDFIWALDAASLVYDDVIRHIKS 661


>SB_26325| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 130

 Score = 94.3 bits (224), Expect = 8e-20
 Identities = 46/125 (36%), Positives = 71/125 (56%), Gaps = 1/125 (0%)
 Frame = -2

Query: 416 TMLPVKLGHTPAGIAVRQIAHYGQLINNNFFRRYDHGRL-KNWRVYRSFTPPRYDLSLIT 240
           T LP+ + HTPAG +V+ + H+ Q+     F+ YD+G   KN   Y   TPP+Y++S + 
Sbjct: 1   TRLPIYISHTPAGTSVKNVVHFAQIFREKKFQMYDYGSAEKNKHKYNQDTPPQYNVSAVK 60

Query: 239 APVFLHYVDDDIFADVRDVRKLQIELGRPVGMFRVPHATFSHLDFMWGSGAKELLYDRTI 60
            P  L++   D+ AD  DV+ L  +L  P  M+     T+ HLDF+W   A  L+YD  I
Sbjct: 61  VPSALYWGGHDVLADPTDVKDLLAKL--PHQMYNKYLPTWDHLDFIWALDAASLVYDDVI 118

Query: 59  QIMRS 45
           + ++S
Sbjct: 119 RHIKS 123


>SB_16276| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 130

 Score = 93.5 bits (222), Expect = 1e-19
 Identities = 46/125 (36%), Positives = 70/125 (56%), Gaps = 1/125 (0%)
 Frame = -2

Query: 416 TMLPVKLGHTPAGIAVRQIAHYGQLINNNFFRRYDHGRL-KNWRVYRSFTPPRYDLSLIT 240
           T LP+ + HTPAG +V+ + H+ Q+     F+ YD+G   KN   Y   TPP+Y++S + 
Sbjct: 1   TRLPIYISHTPAGTSVKNVVHFAQIFREKKFQMYDYGSAEKNKHKYNQDTPPQYNVSAVK 60

Query: 239 APVFLHYVDDDIFADVRDVRKLQIELGRPVGMFRVPHATFSHLDFMWGSGAKELLYDRTI 60
            P  L++   D+ AD  DV  L  +L  P  M+     T+ HLDF+W   A  L+YD  I
Sbjct: 61  VPSALYWGGHDVLADPTDVEDLLAKL--PHQMYNKYLPTWDHLDFIWALDAASLVYDDVI 118

Query: 59  QIMRS 45
           + ++S
Sbjct: 119 RHIKS 123


>SB_14579| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 129

 Score = 91.5 bits (217), Expect = 6e-19
 Identities = 46/125 (36%), Positives = 69/125 (55%)
 Frame = -2

Query: 416 TMLPVKLGHTPAGIAVRQIAHYGQLINNNFFRRYDHGRLKNWRVYRSFTPPRYDLSLITA 237
           T LPV + HTPAG +V+ + HY Q+  +  F  YD+G+  N + Y   TPP+Y++S IT 
Sbjct: 1   TRLPVYISHTPAGTSVKNMIHYAQMYKSKKFEMYDYGK-DNIKRYGQNTPPQYNISAITV 59

Query: 236 PVFLHYVDDDIFADVRDVRKLQIELGRPVGMFRVPHATFSHLDFMWGSGAKELLYDRTIQ 57
           P  L++  +D  AD  DV  L   L     +       + HLDF+WG  A EL+YD  + 
Sbjct: 60  PTMLYWGGNDWLADPDDVSLLMKALPPKTLIDNKELKAWQHLDFIWGLDAAELVYDDIVT 119

Query: 56  IMRSL 42
            ++ +
Sbjct: 120 RIKKM 124


>SB_39520| Best HMM Match : Abhydrolase_1 (HMM E-Value=2)
          Length = 265

 Score = 70.5 bits (165), Expect = 1e-12
 Identities = 38/149 (25%), Positives = 73/149 (48%)
 Frame = -2

Query: 491 GVFFQAMCTNMLFAFAGRSEDMHNATMLPVKLGHTPAGIAVRQIAHYGQLINNNFFRRYD 312
           G + + +C +++    G      N T +PV + H   G + + I H+ Q++  N  +++D
Sbjct: 117 GKWTEKLCYDLMETVVGFDSPNINETRVPVYVSHFFEGTSFKDIVHFSQMMYQNRCQKFD 176

Query: 311 HGRLKNWRVYRSFTPPRYDLSLITAPVFLHYVDDDIFADVRDVRKLQIELGRPVGMFRVP 132
           +G   N + Y   TPP   +  +  P  L Y + D   D  D + L+  +   V    + 
Sbjct: 177 YGEAGNMKRYNKTTPPLCHVQDMPTPTVLFYGEKDGLGDPVDAQALKSLVQNLVHSEEMK 236

