Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV12b11r
(354 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z82275-3|CAL44962.1| 478|Caenorhabditis elegans Hypothetical pr... 28 1.6
Z82265-8|CAB05169.2| 478|Caenorhabditis elegans Hypothetical pr... 28 1.6
U21308-15|AAB93316.2| 412|Caenorhabditis elegans Hypothetical p... 27 2.8
U41034-4|AAY43995.1| 385|Caenorhabditis elegans Hypothetical pr... 27 3.8
Z49937-8|CAD44113.1| 546|Caenorhabditis elegans Hypothetical pr... 27 5.0
Z49867-4|CAD44109.1| 546|Caenorhabditis elegans Hypothetical pr... 27 5.0
Z30317-1|CAA82967.1| 213|Caenorhabditis elegans Hypothetical pr... 27 5.0
U37429-9|AAA79344.3| 796|Caenorhabditis elegans Hypothetical pr... 27 5.0
AC024791-18|AAT81180.1| 438|Caenorhabditis elegans Hypothetical... 26 6.6
AC024791-16|AAF60674.3| 468|Caenorhabditis elegans Hypothetical... 26 6.6
AC024791-15|ABQ13056.1| 464|Caenorhabditis elegans Hypothetical... 26 6.6
Z70265-1|CAA94202.1| 1283|Caenorhabditis elegans Hypothetical pr... 26 8.7
U23514-3|AAC46542.2| 421|Caenorhabditis elegans Hypothetical pr... 26 8.7
U23514-2|AAM48532.1| 418|Caenorhabditis elegans Hypothetical pr... 26 8.7
>Z82275-3|CAL44962.1| 478|Caenorhabditis elegans Hypothetical
protein F02H6.2 protein.
Length = 478
Score = 28.3 bits (60), Expect = 1.6
Identities = 17/48 (35%), Positives = 22/48 (45%)
Frame = +1
Query: 91 QVDRDLL*EVVDGWSNFASEEIDLEVRFDIANSYCSSDVTDNDVVCEG 234
Q +RD EV+D F EE+D EV D + + D D EG
Sbjct: 28 QAERDGWNEVIDNVGEFEDEEVDEEV--DEEEDHAEDEERDTDDEVEG 73
>Z82265-8|CAB05169.2| 478|Caenorhabditis elegans Hypothetical
protein F02H6.2 protein.
Length = 478
Score = 28.3 bits (60), Expect = 1.6
Identities = 17/48 (35%), Positives = 22/48 (45%)
Frame = +1
Query: 91 QVDRDLL*EVVDGWSNFASEEIDLEVRFDIANSYCSSDVTDNDVVCEG 234
Q +RD EV+D F EE+D EV D + + D D EG
Sbjct: 28 QAERDGWNEVIDNVGEFEDEEVDEEV--DEEEDHAEDEERDTDDEVEG 73
>U21308-15|AAB93316.2| 412|Caenorhabditis elegans Hypothetical
protein ZK1290.10 protein.
Length = 412
Score = 27.5 bits (58), Expect = 2.8
Identities = 16/44 (36%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Frame = +2
Query: 164 RLDLTSPIVIAAPMSLTMM-LSARETEAVASATTFSRASPPEAK 292
RLD T P+ A P+ L ++ ++ +E + AS T+ A+PP A+
Sbjct: 59 RLDNTIPVPPALPIGLPIIQITTKEPQPPASLTSLP-AAPPSAQ 101
>U41034-4|AAY43995.1| 385|Caenorhabditis elegans Hypothetical
protein M02D8.7 protein.
Length = 385
Score = 27.1 bits (57), Expect = 3.8
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +2
Query: 140 SRPKRLIWRLDLTSPIVIAAPMSLTMMLSARETE 241
S PK I R++ SP+V AP+ + +L TE
Sbjct: 330 SDPKTYIARIEALSPVVRMAPLRILDILERTRTE 363
>Z49937-8|CAD44113.1| 546|Caenorhabditis elegans Hypothetical
protein C33D3.5 protein.
Length = 546
Score = 26.6 bits (56), Expect = 5.0
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = -1
Query: 123 NNFLEKIPVYLTDYAAEVSRVLEYVAQLVINRLPVNY 13
NNF++ Y+ +++ QL+INR P+NY
Sbjct: 325 NNFIDTAMAYVFTLIGGSKHIVD---QLIINRSPINY 358
>Z49867-4|CAD44109.1| 546|Caenorhabditis elegans Hypothetical
protein C33D3.5 protein.
Length = 546
Score = 26.6 bits (56), Expect = 5.0
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = -1
Query: 123 NNFLEKIPVYLTDYAAEVSRVLEYVAQLVINRLPVNY 13
NNF++ Y+ +++ QL+INR P+NY
Sbjct: 325 NNFIDTAMAYVFTLIGGSKHIVD---QLIINRSPINY 358
>Z30317-1|CAA82967.1| 213|Caenorhabditis elegans Hypothetical
protein T16G12.4 protein.
