Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV12b14f
(625 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1358 - 26372559-26372887,26373183-26373262,26373287-263734... 135 3e-32
04_03_0156 - 11963580-11963914,11964422-11964517,11964618-119646... 98 4e-21
09_01_0014 + 357398-357583,360213-360323,360520-360676,361067-36... 93 2e-19
06_03_0852 - 25371461-25371783,25372080-25372159,25372472-253725... 64 9e-11
01_05_0146 + 18591235-18591345,18591662-18591830,18592282-185923... 48 6e-06
01_05_0145 + 18588201-18588242,18588925-18589044,18589201-185894... 41 7e-04
09_04_0366 + 16970063-16970254,16970697-16970720,16972440-16973591 33 0.24
11_04_0332 + 16465360-16465769,16465873-16466272,16466379-164664... 29 4.0
01_01_0409 - 3084821-3084988,3085069-3085155,3085270-3085476,308... 29 4.0
09_04_0713 - 19675437-19675551,19675872-19676017,19676226-196762... 28 6.9
06_01_0390 + 2802334-2802339,2802461-2802618,2802755-2802826,280... 28 6.9
01_06_0343 + 28566513-28566644,28566791-28568494,28569178-285692... 27 9.2
>08_02_1358 -
26372559-26372887,26373183-26373262,26373287-26373420,
26373546-26373689,26373809-26373919,26374165-26374305,
26376839-26376964,26377072-26377263
Length = 418
Score = 135 bits (326), Expect = 3e-32
Identities = 64/145 (44%), Positives = 88/145 (60%), Gaps = 4/145 (2%)
Frame = +2
Query: 179 ITKYGYPVEVHKVVTEDGYILEMQRIPHGR----DQNNRPDPRKPAVLVMHGLFASAADW 346
+ +GYP E H+V T+DGYIL +QRIP GR R+P VL+ HG+ W
Sbjct: 53 VAPFGYPCEEHEVTTQDGYILGLQRIPRGRIGGVTGGGAAAARQP-VLLQHGVLVDGMTW 111
Query: 347 VLMGPGLGLAYILAEAGYDVWLGNARGTYYSRAHTKLDPDNDSEFWKFSWEEIGTRDLPA 526
+L P L YILA+ G+DVW+ N RGT +S H LDP + S +W +SW++I D+PA
Sbjct: 112 LLGSPEESLPYILADQGFDVWIANNRGTRWSSRHVSLDPKSRS-YWNWSWDDIVVNDMPA 170
Query: 527 MIDYTLKVAGKRRLHYIGHSQGTTV 601
++DY G++ HY+GHS GT V
Sbjct: 171 IVDYVCSHTGQKP-HYVGHSMGTLV 194
>04_03_0156 -
11963580-11963914,11964422-11964517,11964618-11964697,
11965250-11965290,11965402-11965548,11965922-11966035,
11968842-11968961,11969491-11969631,11969892-11970014,
11970357-11970566
Length = 468
Score = 98.3 bits (234), Expect = 4e-21
Identities = 46/95 (48%), Positives = 56/95 (58%), Gaps = 2/95 (2%)
Frame = +2
Query: 179 ITKYGYPVEVHKVVTEDGYILEMQRIPHGRDQN--NRPDPRKPAVLVMHGLFASAADWVL 352
+ +GY E H V TEDGYIL +QRIP GR + K VL+ HGL W++
Sbjct: 59 VAPFGYACEEHTVTTEDGYILSLQRIPSGRGETAAGGGGGGKVPVLLQHGLMMDGVTWLM 118
Query: 353 MGPGLGLAYILAEAGYDVWLGNARGTYYSRAHTKL 457
P L YILA+ GYDVW+ N+RGT YSR HT L
Sbjct: 119 NSPNESLGYILADNGYDVWIANSRGTVYSRHHTSL 153
Score = 54.8 bits (126), Expect = 5e-08
Identities = 17/41 (41%), Positives = 31/41 (75%)
Frame = +2
Query: 479 FWKFSWEEIGTRDLPAMIDYTLKVAGKRRLHYIGHSQGTTV 601
+W +SW+E+ ++DL A++ Y AG++++HY+GHS GT +
Sbjct: 200 YWNWSWDELSSKDLSAVVQYVYSQAGQQKMHYVGHSLGTLI 240
>09_01_0014 +
357398-357583,360213-360323,360520-360676,361067-361233,
362012-362122,362206-362349,362436-362476,364134-364174,
364175-364261,365402-365724
Length = 455
Score = 93.1 bits (221), Expect = 2e-19
Identities = 44/115 (38%), Positives = 62/115 (53%), Gaps = 2/115 (1%)
