Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV12b14f
(625 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1672.09 |||triglyceride lipase-cholesterol esterase |Schizos... 116 3e-27
SPBC16A3.12c |||triglyceride lipase-cholesterol esterase |Schizo... 116 3e-27
SPBC14C8.15 |||triglyceride lipase-cholesterol esterase |Schizos... 96 3e-21
SPBC543.04 |||UPF0171 family protein|Schizosaccharomyces pombe|c... 27 1.7
SPAC2F7.04 |pmc2|med1|RNA polymerase II holoenzyme mediator comp... 27 2.2
SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces ... 26 5.1
SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe... 26 5.1
SPCC1259.08 |||conserved fungal protein|Schizosaccharomyces pomb... 25 6.7
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 25 6.7
SPAC2G11.03c |vps45||vacuolar sorting protein Vps 45|Schizosacch... 25 6.7
SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pomb... 25 8.9
>SPCC1672.09 |||triglyceride lipase-cholesterol esterase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 467
Score = 116 bits (279), Expect = 3e-27
Identities = 68/149 (45%), Positives = 84/149 (56%), Gaps = 5/149 (3%)
Frame = +2
Query: 191 GYPVEVHKVVTEDGYILEMQRIPHGRDQNNR---PDPRK-PAVLVMHGLFASAADWVL-M 355
GY VE H V TED YIL + RI +D R P P+K P V HGL ++ WV +
Sbjct: 89 GYYVEDHLVRTEDDYILCIHRI--SKDSPGRIGSPHPKKLPVVYCHHGLLMNSEVWVCNV 146
Query: 356 GPGLGLAYILAEAGYDVWLGNARGTYYSRAHTKLDPDNDSEFWKFSWEEIGTRDLPAMID 535
P L + L GYDVWLGN RG YSR H + D D EFW FS ++ D+P ID
Sbjct: 147 DPRNCLVFDLVNKGYDVWLGNNRGNKYSRQHLRFD-STDKEFWDFSIDDFAQYDIPDTID 205
Query: 536 YTLKVAGKRRLHYIGHSQGTTVFWAMGSL 622
Y LK +G+ +L YIG SQGT +A S+
Sbjct: 206 YILKTSGQTKLTYIGFSQGTAQAFASLSI 234
>SPBC16A3.12c |||triglyceride lipase-cholesterol esterase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 443
Score = 116 bits (279), Expect = 3e-27
Identities = 58/145 (40%), Positives = 83/145 (57%), Gaps = 1/145 (0%)
Frame = +2
Query: 164 DIVGLITKYGYPVEVHKVVTEDGYILEMQRIPHGRDQNNRPDPRKPAVLVMHGLFASAAD 343
+I + +GY VE H V T+D +IL + RI H + ++ + V HGL ++
Sbjct: 74 NIYEICEAFGYRVEEHLVRTQDNFILCLHRITHPKQSQHK----REVVYCHHGLMTNSEL 129
Query: 344 WVLMGPG-LGLAYILAEAGYDVWLGNARGTYYSRAHTKLDPDNDSEFWKFSWEEIGTRDL 520
WV + L ++L E+GYDVWLGN RG YSR H P D EFW FS +++ D+
Sbjct: 130 WVAVNESERSLPFVLIESGYDVWLGNNRGNKYSRKHITYKP-KDEEFWNFSLDDMAMFDI 188
Query: 521 PAMIDYTLKVAGKRRLHYIGHSQGT 595
P +DY L+ G+ +L+YIG SQGT
Sbjct: 189 PDTVDYILRETGREKLNYIGFSQGT 213
>SPBC14C8.15 |||triglyceride lipase-cholesterol esterase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 96.3 bits (229), Expect = 3e-21
Identities = 53/154 (34%), Positives = 78/154 (50%), Gaps = 1/154 (0%)
Frame = +2
Query: 164 DIVGLITKYGYPVEVHKVVTEDGYILEMQRIPHGRDQNNRPDPRKPAVLVMHGLFASAAD 343
D + L +GY +E H V T DGY+L + R+ + P VL +HGL ++
Sbjct: 74 DTIDLCALHGYDLEEHFVRTTDGYLLGLHRVYKKKKGKIEELNYLPPVLFIHGLMMNSES 133
Query: 344 WVL-MGPGLGLAYILAEAGYDVWLGNARGTYYSRAHTKLDPDNDSEFWKFSWEEIGTRDL 520
WV + + + L E GYDVWLGN RG YS + K N +FW FS + I D+
