Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12b11r
         (354 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    25   0.26 
AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex det...    22   1.9  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   2.5  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    21   3.3  
U15955-1|AAA67443.1|   95|Apis mellifera defensin precursor prot...    21   4.3  
AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.         21   4.3  
AY496432-1|AAS75803.1|   95|Apis mellifera defensin/royalisin pr...    21   4.3  
AJ308527-1|CAC33429.1|   57|Apis mellifera defensin protein.           21   4.3  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   5.7  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    20   7.5  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    20   7.5  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    20   7.5  
DQ855485-1|ABH88172.1|  128|Apis mellifera chemosensory protein ...    20   9.9  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    20   9.9  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    20   9.9  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    20   9.9  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    20   9.9  
AJ973400-1|CAJ01447.1|  128|Apis mellifera hypothetical protein ...    20   9.9  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    20   9.9  

>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 25.0 bits (52), Expect = 0.26
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -3

Query: 346 ISRFR*RRNPHFQPRPEVF 290
           I  F+  R PH  P P+VF
Sbjct: 442 IGTFKLHRQPHIYPNPDVF 460


>AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 22.2 bits (45), Expect = 1.9
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = +2

Query: 245 VASATTFSRASPPEAKDLRTRLKMRISP 328
           +  +T+F R  PP A   R  L  R  P
Sbjct: 378 IGPSTSFPRFIPPNAYRFRPPLNPRFGP 405


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 2.5
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +1

Query: 229 EGDGSGSLSNDVLKGKSSGSERP 297
           EG G  SL   + +G+ +G+E P
Sbjct: 731 EGSGGDSLRTLLQRGQETGAEWP 753


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 21.4 bits (43), Expect = 3.3
 Identities = 6/6 (100%), Positives = 6/6 (100%)
 Frame = -3

Query: 199 SCNNYW 182
           SCNNYW
Sbjct: 100 SCNNYW 105


>U15955-1|AAA67443.1|   95|Apis mellifera defensin precursor
          protein.
          Length = 95

 Score = 21.0 bits (42), Expect = 4.3
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -3

Query: 49 RPTRHQQITCKLL 11
          R  RH+++TC LL
Sbjct: 37 RADRHRRVTCDLL 49


>AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.
          Length = 104

 Score = 21.0 bits (42), Expect = 4.3
 Identities = 6/12 (50%), Positives = 10/12 (83%)
 Frame = -3

Query: 46 PTRHQQITCKLL 11
          P RH+++TC +L
Sbjct: 56 PLRHRRVTCDVL 67


>AY496432-1|AAS75803.1|   95|Apis mellifera defensin/royalisin
          precursor protein.
          Length = 95

 Score = 21.0 bits (42), Expect = 4.3
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -3

Query: 49 RPTRHQQITCKLL 11
          R  RH+++TC LL
Sbjct: 37 RADRHRRVTCDLL 49


>AJ308527-1|CAC33429.1|   57|Apis mellifera defensin protein.
          Length = 57

 Score = 21.0 bits (42), Expect = 4.3
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -3

Query: 49 RPTRHQQITCKLL 11
          R  RH+++TC LL
Sbjct: 12 RADRHRRVTCDLL 24


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 20.6 bits (41), Expect = 5.7
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = -3

Query: 166  PPNQSLRTRSWTSRQQLPREDP 101
            PP  S  T S   +QQLP   P
Sbjct: 1269 PPAYSCGTVSVPQQQQLPPSSP 1290


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 20.2 bits (40), Expect = 7.5
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = -3

Query: 250 GYRFRLPRRQHHCQ*HRSC 194
           GY++  P  Q H + H +C
Sbjct: 311 GYKYITPLIQKHLKIHDTC 329


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 20.2 bits (40), Expect = 7.5
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = -3

Query: 55  VRRPTRHQQITCKLLEP 5
           V+ PT+HQ++  K + P
Sbjct: 117 VQPPTKHQKLDQKFIFP 133


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 20.2 bits (40), Expect = 7.5
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = -3

Query: 67  PCSGVRRPTRHQQITCKLLEP 5
           P SG   P  HQ++    L+P
Sbjct: 393 PISGSATPVFHQEMALYYLKP 413


>DQ855485-1|ABH88172.1|  128|Apis mellifera chemosensory protein 4
           protein.
          Length = 128

 Score = 19.8 bits (39), Expect = 9.9
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = -3

Query: 97  LPDGLRSRGQPCS 59
           LPD L +   PCS
Sbjct: 67  LPDALENECSPCS 79


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 19.8 bits (39), Expect = 9.9
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +3

Query: 3   IGSSNLQVIC**RVGRRTPEH 65
           I +S L+ +C   VGR+ P H
Sbjct: 374 IYASLLEFVCVNYVGRKRPMH 394


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 19.8 bits (39), Expect = 9.9
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +3

Query: 3   IGSSNLQVIC**RVGRRTPEH 65
           I +S L+ +C   VGR+ P H
Sbjct: 343 IYASLLEFVCVNYVGRKRPMH 363


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 19.8 bits (39), Expect = 9.9
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +3

Query: 3   IGSSNLQVIC**RVGRRTPEH 65
           I +S L+ +C   VGR+ P H
Sbjct: 394 IYASLLEFVCVNYVGRKRPMH 414


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 19.8 bits (39), Expect = 9.9
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +3

Query: 3   IGSSNLQVIC**RVGRRTPEH 65
           I +S L+ +C   VGR+ P H
Sbjct: 343 IYASLLEFVCVNYVGRKRPMH 363


>AJ973400-1|CAJ01447.1|  128|Apis mellifera hypothetical protein
           protein.
          Length = 128

 Score = 19.8 bits (39), Expect = 9.9
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = -3

Query: 97  LPDGLRSRGQPCS 59
           LPD L +   PCS
Sbjct: 67  LPDALENECSPCS 79


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 19.8 bits (39), Expect = 9.9
 Identities = 9/38 (23%), Positives = 17/38 (44%)
 Frame = +2

Query: 170 DLTSPIVIAAPMSLTMMLSARETEAVASATTFSRASPP 283
           D+T    + +P+       +  +  VAS T +   +PP
Sbjct: 479 DVTLDEAVKSPLGSVSSTESTCSGEVASLTEYHHVAPP 516


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 85,021
Number of Sequences: 438
Number of extensions: 1523
Number of successful extensions: 19
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8184330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)