Frame = +2
Query: 176 LITKYGYPVEVHKVVTEDGYILEMQRIPHGRDQNNRPDPRKPAVLVMHGLFASAADWVLM 355
L+ GYP H V T+DG++L +Q IPHG+ N D P V + HGLF W +
Sbjct: 50 LLLPLGYPCTEHNVETKDGFLLSLQHIPHGK--NKAADSTGPPVFLQHGLFQGGDTWFIN 107
Query: 356 GPGLGLAYILAEAGYDVWLGNARGTYYSRAHTKLDPDN--DSEFWKFSWEEIGTR 514
L YILA+ G+DVW+GN RGT +S+ H+ + ++ W W +G R
Sbjct: 108 SAEQSLGYILADNGFDVWIGNVRGTRWSKGHSTFSVHDKVNTLHWN-EWRALGLR 161
Score = 43.6 bits (98), Expect = 1e-04
Identities = 18/39 (46%), Positives = 26/39 (66%)
Frame = +2
Query: 479 FWKFSWEEIGTRDLPAMIDYTLKVAGKRRLHYIGHSQGT 595
FW +SW+E+ DL AM+ Y V + ++ Y+GHSQGT
Sbjct: 209 FWDWSWQELAEYDLLAMLGYVYTVT-QSKILYVGHSQGT 246
>06_03_0852 -
25371461-25371783,25372080-25372159,25372472-25372554,
25372597-25372740,25372836-25372946,25373238-25373354,
25373436-25373562,25374160-25374296
Length = 373
Score = 64.1 bits (149), Expect = 9e-11
Identities = 26/53 (49%), Positives = 35/53 (66%)
Frame = +2
Query: 188 YGYPVEVHKVVTEDGYILEMQRIPHGRDQNNRPDPRKPAVLVMHGLFASAADW 346
+GYP E +KV TEDGYIL ++RIPHG +N +P VL+ HGL + +W
Sbjct: 80 FGYPCEEYKVTTEDGYILSLKRIPHGPHDSNTSTEMRPPVLLFHGLMVAYWEW 132
Score = 48.0 bits (109), Expect = 6e-06
Identities = 18/44 (40%), Positives = 31/44 (70%)
Frame = +2
Query: 479 FWKFSWEEIGTRDLPAMIDYTLKVAGKRRLHYIGHSQGTTVFWA 610
+W++SW+E+ + DLPA++ + G+ ++HYIGHS GT + A
Sbjct: 129 YWEWSWDELASYDLPAVLQFAYDHTGE-KIHYIGHSLGTLMILA 171
>01_05_0146 +
18591235-18591345,18591662-18591830,18592282-18592334,
18592369-18592487,18592618-18593698
Length = 510
Score = 48.0 bits (109), Expect = 6e-06
Identities = 29/65 (44%), Positives = 41/65 (63%), Gaps = 5/65 (7%)
Frame = +2
Query: 392 AGYDVWLGNARGTYYSRAHTKLDPDNDS-EFWKFSWEEIGTRDLPAMIDYTLKV----AG 556
AGYDV+LGN RG SR H +D + S ++WK+S E GT+D+PA+++ K+ G
Sbjct: 125 AGYDVFLGNLRGLV-SREH--VDKNISSYKYWKYSVNEHGTKDMPAIVEEIHKIKTSELG 181
Query: 557 KRRLH 571
K R H
Sbjct: 182 KSRPH 186
>01_05_0145 +
18588201-18588242,18588925-18589044,18589201-18589457,
18589980-18590048,18590091-18590115
Length = 170
Score = 41.1 bits (92), Expect = 7e-04
Identities = 17/28 (60%), Positives = 22/28 (78%)
Frame = +2
Query: 176 LITKYGYPVEVHKVVTEDGYILEMQRIP 259
+IT+ GYP E KVVT DGY+L ++RIP
Sbjct: 135 VITELGYPFEAIKVVTSDGYVLLLERIP 162
>09_04_0366 + 16970063-16970254,16970697-16970720,16972440-16973591
Length = 455
Score = 32.7 bits (71), Expect = 0.24
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Frame = +2
Query: 383 LAEAGYDVWLGNARGTYYSRA-HTKLDPDNDSEFWKFSWEEIGTRDLPAMIDYTLKVAGK 559
L +AG+ V+ + GTY+ HT DND EF ++ E+G +P + Y GK
Sbjct: 370 LKDAGFIVYPSS--GTYFVMVDHTPFGFDNDIEFCEYLIREVGVVAIPPSVFYLNPEDGK 427
Query: 560 RRLHY 574
+ +
Sbjct: 428 NLVRF 432
>11_04_0332 +
16465360-16465769,16465873-16466272,16466379-16466423,
16467113-16467139,16467201-16467266,16467889-16467950,
16468049-16468123,16468218-16468383,16468611-16468734,
16469737-16469843,16469992-16470102
Length = 530
Score = 28.7 bits (61), Expect = 4.0
Identities = 17/59 (28%), Positives = 21/59 (35%), Gaps = 1/59 (1%)
Frame = +2
