BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fmgV12b14f (625 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPCC1672.09 |||triglyceride lipase-cholesterol esterase |Schizos... 116 3e-27 SPBC16A3.12c |||triglyceride lipase-cholesterol esterase |Schizo... 116 3e-27 SPBC14C8.15 |||triglyceride lipase-cholesterol esterase |Schizos... 96 3e-21 SPBC543.04 |||UPF0171 family protein|Schizosaccharomyces pombe|c... 27 1.7 SPAC2F7.04 |pmc2|med1|RNA polymerase II holoenzyme mediator comp... 27 2.2 SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces ... 26 5.1 SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe... 26 5.1 SPCC1259.08 |||conserved fungal protein|Schizosaccharomyces pomb... 25 6.7 SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 25 6.7 SPAC2G11.03c |vps45||vacuolar sorting protein Vps 45|Schizosacch... 25 6.7 SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pomb... 25 8.9 >SPCC1672.09 |||triglyceride lipase-cholesterol esterase |Schizosaccharomyces pombe|chr 3|||Manual Length = 467 Score = 116 bits (279), Expect = 3e-27 Identities = 68/149 (45%), Positives = 84/149 (56%), Gaps = 5/149 (3%) Frame = +2 Query: 191 GYPVEVHKVVTEDGYILEMQRIPHGRDQNNR---PDPRK-PAVLVMHGLFASAADWVL-M 355 GY VE H V TED YIL + RI +D R P P+K P V HGL ++ WV + Sbjct: 89 GYYVEDHLVRTEDDYILCIHRI--SKDSPGRIGSPHPKKLPVVYCHHGLLMNSEVWVCNV 146 Query: 356 GPGLGLAYILAEAGYDVWLGNARGTYYSRAHTKLDPDNDSEFWKFSWEEIGTRDLPAMID 535 P L + L GYDVWLGN RG YSR H + D D EFW FS ++ D+P ID Sbjct: 147 DPRNCLVFDLVNKGYDVWLGNNRGNKYSRQHLRFD-STDKEFWDFSIDDFAQYDIPDTID 205 Query: 536 YTLKVAGKRRLHYIGHSQGTTVFWAMGSL 622 Y LK +G+ +L YIG SQGT +A S+ Sbjct: 206 YILKTSGQTKLTYIGFSQGTAQAFASLSI 234 >SPBC16A3.12c |||triglyceride lipase-cholesterol esterase |Schizosaccharomyces pombe|chr 2|||Manual Length = 443 Score = 116 bits (279), Expect = 3e-27 Identities = 58/145 (40%), Positives = 83/145 (57%), Gaps = 1/145 (0%) Frame = +2 Query: 164 DIVGLITKYGYPVEVHKVVTEDGYILEMQRIPHGRDQNNRPDPRKPAVLVMHGLFASAAD 343 +I + +GY VE H V T+D +IL + RI H + ++ + V HGL ++ Sbjct: 74 NIYEICEAFGYRVEEHLVRTQDNFILCLHRITHPKQSQHK----REVVYCHHGLMTNSEL 129 Query: 344 WVLMGPG-LGLAYILAEAGYDVWLGNARGTYYSRAHTKLDPDNDSEFWKFSWEEIGTRDL 520 WV + L ++L E+GYDVWLGN RG YSR H P D EFW FS +++ D+ Sbjct: 130 WVAVNESERSLPFVLIESGYDVWLGNNRGNKYSRKHITYKP-KDEEFWNFSLDDMAMFDI 188 Query: 521 PAMIDYTLKVAGKRRLHYIGHSQGT 595 P +DY L+ G+ +L+YIG SQGT Sbjct: 189 PDTVDYILRETGREKLNYIGFSQGT 213 >SPBC14C8.15 |||triglyceride lipase-cholesterol esterase |Schizosaccharomyces pombe|chr 2|||Manual Length = 460 Score = 96.3 bits (229), Expect = 3e-21 Identities = 53/154 (34%), Positives = 78/154 (50%), Gaps = 1/154 (0%) Frame = +2 Query: 164 DIVGLITKYGYPVEVHKVVTEDGYILEMQRIPHGRDQNNRPDPRKPAVLVMHGLFASAAD 343 D + L +GY +E H V T DGY+L + R+ + P VL +HGL ++ Sbjct: 74 DTIDLCALHGYDLEEHFVRTTDGYLLGLHRVYKKKKGKIEELNYLPPVLFIHGLMMNSES 133 Query: 344 WVL-MGPGLGLAYILAEAGYDVWLGNARGTYYSRAHTKLDPDNDSEFWKFSWEEIGTRDL 520 WV + + + L E GYDVWLGN RG YS + K N +FW FS + I D+ Sbjct: 134 WVCNLKKEDAIPFALVEQGYDVWLGNLRGNKYSIKNIKFSSQN-PKFWDFSLDSIAIFDI 192 Query: 521 PAMIDYTLKVAGKRRLHYIGHSQGTTVFWAMGSL 622 P+++ Y L V + +G SQG + +A S+ Sbjct: 193 PSIVKYILSVNSFDSISLVGFSQGAILAFAALSI 