Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV12b11f
(401 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces po... 29 0.20
SPAC1002.15c |pmc5|med6|mediator complex subunit Pmc5 |Schizosac... 27 0.82
SPCC24B10.02c |||NAD/NADH kinase|Schizosaccharomyces pombe|chr 3... 27 1.1
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 27 1.1
SPBC13A2.02 |||nucleoporin Nup82|Schizosaccharomyces pombe|chr 2... 27 1.4
SPBC1604.18c |||vacuolar sorting protein |Schizosaccharomyces po... 26 1.9
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 25 3.3
SPBC106.04 |ada1||adenosine deaminase Ada1 |Schizosaccharomyces ... 25 3.3
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch... 25 3.3
SPCC132.04c |||NAD-dependent glutamate dehydrogenase |Schizosacc... 25 4.4
SPCC1682.16 |rpt4||19S proteasome regulatory subunit Rpt4|Schizo... 25 4.4
SPBC725.14 |arg6||acetylglutamate synthase Arg6 |Schizosaccharom... 25 4.4
SPAC14C4.07 |||membrane transporter|Schizosaccharomyces pombe|ch... 25 4.4
SPAC23H4.15 |||ribosome biogenesis protein Tsr1 |Schizosaccharom... 25 4.4
SPBC4F6.10 |vps901|vps9a|guanyl-nucleotide exchange factor Vps90... 25 5.8
>SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 811
Score = 29.5 bits (63), Expect = 0.20
Identities = 26/80 (32%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
Frame = +1
Query: 82 ALENVVAEATASVSLADNIIVSDIGAAITIGDVKSNLQINLFGREVGPAVNNFLEKIPVY 261
A E +A S L N+ + AAIT K + + F +E G V E+I
Sbjct: 74 AHEAFIASKIVSGDLKTNL---QVNAAITYCKDKDTIDESEFDKETGVGVVLTPEQIEQL 130
Query: 262 LTDYAAE-VSRVLEYVAQLV 318
+ DY AE S++LE QL+
Sbjct: 131 VGDYVAENKSKILEQRYQLL 150
>SPAC1002.15c |pmc5|med6|mediator complex subunit Pmc5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 216
Score = 27.5 bits (58), Expect = 0.82
Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 5/43 (11%)
Frame = -3
Query: 126 EGDGSGSLSNDVLKGKSSGSERPQD-----AAENADFSFSGTD 13
EG LSND L+ S + P D + ENAD+SFS D
Sbjct: 153 EGYTYPKLSNDNLEVDHSNTNEPADENKNQSIENADYSFSPED 195
>SPCC24B10.02c |||NAD/NADH kinase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 449
Score = 27.1 bits (57), Expect = 1.1
Identities = 14/40 (35%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Frame = +1
Query: 160 AITIGDVKSNLQINLFGREVGPAVNNFL-EKIPVYLTDYA 276
AITIGD + L + +++GP V +F + +P +LT ++
Sbjct: 178 AITIGDNSTLLYTSWLFQKIGPPVLSFSDDDVPGFLTHFS 217
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 27.1 bits (57), Expect = 1.1
Identities = 13/41 (31%), Positives = 19/41 (46%)
Frame = +3
Query: 189 PPNQSLRTRSWTSRQQLPREDPCLPDGLRSRGQPCSGVRRP 311
PP S+ S S +P + P +P L QP + V+ P
Sbjct: 144 PPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSP 184
>SPBC13A2.02 |||nucleoporin Nup82|Schizosaccharomyces pombe|chr
2|||Manual
Length = 803
Score = 26.6 bits (56), Expect = 1.4
Identities = 25/107 (23%), Positives = 49/107 (45%), Gaps = 2/107 (1%)
Frame = -3
Query: 381 REHNLFLIHKYRSSNLQ*SVDDELGDVLQNTADLGCVVRQVDRDLL*EVVDGWSNFASEE 202
R+ NL + +N + + +DEL +VL + V+ ++D + L E D A
Sbjct: 459 RDLNLNFENSEFLNNEEENDEDELSNVLVSIPSRTSVLERLDTNPLNESTDAVVGCAQLY 518
Query: 201 IDL--EVRFDIANSYCSSDVTDNDVVCEGDGSGSLSNDVLKGKSSGS 67
++ + ++ ++ D+D+ G SLSN++ KS G+
Sbjct: 519 YPSLGKILISLTRNWQTTVFDDSDLATMGVNKESLSNEMDYSKSLGT 565
>SPBC1604.18c |||vacuolar sorting protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 449
Score = 26.2 bits (55), Expect = 1.9
Identities = 11/40 (27%), Positives = 21/40 (52%)
Frame = -3
Query: 153 DVTDNDVVCEGDGSGSLSNDVLKGKSSGSERPQDAAENAD 34
+ DN ++ SGS + D + + G+E+ +D EN +
Sbjct: 325 NAVDNKILLIAMSSGSEALDAILAQMGGTEKVEDVLENVN 364
