Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12b14r
         (693 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g15230.1 68415.m01737 lipase family protein similar to SP|P07...    83   1e-16
At5g14180.1 68418.m01658 lipase family protein similar to SP|Q64...    58   4e-09
At3g23280.2 68416.m02935 zinc finger (C3HC4-type RING finger) fa...    28   5.1  
At3g23280.1 68416.m02934 zinc finger (C3HC4-type RING finger) fa...    28   5.1  
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar...    28   5.1  
At3g57570.1 68416.m06410 expressed protein                             28   6.8  
At3g16090.1 68416.m02033 zinc finger (C3HC4-type RING finger) fa...    27   8.9  

>At2g15230.1 68415.m01737 lipase family protein similar to SP|P07098
           Triacylglycerol lipase, gastric precursor (EC 3.1.1.3)
           {Homo sapiens}; contains Pfam profile PF04083:
           ab-hydrolase associated lipase region
          Length = 393

 Score = 83.4 bits (197), Expect = 1e-16
 Identities = 63/219 (28%), Positives = 103/219 (47%), Gaps = 3/219 (1%)
 Frame = -2

Query: 692 RPEYNSKIIAMQAYAPVAYLEFNANRLL-KLIAPHANSIEALTSLIGINELFGRSDFFTN 516
           +P     + A     P++YL+     L+ +++  H   ++ +   +G++++  RSD    
Sbjct: 178 QPHVAEMVEAAALLCPISYLDHVTAPLVERMVFMH---LDQMVVALGLHQINFRSDMLVK 234

Query: 515 VGMRFCADGVFFQAMCTNMLFAFAGRSEDMHNATMLPVKLGHTPAGIAVRQIAHYGQLIN 336
           +    C +G      CT+ L +  G +    NA+ +   L + P   +V+ I H  Q+I 
Sbjct: 235 LVDSLC-EG---HMDCTDFLTSITG-TNCCFNASKIEYYLDYEPHPSSVKNIRHLFQMIR 289

Query: 335 NNFFRRYDHGRLKNWRVYRSFTPPRYDLSLITA--PVFLHYVDDDIFADVRDVRKLQIEL 162
              F +YD+G  KN R Y    PP + LS I A  P+++ Y   D  ADV DV     EL
Sbjct: 290 KGTFAQYDYGYFKNLRTYGLSKPPEFILSHIPASLPMWMGYGGTDGLADVTDVEHTLAEL 349

Query: 161 GRPVGMFRVPHATFSHLDFMWGSGAKELLYDRTIQIMRS 45
             P     +    + H+DF+ GS AKE +Y   IQ  R+
Sbjct: 350 --PSSPELLYLEDYGHIDFVLGSSAKEDVYKHMIQFFRA 386


>At5g14180.1 68418.m01658 lipase family protein similar to SP|Q64194
           Lysosomal acid lipase/cholesteryl ester hydrolase
           precursor (EC 3.1.1.13) {Rattus norvegicus}; contains
           Pfam profile PF04083: ab-hydrolase associated lipase
           region
          Length = 418

 Score = 58.4 bits (135), Expect = 4e-09
 Identities = 51/200 (25%), Positives = 93/200 (46%), Gaps = 5/200 (2%)
 Frame = -2

Query: 650 APVAYLEFNANRLLKLIAPHANSIEALTSLIGINELFGRSDFFTNVGMRFCADGVFFQAM 471
           +PVAYL  +   ++  IA      EA TS++G  E   +S    +     C         
Sbjct: 216 SPVAYLS-HMTTVIGDIAAKTFLAEA-TSILGWPEFNPKSGLVGDFIKAICLKAGID--- 270

Query: 470 CTNMLFAFAGRSEDMHNATMLPVKLGHTPAGIAVRQIAHYGQLINNNFFRRYDHGRL-KN 294
           C +++    G++  + NA+ + + L + P   + + + H  Q + +   R+Y++G   +N
Sbjct: 271 CYDLVSVITGKNCCL-NASTIDLFLANEPQSTSTKNMIHLAQTVRDKELRKYNYGSSDRN 329

Query: 293 WRVYRSFTPPRYDLSLIT--APVFLHYVDDDIFADVRDVRKLQIELG-RPVGMFRVPHAT 123
            + Y    PP Y++S I    P+F  Y   D  ADV+DV  L  +     +    V    
Sbjct: 330 IKHYGQAIPPAYNISAIPHELPLFFSYGGLDSLADVKDVEFLLDQFKYHDIDKMNVQFVK 389

Query: 122 -FSHLDFMWGSGAKELLYDR 66
            ++H DF+ G  AK+++Y++
Sbjct: 390 DYAHADFIMGVTAKDVVYNQ 409


>At3g23280.2 68416.m02935 zinc finger (C3HC4-type RING finger)
           family protein / ankyrin repeat family protein contains
           Pfam profile: PF00097 zinc finger, C3HC4 type (RING
           finger) and Pfam profile: PF00023 ankyrin repeat
          Length = 438

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 17/35 (48%), Positives = 20/35 (57%)
 Frame = +1

Query: 355 CAICLTAMPAGVCPSFTGNIVALCMSSLRPAKANN 459
           CAICL A    VC    G+ VA CMS L+  K+ N
Sbjct: 387 CAICLDAPSEAVCVP-CGH-VAGCMSCLKEIKSKN 419


>At3g23280.1 68416.m02934 zinc finger (C3HC4-type RING finger)
           family protein / ankyrin repeat family protein contains
           Pfam profile: PF00097 zinc finger, C3HC4 type (RING
           finger) and Pfam profile: PF00023 ankyrin repeat
          Length = 462

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 17/35 (48%), Positives = 20/35 (57%)
 Frame = +1

Query: 355 CAICLTAMPAGVCPSFTGNIVALCMSSLRPAKANN 459
           CAICL A    VC    G+ VA CMS L+  K+ N
Sbjct: 411 CAICLDAPSEAVCVP-CGH-VAGCMSCLKEIKSKN 443


>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
           RNA helicase [Rattus norvegicus] GI:897915; contains
           Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
           Helicase conserved C-terminal domain
          Length = 1166

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +2

Query: 437 CVQQKRITYLCTSPGKIRHQRKISF 511
           C   + I  LCTS GKI + R+++F
Sbjct: 658 CTPGRMIDILCTSSGKITNLRRVTF 682


>At3g57570.1 68416.m06410 expressed protein 
          Length = 1057

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 14/30 (46%), Positives = 20/30 (66%)
 Frame = -2

Query: 644 VAYLEFNANRLLKLIAPHANSIEALTSLIG 555
           V  L F+++R+LKLI   A S++   SLIG
Sbjct: 587 VTGLTFDSDRVLKLIPEWARSVQNWNSLIG 616


>At3g16090.1 68416.m02033 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 492

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
 Frame = +2

Query: 431 LHCVQQKRITYLCTSP--GKIRHQRKISF 511
           LH + QKR+ Y+ T+P   K+ H R +SF
Sbjct: 116 LHWLAQKRVEYIETTPSVSKLSHFRIVSF 144


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,817,692
Number of Sequences: 28952
Number of extensions: 316010
Number of successful extensions: 698
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 685
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 696
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1477286152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)