Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12b11f
         (401 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    25   0.32 
DQ435325-1|ABD92640.1|  160|Apis mellifera OBP7 protein.               23   1.7  
AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex det...    22   2.3  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   2.3  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   3.0  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    21   4.0  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   6.9  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    20   9.2  

>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 25.0 bits (52), Expect = 0.32
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +3

Query: 9   ISRFR*RRNPHFQPRPEVF 65
           I  F+  R PH  P P+VF
Sbjct: 442 IGTFKLHRQPHIYPNPDVF 460


>DQ435325-1|ABD92640.1|  160|Apis mellifera OBP7 protein.
          Length = 160

 Score = 22.6 bits (46), Expect = 1.7
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +3

Query: 327 ITVNYSNDTCESKINYVL 380
           I  N S D CE+ +N+++
Sbjct: 119 INANKSTDKCENGLNFII 136


>AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 22.2 bits (45), Expect = 2.3
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = -1

Query: 110 VASATTFSRASPPEAKDLRTRLKMRISP 27
           +  +T+F R  PP A   R  L  R  P
Sbjct: 378 IGPSTSFPRFIPPNAYRFRPPLNPRFGP 405


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 22.2 bits (45), Expect = 2.3
 Identities = 8/29 (27%), Positives = 15/29 (51%)
 Frame = +3

Query: 288 PCSGVRRPTRHQQITVNYSNDTCESKINY 374
           P   ++   RH ++    + D C+ +INY
Sbjct: 200 PMPTLKGDGRHMEVIKIKNFDNCDQRINY 228


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 3.0
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -3

Query: 126 EGDGSGSLSNDVLKGKSSGSERP 58
           EG G  SL   + +G+ +G+E P
Sbjct: 731 EGSGGDSLRTLLQRGQETGAEWP 753


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 21.4 bits (43), Expect = 4.0
 Identities = 6/6 (100%), Positives = 6/6 (100%)
 Frame = +3

Query: 156 SCNNYW 173
           SCNNYW
Sbjct: 100 SCNNYW 105


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 20.6 bits (41), Expect = 6.9
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = +3

Query: 189  PPNQSLRTRSWTSRQQLPREDP 254
            PP  S  T S   +QQLP   P
Sbjct: 1269 PPAYSCGTVSVPQQQQLPPSSP 1290


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 20.2 bits (40), Expect = 9.2
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = +3

Query: 105 GYRFRLPRRQHHCQ*HRSC 161
           GY++  P  Q H + H +C
Sbjct: 311 GYKYITPLIQKHLKIHDTC 329


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 97,392
Number of Sequences: 438
Number of extensions: 1644
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10008927
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)