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 25.4 bits (53), Expect = 3.3
Identities = 30/96 (31%), Positives = 48/96 (50%), Gaps = 4/96 (4%)
Frame = +1
Query: 40 IFSRVLRSFASGGLALENVVAEATASVSLADNIIVSDIGAAITIGDVKSNLQINLFGREV 219
++S VL+ A L+ V+A A S D VS + A+ D+ S L I L + V
Sbjct: 952 LWSEVLQDSAYRRPLLDQVIATAVPESS--DPEAVSIVVKALMEVDLPSQL-IELLEKIV 1008
Query: 220 ----GPAVNNFLEKIPVYLTDYAAEVSRVLEYVAQL 315
+ N L+ + ++LT A+ SRV+EY+ +L
Sbjct: 1009 LQPSSFSENANLQNL-LFLTAIKADKSRVMEYIDKL 1043
>SPBC106.04 |ada1||adenosine deaminase Ada1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 846
Score = 25.4 bits (53), Expect = 3.3
Identities = 15/36 (41%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Frame = -3
Query: 123 GDGSGSLSNDVLKGKSSGSERPQ-DAAENADFSFSG 19
G GSG L ND L+ K S P +NA S G
Sbjct: 117 GPGSGKLLNDTLQSKISSIHMPHVQQGDNAVVSSVG 152
>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
Slh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1935
Score = 25.4 bits (53), Expect = 3.3
Identities = 12/41 (29%), Positives = 24/41 (58%)
Frame = +1
Query: 202 LFGREVGPAVNNFLEKIPVYLTDYAAEVSRVLEYVAQLVIN 324
+ R++GP V F+ K+P L + ++ + + V +LV+N
Sbjct: 972 IHNRKMGPTVKKFISKLP--LLNINVDLLPLTKNVLRLVLN 1010
>SPCC132.04c |||NAD-dependent glutamate dehydrogenase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1106
Score = 25.0 bits (52), Expect = 4.4
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = +1
Query: 247 KIPVYLTDYAAEVSRVLEYVAQL 315
K+P + DY EV R+++ A L
Sbjct: 968 KVPTFYADYVNEVKRIIQRNANL 990
>SPCC1682.16 |rpt4||19S proteasome regulatory subunit
Rpt4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 388
Score = 25.0 bits (52), Expect = 4.4
Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Frame = +1
Query: 19 SAEGEIRIFSRVLRSFASGGLALENVVAEA--TASVSLADNIIVSDI-GAAITIGDVK 183
S +GEI + V + + G L NVV EA A D +I SD+ AA + D+K
Sbjct: 320 SKQGEIDYEALVKLTDGTNGADLRNVVTEAGFIAIKEDRDYVIQSDLMSAARKVADLK 377
>SPBC725.14 |arg6||acetylglutamate synthase Arg6
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 500
Score = 25.0 bits (52), Expect = 4.4
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = -1
Query: 209 PKRLIWRLDLTSPI 168
PK LIWR LT+P+
Sbjct: 436 PKELIWRSRLTNPV 449
>SPAC14C4.07 |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 644
Score = 25.0 bits (52), Expect = 4.4
Identities = 11/46 (23%), Positives = 22/46 (47%)
Frame = +3
Query: 213 RSWTSRQQLPREDPCLPDGLRSRGQPCSGVRRPTRHQQITVNYSND 350
+ + SR P + C L+++G C+G +H+ + SN+
Sbjct: 20 KPFRSRTPSPEREYCSDCPLQAKGSACNGNSHSLKHETNGASSSNN 65
>SPAC23H4.15 |||ribosome biogenesis protein Tsr1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 25.0 bits (52), Expect = 4.4
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = -3
Query: 156 SDVTDNDVVCEGDGSGSLSNDVLKGK-SSGSERPQDAAENADF 31
SDV D +V+ E + +SN V + K S E D A++ F
Sbjct: 404 SDVEDTEVIIEDQDNQEISNHVAEEKIDSDEEETIDDAKSEMF 446
>SPBC4F6.10 |vps901|vps9a|guanyl-nucleotide exchange factor Vps901
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 537
Score = 24.6 bits (51), Expect = 5.8
Identities = 14/48 (29%), Positives = 25/48 (52%)
Frame = +1
Query: 187 NLQINLFGREVGPAVNNFLEKIPVYLTDYAAEVSRVLEYVAQLVINRL 330
N Q+ L R+ +N +E+ + + AE+ E + +LV+NRL
Sbjct: 149 NYQVKLI-RDFLKFINEKIEQYEPWASGSQAEIDNAKEGMEKLVLNRL 195
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,439,549
Number of Sequences: 5004
Number of extensions: 26252
Number of successful extensions: 113
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 136158338
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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