Sbjct: 134 WVCNLKKEDAIPFALVEQGYDVWLGNLRGNKYSIKNIKFSSQN-PKFWDFSLDSIAIFDI 192
Query: 521 PAMIDYTLKVAGKRRLHYIGHSQGTTVFWAMGSL 622
P+++ Y L V + +G SQG + +A S+
Sbjct: 193 PSIVKYILSVNSFDSISLVGFSQGAILAFAALSI 226
>SPBC543.04 |||UPF0171 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 585
Score = 27.5 bits (58), Expect = 1.7
Identities = 13/38 (34%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Frame = -3
Query: 440 WSNMYHVRFQATHHNQLQPKCMLSQ-DLDPSEPSQQQK 330
W VR QATHHN + + DLD S+ + +
Sbjct: 27 WPLQPQVRLQATHHNNDSAESAIGMLDLDDSDDDENNR 64
>SPAC2F7.04 |pmc2|med1|RNA polymerase II holoenzyme mediator complex
subunit |Schizosaccharomyces pombe|chr 1|||Manual
Length = 454
Score = 27.1 bits (57), Expect = 2.2
Identities = 9/31 (29%), Positives = 19/31 (61%)
Frame = -1
Query: 208 NFNWISIFRDKSNNIQKSIFSYIGRVTGTLS 116
N W++ F S ++Q+S F Y+ ++ +L+
Sbjct: 128 NVKWLATFDHSSPSVQQSCFQYLDSLSSSLN 158
>SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 582
Score = 25.8 bits (54), Expect = 5.1
Identities = 18/55 (32%), Positives = 21/55 (38%)
Frame = +2
Query: 116 AQGSRYSTNVTEDALLDIVGLITKYGYPVEVHKVVTEDGYILEMQRIPHGRDQNN 280
+QG YSTN DA DI Y E Y + PH + QNN
Sbjct: 198 SQGYMYSTNTAHDA-TDIPSSFNFYNTQASTAPNPQEINYQWSHEYRPHTQYQNN 251
>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1465
Score = 25.8 bits (54), Expect = 5.1
Identities = 10/40 (25%), Positives = 19/40 (47%)
Frame = -2
Query: 390 SAKMYAKPRPGPIRTQSAAEAKSPCITKTAGFLGSGRLFW 271
S+ Y + PIR + + K C+ +T + G++ W
Sbjct: 849 SSNKYKSRKRNPIRQKVTEDDKGKCVAQTDELVQRGKVKW 888
>SPCC1259.08 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 394
Score = 25.4 bits (53), Expect = 6.7
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = -3
Query: 407 THHNQLQPKCMLSQDLDPSEPSQQQKQKVHA 315
TH N + ML QD+DP+ P + + HA
Sbjct: 310 THANSKR-SIMLPQDIDPTFPDSEPEDDGHA 339
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 25.4 bits (53), Expect = 6.7
Identities = 17/56 (30%), Positives = 27/56 (48%)
Frame = -2
Query: 615 PIAQKTVVPCE*PI**SRLFPATFKV*SIIAGRSRVPISSQLNFQNSESLSGSNLV 448
PI TVV PI S + ++ + S+ A S PI+S +S ++ S +V
Sbjct: 2543 PITSSTVVNTSTPITSSTVVNSSTPITSLTALNSSTPITSSSVLNSSTPITSSTVV 2598
>SPAC2G11.03c |vps45||vacuolar sorting protein Vps
45|Schizosaccharomyces pombe|chr 1|||Manual
Length = 558
Score = 25.4 bits (53), Expect = 6.7
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = -1
Query: 244 F*DIAIFSNDLVNFNWISIFRDKSNNIQKSIF 149
F D + +NDL +FN I D +N Q F
Sbjct: 124 FLDYLVVNNDLASFNIPHIIEDSPDNWQDGAF 155
>SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1254
Score = 25.0 bits (52), Expect = 8.9
Identities = 9/15 (60%), Positives = 13/15 (86%)
Frame = -3
Query: 98 PRRNPHEGIGEQSPG 54
P+R PH+ +GE+SPG
Sbjct: 117 PKR-PHDSLGEESPG 130
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,815,739
Number of Sequences: 5004
Number of extensions: 60603
Number of successful extensions: 230
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 222
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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