Query: 131 HATFSHLDFMWGSGAKELLYDRTIQIMRS 45
              ++HLDF++G  A +LLY R + ++++
Sbjct: 237 E--WNHLDFLYGVDAFKLLYPRIVDLLKA 263


>SB_53126| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 103

 Score = 39.5 bits (88), Expect = 0.003
 Identities = 22/73 (30%), Positives = 37/73 (50%)
 Frame = -2

Query: 269 PPRYDLSLITAPVFLHYVDDDIFADVRDVRKLQIELGRPVGMFRVPHATFSHLDFMWGSG 90
           PP Y +  +  P  L     D  AD  DV +L+  +   V    +P   ++H DF++G  
Sbjct: 3   PPHYRVKDMDVPTVLFSGSHDTLADPLDVGELKPRIQNLVHSEEIPG--WNHADFLFGMD 60

Query: 89  AKELLYDRTIQIM 51
           A+ LLY + +++M
Sbjct: 61  AERLLYRKIVKMM 73


>SB_21051| Best HMM Match : Abhydro_lipase (HMM E-Value=1.8e-33)
          Length = 991

 Score = 39.5 bits (88), Expect = 0.003
 Identities = 13/47 (27%), Positives = 28/47 (59%)
 Frame = -2

Query: 422 NATMLPVKLGHTPAGIAVRQIAHYGQLINNNFFRRYDHGRLKNWRVY 282
           N + +PV + H  +G + + + H+GQ++ +   ++Y++G   NW  Y
Sbjct: 347 NMSRVPVIMSHWGSGTSFKNMVHFGQMVTSGKCQKYNYGYFYNWMKY 393


>SB_28115| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 698

 Score = 32.7 bits (71), Expect = 0.29
 Identities = 16/56 (28%), Positives = 28/56 (50%)
 Frame = -2

Query: 503 FCADGVFFQAMCTNMLFAFAGRSEDMHNATMLPVKLGHTPAGIAVRQIAHYGQLIN 336
           FC  G +   +C ++     G  +   N + +PV   H P+G + + I H+GQ+ N
Sbjct: 205 FCG-GKYKAKLCYDISELIFGFDDGNANMSRVPVFFTHFPSGTSFKNIIHFGQVHN 259


>SB_36932| Best HMM Match : HTH_8 (HMM E-Value=1.4)
          Length = 721

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 18/42 (42%), Positives = 24/42 (57%)
 Frame = -1

Query: 309 RTFEKLEGLQKFHTAKI*PVSYNRPCISTLR*RRHLC*CKGC 184
           RTF++L+G++K H+ K  PV      IST   R   C C GC
Sbjct: 583 RTFKELKGIRKLHSVKTTPVQCK---IST---RLRSCLCFGC 618


>SB_36994| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 618

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 18/60 (30%), Positives = 32/60 (53%)
 Frame = -1

Query: 471 VHKYVIRFCWTQ*RHAQCDYVACETRTYTRRHCCQADSALRSTHQQQFLQTI*SRTFEKL 292
           ++ YV + C ++     C    C ++T  RR   + +S+L STHQ+  LQT+   + + L
Sbjct: 264 IYLYVSKACSSK---NVCLVSCCCSKTRARRRS-KGESSLNSTHQKNTLQTLNGNSIQLL 319


>SB_37611| Best HMM Match : 7tm_1 (HMM E-Value=5.7e-13)
          Length = 403

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
 Frame = -2

Query: 539 GRS-DFFTNVGMR-FCADGVFFQAMCTNMLF 453
           GR+ DF TN  +R FCA G++  +MC   ++
Sbjct: 271 GRAVDFLTNEYLRWFCAIGIYISSMCNPFIY 301


>SB_56618| Best HMM Match : DUF1213 (HMM E-Value=0.022)
          Length = 1421

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = -2

Query: 269  PPRYDLSLITAPVFLHYVDDDIFADVRDVRKLQIELGRPV 150
            P   DL + T+P  + ++DD++ A ++  R+L     RPV
Sbjct: 1005 PNNIDLHVFTSPDMIEHMDDELKAFIQQERELFRTPDRPV 1044


>SB_22490| Best HMM Match : Fz (HMM E-Value=8.3e-32)
          Length = 308

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = -2

Query: 425 HNATMLPVKLGHTPAGIAVRQIAHYGQLINNN 330
           +N T LP  LGHT       +I  Y QLI+ N
Sbjct: 38  YNMTRLPNHLGHTSQRQIEHEINEYSQLISAN 69


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,740,449
Number of Sequences: 59808
Number of extensions: 471603
Number of successful extensions: 910
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 840
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 900
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1805522550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)