Query: 374 AYILAEAGYDVWLGNARGTYYSRAHTKLDPDND-SEFWKFSWEEIGTRDLPAMIDYTLK 547
A +L E G +W GNA Y + D + F W G DYT K
Sbjct: 315 AKVLQEKGIHIWDGNASREYLDSVGLAHREEGDLGPVYGFQWRHFGAEYTDMHADYTGK 373
>01_01_0409 -
3084821-3084988,3085069-3085155,3085270-3085476,
3085904-3085985,3086085-3086275,3086410-3086616,
3086709-3086871,3087905-3087960,3088035-3088148,
3088599-3089807
Length = 827
Score = 28.7 bits (61), Expect = 4.0
Identities = 16/50 (32%), Positives = 21/50 (42%), Gaps = 8/50 (16%)
Frame = +1
Query: 40 LYLCYPGDCSPIPS--------CGLRRGTIQAGRSGFPLLYQCN*RCSSG 165
L LC+PG C P P+ CG R T + + +CN R G
Sbjct: 214 LLLCHPGPCPPCPAIVPNAMCFCGSHRETRRCSHQRYSCSGKCNKRLGCG 263
>09_04_0713 -
19675437-19675551,19675872-19676017,19676226-19676259,
19676333-19676473,19676860-19676924,19677022-19677108,
19677186-19677254,19677457-19677548,19677781-19677853,
19678129-19678205,19678490-19678684,19678804-19678861,
19679423-19679517,19680071-19680191
Length = 455
Score = 27.9 bits (59), Expect = 6.9
Identities = 19/55 (34%), Positives = 26/55 (47%)
Frame = +2
Query: 158 LLDIVGLITKYGYPVEVHKVVTEDGYILEMQRIPHGRDQNNRPDPRKPAVLVMHG 322
LL V L TKYG + V+ G IL + H D+ P+P K + V+ G
Sbjct: 117 LLTWVFLKTKYGLRKFIGVVICVAGIILVVFSDVHASDRAKGPNPLKGDLFVIAG 171
>06_01_0390 +
2802334-2802339,2802461-2802618,2802755-2802826,
2802967-2803114,2803234-2803503,2803741-2803904,
2804184-2804236,2804302-2804496,2804597-2804694,
2804787-2804891
Length = 422
Score = 27.9 bits (59), Expect = 6.9
Identities = 22/105 (20%), Positives = 50/105 (47%), Gaps = 9/105 (8%)
Frame = +2
Query: 305 VLVMHGLFASAADW----VLMGPGLGLAYILAEAGYDVWLGNARGTYYSRAHT--KLDPD 466
++++HG+ AS +DW ++ LG + + + + N ++ + T +
Sbjct: 46 LILVHGIIASPSDWTYGEAVLKKRLGDNFFIYGSYIGLHFANENNSFLAIKLTVNYIIAA 105
Query: 467 NDSEFWKFSWEEI---GTRDLPAMIDYTLKVAGKRRLHYIGHSQG 592
+ S + +++ I G R ++D K+AG R++ ++ HS G
Sbjct: 106 SSSNIYTKTFDGIDVAGRRLANEVLDVIQKMAGLRKISFLAHSLG 150
>01_06_0343 +
28566513-28566644,28566791-28568494,28569178-28569240,
28569241-28569310,28570438-28570715,28571886-28571963,
28573017-28573715,28573811-28573913,28574096-28574196,
28574272-28574446,28574843-28575013,28575534-28575634,
28575706-28575771
Length = 1246
Score = 27.5 bits (58), Expect = 9.2
Identities = 21/78 (26%), Positives = 38/78 (48%), Gaps = 2/78 (2%)
Frame = +2
Query: 293 RKPAVLVMHGLFASAADWVLMGPGLGLAYILAEAGYDVWLGNARGTYYSRAHTKLD-PDN 469
R ++++ G+ +A + L PG A ++ G+D W+ RG S ++L D
Sbjct: 753 RNHPLMLLSGVATNAIGFDL-SPGASFARHMSMQGFDTWIVEVRGAGLSMRGSELAVADT 811
Query: 470 DSEFWKFS-WEEIGTRDL 520
S+ + S +EI T+ L
Sbjct: 812 TSDMSRSSALDEITTQKL 829
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,073,590
Number of Sequences: 37544
Number of extensions: 400444
Number of successful extensions: 1083
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1034
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1074
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1513903616
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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