226 >SPBC543.04 |||UPF0171 family protein|Schizosaccharomyces pombe|chr 2|||Manual Length = 585 Score = 27.5 bits (58), Expect = 1.7 Identities = 13/38 (34%), Positives = 18/38 (47%), Gaps = 1/38 (2%) Frame = -3 Query: 440 WSNMYHVRFQATHHNQLQPKCMLSQ-DLDPSEPSQQQK 330 W VR QATHHN + + DLD S+ + + Sbjct: 27 WPLQPQVRLQATHHNNDSAESAIGMLDLDDSDDDENNR 64 >SPAC2F7.04 |pmc2|med1|RNA polymerase II holoenzyme mediator complex subunit |Schizosaccharomyces pombe|chr 1|||Manual Length = 454 Score = 27.1 bits (57), Expect = 2.2 Identities = 9/31 (29%), Positives = 19/31 (61%) Frame = -1 Query: 208 NFNWISIFRDKSNNIQKSIFSYIGRVTGTLS 116 N W++ F S ++Q+S F Y+ ++ +L+ Sbjct: 128 NVKWLATFDHSSPSVQQSCFQYLDSLSSSLN 158 >SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces pombe|chr 1|||Manual Length = 582 Score = 25.8 bits (54), Expect = 5.1 Identities = 18/55 (32%), Positives = 21/55 (38%) Frame = +2 Query: 116 AQGSRYSTNVTEDALLDIVGLITKYGYPVEVHKVVTEDGYILEMQRIPHGRDQNN 280 +QG YSTN DA DI Y E Y + PH + QNN Sbjct: 198 SQGYMYSTNTAHDA-TDIPSSFNFYNTQASTAPNPQEINYQWSHEYRPHTQYQNN 251 >SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe|chr 2|||Manual Length = 1465 Score = 25.8 bits (54), Expect = 5.1 Identities = 10/40 (25%), Positives = 19/40 (47%) Frame = -2 Query: 390 SAKMYAKPRPGPIRTQSAAEAKSPCITKTAGFLGSGRLFW 271 S+ Y + PIR + + K C+ +T + G++ W Sbjct: 849 SSNKYKSRKRNPIRQKVTEDDKGKCVAQTDELVQRGKVKW 888 >SPCC1259.08 |||conserved fungal protein|Schizosaccharomyces pombe|chr 3|||Manual Length = 394 Score = 25.4 bits (53), Expect = 6.7 Identities = 12/31 (38%), Positives = 17/31 (54%) Frame = -3 Query: 407 THHNQLQPKCMLSQDLDPSEPSQQQKQKVHA 315 TH N + ML QD+DP+ P + + HA Sbjct: 310 THANSKR-SIMLPQDIDPTFPDSEPEDDGHA 339 >SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||Manual Length = 3971 Score = 25.4 bits (53), Expect = 6.7 Identities = 17/56 (30%), Positives = 27/56 (48%) Frame = -2 Query: 615 PIAQKTVVPCE*PI**SRLFPATFKV*SIIAGRSRVPISSQLNFQNSESLSGSNLV 448 PI TVV PI S + ++ + S+ A S PI+S +S ++ S +V Sbjct: 2543 PITSSTVVNTSTPITSSTVVNSSTPITSLTALNSSTPITSSSVLNSSTPITSSTVV 2598 >SPAC2G11.03c |vps45||vacuolar sorting protein Vps 45|Schizosaccharomyces pombe|chr 1|||Manual Length = 558 Score = 25.4 bits (53), Expect = 6.7 Identities = 12/32 (37%), Positives = 16/32 (50%) Frame = -1 Query: 244 F*DIAIFSNDLVNFNWISIFRDKSNNIQKSIF 149 F D + +NDL +FN I D +N Q F Sbjct: 124 FLDYLVVNNDLASFNIPHIIEDSPDNWQDGAF 155 >SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pombe|chr 3|||Manual Length = 1254 Score = 25.0 bits (52), Expect = 8.9 Identities = 9/15 (60%), Positives = 13/15 (86%) Frame = -3 Query: 98 PRRNPHEGIGEQSPG 54 P+R PH+ +GE+SPG Sbjct: 117 PKR-PHDSLGEESPG 130 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,815,739 Number of Sequences: 5004 Number of extensions: 60603 Number of successful extensions: 230 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 161 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 222 length of database: 2,362,478 effective HSP length: 70 effective length of database: 2,012,198 effective search space used: 275671126 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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