Length = 213
Score = 26.6 bits (56), Expect = 5.0
Identities = 12/34 (35%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = -1
Query: 105 IPVYLTDY-AAEVSRVLEYVAQLVINRLPVNYSN 7
IP++LTDY A+E R + Y + + + +NY +
Sbjct: 119 IPIFLTDYFASEAQRYMNYPHEWKVFKDFINYES 152
>U37429-9|AAA79344.3| 796|Caenorhabditis elegans Hypothetical
protein F09E5.5 protein.
Length = 796
Score = 26.6 bits (56), Expect = 5.0
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = -1
Query: 159 INLFGREVGPAVNNFLEKIPVYLTDYAAEVSRVLEYVAQLV 37
INL +E + + Y TDY AE S+ E+ + ++
Sbjct: 459 INLTIQEFNELAGKYRDAFTAYKTDYFAERSKYQEFTSNII 499
>AC024791-18|AAT81180.1| 438|Caenorhabditis elegans Hypothetical
protein Y47G6A.19b protein.
Length = 438
Score = 26.2 bits (55), Expect = 6.6
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = -1
Query: 198 AAITIGDVKSNLQINLFGREVGPAVNNFLEKIPVYL 91
AAI NL +N GRE P + N+L+ I +Y+
Sbjct: 158 AAIHTASYFINLIVN--GREEDPQIQNYLDNIVLYI 191
>AC024791-16|AAF60674.3| 468|Caenorhabditis elegans Hypothetical
protein Y47G6A.19a protein.
Length = 468
Score = 26.2 bits (55), Expect = 6.6
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = -1
Query: 198 AAITIGDVKSNLQINLFGREVGPAVNNFLEKIPVYL 91
AAI NL +N GRE P + N+L+ I +Y+
Sbjct: 158 AAIHTASYFINLIVN--GREEDPQIQNYLDNIVLYI 191
>AC024791-15|ABQ13056.1| 464|Caenorhabditis elegans Hypothetical
protein Y47G6A.19c protein.
Length = 464
Score = 26.2 bits (55), Expect = 6.6
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = -1
Query: 198 AAITIGDVKSNLQINLFGREVGPAVNNFLEKIPVYL 91
AAI NL +N GRE P + N+L+ I +Y+
Sbjct: 158 AAIHTASYFINLIVN--GREEDPQIQNYLDNIVLYI 191
>Z70265-1|CAA94202.1| 1283|Caenorhabditis elegans Hypothetical
protein C05A9.1 protein.
Length = 1283
Score = 25.8 bits (54), Expect = 8.7
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = -1
Query: 261 VVAEATASVSLADNIIVSDIGAAITIGDVKSNLQIN 154
VVA +++ A+ IIV + G + +GD K + +N
Sbjct: 597 VVAHRLSTIRNANKIIVMEKGEIVEVGDHKQLIAMN 632
>U23514-3|AAC46542.2| 421|Caenorhabditis elegans Hypothetical
protein F48E8.7a protein.
Length = 421
Score = 25.8 bits (54), Expect = 8.7
Identities = 27/121 (22%), Positives = 54/121 (44%), Gaps = 9/121 (7%)
Frame = -1
Query: 345 SVGSAEGEIRIFSRVLRSFASGGLALENVVAEAT--ASVSLADNIIVSDIGAAITIGDVK 172
S+G ++ + S +R+F +E + A++ + L+DN+ +SD G A+ +
Sbjct: 280 SIGEKLKKLNL-SGTVRNFGINNKHIEILAAKSNYVTDLDLSDNVEISDPGLAVILNKFP 338
Query: 171 SNLQINL---FGREVGPAVNNFLEKIPVYLTDYA----AEVSRVLEYVAQLVINRLPVNY 13
I+L +G + V+ + VYL + + LE + L +NR N+
Sbjct: 339 RLTTISLNRCYGLDPNMVVHFNSKPSLVYLNVHGCVSDTNMELFLEMCSNLKVNRQYFNF 398
Query: 12 S 10
+
Sbjct: 399 T 399
>U23514-2|AAM48532.1| 418|Caenorhabditis elegans Hypothetical
protein F48E8.7b protein.
Length = 418
Score = 25.8 bits (54), Expect = 8.7
Identities = 27/121 (22%), Positives = 54/121 (44%), Gaps = 9/121 (7%)
Frame = -1
Query: 345 SVGSAEGEIRIFSRVLRSFASGGLALENVVAEAT--ASVSLADNIIVSDIGAAITIGDVK 172
S+G ++ + S +R+F +E + A++ + L+DN+ +SD G A+ +
Sbjct: 277 SIGEKLKKLNL-SGTVRNFGINNKHIEILAAKSNYVTDLDLSDNVEISDPGLAVILNKFP 335
Query: 171 SNLQINL---FGREVGPAVNNFLEKIPVYLTDYA----AEVSRVLEYVAQLVINRLPVNY 13
I+L +G + V+ + VYL + + LE + L +NR N+
Sbjct: 336 RLTTISLNRCYGLDPNMVVHFNSKPSLVYLNVHGCVSDTNMELFLEMCSNLKVNRQYFNF 395
Query: 12 S 10
+
Sbjct: 396 T 396
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,983,554
Number of Sequences: 27780
Number of extensions: 131355
Number of successful extensions: 496
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 480
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 496
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 471339352
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -