Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV12b11f
(401 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g43630.1 68418.m05333 zinc knuckle (CCHC-type) family protein... 30 0.50
At3g13410.1 68416.m01686 expressed protein 29 1.2
At1g55830.1 68414.m06402 expressed protein similar to M-type 9 p... 29 1.2
At4g01960.1 68417.m00261 expressed protein 28 2.0
At2g43810.1 68415.m05446 small nuclear ribonucleoprotein F, puta... 28 2.7
At1g44120.1 68414.m05096 C2 domain-containing protein / armadill... 28 2.7
At5g15130.1 68418.m01773 WRKY family transcription factor contai... 27 3.5
At1g36730.1 68414.m04569 eukaryotic translation initiation facto... 27 3.5
At5g57940.3 68418.m07250 cyclic nucleotide-regulated ion channel... 27 4.7
At5g57940.2 68418.m07249 cyclic nucleotide-regulated ion channel... 27 4.7
At5g57940.1 68418.m07248 cyclic nucleotide-regulated ion channel... 27 4.7
At4g09790.1 68417.m01608 F-box family protein hypothetical prote... 27 6.2
At3g20660.1 68416.m02615 organic cation transporter family prote... 27 6.2
At5g53480.1 68418.m06646 importin beta-2, putative similar to im... 26 8.2
At5g50115.1 68418.m06206 hypothetical protein temporary automate... 26 8.2
At5g19920.1 68418.m02370 transducin family protein / WD-40 repea... 26 8.2
At1g75820.1 68414.m08807 CLAVATA1 receptor kinase (CLV1) identic... 26 8.2
At1g48120.1 68414.m05370 calcineurin-like phosphoesterase family... 26 8.2
At1g41900.1 68414.m04840 myosin heavy chain-related similar to M... 26 8.2
>At5g43630.1 68418.m05333 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 831
Score = 30.3 bits (65), Expect = 0.50
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Frame = -3
Query: 204 EIDLEVRFDIANSY--CSSDVTDNDVVCEGDGSGSLSNDVLKGKSSGSERPQDAAEN 40
E +E DI N CS +D+ EG+ L N+ L+ +S+GS+ D A N
Sbjct: 126 EDKVETNDDIKNEEAGCSKRSSDSPKAMEGETRDLLVNEQLRMESAGSQEEGDKAHN 182
>At3g13410.1 68416.m01686 expressed protein
Length = 321
Score = 29.1 bits (62), Expect = 1.2
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = -3
Query: 228 GWSNFASEEIDLEVRFDIANSYCSSDVTDNDVVCEGDGSGSLSN 97
GWSNF E LE D+A + ++ +DV + + +L N
Sbjct: 70 GWSNFLCSEKKLEQPVDVALVFIGRELLSSDVSSKRNSDPALVN 113
>At1g55830.1 68414.m06402 expressed protein similar to M-type 9
protein (GI:507127) [Streptococcus pyogenes]
Length = 509
Score = 29.1 bits (62), Expect = 1.2
Identities = 21/79 (26%), Positives = 35/79 (44%), Gaps = 1/79 (1%)
Frame = -1
Query: 242 RKLLTAGP-TSRPKRLIWRLDLTSPIVIAAPMSLTMMLSARETEAVASATTFSRASPPEA 66
RK LTAG SRPK +R D++ +++ T + ++ EAV T + +
Sbjct: 130 RKTLTAGDIASRPKMETFR-DISDDMMVNEDKDETFDMHIQKVEAVLKDLTMTSEKSHSS 188
Query: 65 KDLRTRLKMRISPSAEPTD 9
L + S++ TD
Sbjct: 189 DSLAKNTSANVDFSSQKTD 207
>At4g01960.1 68417.m00261 expressed protein
Length = 236
Score = 28.3 bits (60), Expect = 2.0
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Frame = -3
Query: 213 ASEEIDLEVRFDIANSYCSSDVTDNDVVCEGDGSGSLSNDVLKGKSS--GSERPQD 52
+ EE DL+V + + ++T N V EGD S ++ N V G+ S GSE+ D
Sbjct: 6 SGEEEDLDVDIEDGRFNETQEITTNLVSAEGD-SENVLNHVWSGRLSFDGSEKSAD 60
>At2g43810.1 68415.m05446 small nuclear ribonucleoprotein F,
putative / U6 snRNA-associated Sm-like protein, putative
/ Sm protein F, putative similar to SWISS-PROT:Q9Y4Y8 U6
snRNA-associated Sm-like protein LSm6 [Mus musculus]
Length = 91
Score = 27.9 bits (59), Expect = 2.7
Identities = 14/46 (30%), Positives = 25/46 (54%)
Frame = -3
Query: 234 VDGWSNFASEEIDLEVRFDIANSYCSSDVTDNDVVCEGDGSGSLSN 97
+DG+ N A E+ + V + N+Y + V N+V+ G+LS+
Sbjct: 44 LDGYMNIAMEQTEEYVNGQLKNTYGDAFVRGNNVLYISTTKGTLSD 89
>At1g44120.1 68414.m05096 C2 domain-containing protein /
armadillo/beta-catenin repeat family protein similar to
CCLS 65 [Silene latifolia] GI:2570102; contains Pfam
profiles PF00514: Armadillo/beta-catenin-like repeat,
PF00168: C2 domain
Length = 2114
Score = 27.9 bits (59), Expect = 2.7
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = -3
Query: 162 CSSDVTDNDVVCEGDGSGSLSNDVLKGKSSGSERPQDAAE 43
CSS ++ VV EG+G ++ ++ + KS+ E D+ E
Sbjct: 990 CSSHPSNRLVVMEGNGLEIIAENLQRNKSNTQENSSDSEE 1029
>At5g15130.1 68418.m01773 WRKY family transcription factor contains
Pfam profile: PF03106 WRKY DNA -binding domain; TMV
response-related gene product, Nicotiana tabacum,
EMBL:AB024510
Length = 548
Score = 27.5 bits (58), Expect = 3.5
Identities = 13/53 (24%), Positives = 28/53 (52%)
Frame = -3
Query: 186 RFDIANSYCSSDVTDNDVVCEGDGSGSLSNDVLKGKSSGSERPQDAAENADFS 28
R I+N+ ++ T+N+ C G S L ++++ +G+ Q +++ FS
Sbjct: 475 RHSISNNIQQTNTTNNNKGCGGYFSSLLMSNIMASNQTGASLDQPSSQLPPFS 527
>At1g36730.1 68414.m04569 eukaryotic translation initiation factor
5, putative / eIF-5, putative similar to SP|P55876
Eukaryotic translation initiation factor 5 (eIF-5) {Zea
mays}; contains Pfam profiles PF02020:
eIF4-gamma/eIF5/eIF2-epsilon, PF01873: Domain found in
IF2B/IF5
Length = 439
Score = 27.5 bits (58), Expect = 3.5
Identities = 20/60 (33%), Positives = 27/60 (45%)
Frame = -3
Query: 213 ASEEIDLEVRFDIANSYCSSDVTDNDVVCEGDGSGSLSNDVLKGKSSGSERPQDAAENAD 34
AS E EV I Y D+ D DV+ E G S+ VLK + E Q+A ++
Sbjct: 379 ASAEAAKEVALVIKGLY-DEDILDEDVIVEWYNKGVKSSPVLKNVTPFIEWLQNAESESE 437
>At5g57940.3 68418.m07250 cyclic nucleotide-regulated ion channel /
cyclic nucleotide-gated channel (CNGC5) identical to
cyclic nucleotide and calmodulin-regulated ion channel
(cngc5) GI:4581205 from [Arabidopsis thaliana]
Length = 710
Score = 27.1 bits (57), Expect = 4.7
Identities = 21/64 (32%), Positives = 28/64 (43%)
Frame = -1
Query: 296 RTRLTSAA*SVR*TGIFSRKLLTAGPTSRPKRLIWRLDLTSPIVIAAPMSLTMMLSARET 117
R RL S +G F+R LL G + L W LD S + + P S + + E
Sbjct: 533 RGRLESVTTDGGRSGFFNRSLLKEGEFCGEELLTWALDPKSGVNL--PSSTRTVKALTEV 590
Query: 116 EAVA 105
EA A
Sbjct: 591 EAFA 594
>At5g57940.2 68418.m07249 cyclic nucleotide-regulated ion channel /
cyclic nucleotide-gated channel (CNGC5) identical to
cyclic nucleotide and calmodulin-regulated ion channel
(cngc5) GI:4581205 from [Arabidopsis thaliana]
Length = 717
Score = 27.1 bits (57), Expect = 4.7
Identities = 21/64 (32%), Positives = 28/64 (43%)
Frame = -1
Query: 296 RTRLTSAA*SVR*TGIFSRKLLTAGPTSRPKRLIWRLDLTSPIVIAAPMSLTMMLSARET 117
R RL S +G F+R LL G + L W LD S + + P S + + E
Sbjct: 540 RGRLESVTTDGGRSGFFNRSLLKEGEFCGEELLTWALDPKSGVNL--PSSTRTVKALTEV 597
Query: 116 EAVA 105
EA A
Sbjct: 598 EAFA 601
>At5g57940.1 68418.m07248 cyclic nucleotide-regulated ion channel /
cyclic nucleotide-gated channel (CNGC5) identical to
cyclic nucleotide and calmodulin-regulated ion channel
(cngc5) GI:4581205 from [Arabidopsis thaliana]
Length = 717
Score = 27.1 bits (57), Expect = 4.7
Identities = 21/64 (32%), Positives = 28/64 (43%)
Frame = -1
Query: 296 RTRLTSAA*SVR*TGIFSRKLLTAGPTSRPKRLIWRLDLTSPIVIAAPMSLTMMLSARET 117
R RL S +G F+R LL G + L W LD S + + P S + + E
Sbjct: 540 RGRLESVTTDGGRSGFFNRSLLKEGEFCGEELLTWALDPKSGVNL--PSSTRTVKALTEV 597
Query: 116 EAVA 105
EA A
Sbjct: 598 EAFA 601
>At4g09790.1 68417.m01608 F-box family protein hypothetical protein
-Arabidopsis thaliana;PID:g2245079; contains Pfam
PF00646: F-box domain; contains TIGRFAM TIGR01640: F-box
protein interaction domain
Length = 351
Score = 26.6 bits (56), Expect = 6.2
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +3
Query: 300 VRRPTRHQQITVNYSNDTCESKI 368
+ RP R +Q+ V Y DTC +I
Sbjct: 207 MERPVREEQLAVLYQQDTCLMEI 229
>At3g20660.1 68416.m02615 organic cation transporter family protein
similar to organic cation transporter OCT3 [Rattus
norvegicus] GI:3273722, organic cation transporter 3
[Mus musculus] GI:4454795; contains Pfam profile
PF00083: major facilitator superfamily protein
Length = 534
Score = 26.6 bits (56), Expect = 6.2
Identities = 9/31 (29%), Positives = 22/31 (70%)
Frame = +1
Query: 115 SVSLADNIIVSDIGAAITIGDVKSNLQINLF 207
SV+++ + + G ++ +G++K+NL +N+F
Sbjct: 342 SVAISFTVSIVYYGLSLNVGNLKTNLYLNVF 372
>At5g53480.1 68418.m06646 importin beta-2, putative similar to
importin-beta2 [Oryza sativa (japonica cultivar-group)]
GI:3983665; contains Pfam profile PF03810: Importin-beta
N-terminal domain
Length = 870
Score = 26.2 bits (55), Expect = 8.2
Identities = 15/48 (31%), Positives = 22/48 (45%)
Frame = -3
Query: 270 VRQVDRDLL*EVVDGWSNFASEEIDLEVRFDIANSYCSSDVTDNDVVC 127
VR+ D + + ++ WS+ EEI DI Y D+DV C
Sbjct: 269 VREDDESVALQAIEFWSSICDEEI------DILEEYGGEFAGDSDVPC 310
>At5g50115.1 68418.m06206 hypothetical protein temporary automated
functional assignment
Length = 485
Score = 26.2 bits (55), Expect = 8.2
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = +3
Query: 18 FR*RRNPHFQPRPEVFRF 71
FR R NP PR E+FRF
Sbjct: 409 FRRRSNPRTYPRKELFRF 426
>At5g19920.1 68418.m02370 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
related to TipD protein (SP:O15736, PIR:T08602)
[Dictyostelium discoideum]; related to WD-repeat protein
RBAP1 (GI:9716495) [Zea mays]
Length = 656
Score = 26.2 bits (55), Expect = 8.2
Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = +3
Query: 195 NQSLRTRSWTSRQ-QLPREDPCLPDGLRSRGQPCSGVR 305
N++ + + +R +PRED C P+ R R P VR
Sbjct: 156 NETTQAQPMATRDYNIPREDTCGPEAKRPRSIPDEVVR 193
>At1g75820.1 68414.m08807 CLAVATA1 receptor kinase (CLV1) identical
to receptor kinase (CLV1) GB:AAB58929 GI:2160756
[Arabidopsis thaliana]
Length = 980
Score = 26.2 bits (55), Expect = 8.2
Identities = 15/66 (22%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
Frame = +1
Query: 49 RVLRSFASGGLALENVVAEATASVSLADNIIVSDIGAAITIGDVKSNLQI--NLFGREVG 222
R++++ +G + + L DN ++ ++ GDV + + N F E+
Sbjct: 415 RIVKNLLNGTVPAGLFNLPLVTIIELTDNFFSGELPVTMS-GDVLDQIYLSNNWFSGEIP 473
Query: 223 PAVNNF 240
PA+ NF
Sbjct: 474 PAIGNF 479
>At1g48120.1 68414.m05370 calcineurin-like phosphoesterase family
protein contains Pfam profile: PF00149 calcineurin-like
phosphoesterase
Length = 1338
Score = 26.2 bits (55), Expect = 8.2
Identities = 12/48 (25%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Frame = -3
Query: 234 VDGWSNFASEEIDLEVRFDIANSYCSSDVTDNDVV-CEGDGSGSLSND 94
+D S ++LE+ +D +++T ND C DG+ ++ D
Sbjct: 1148 IDDCSTTGDAAVELEITYDEKLDRVVTEITGNDAAECMTDGNRDIATD 1195
>At1g41900.1 68414.m04840 myosin heavy chain-related similar to
Myosin heavy chain, skeletal muscle, extraocular
(MyHC-eo) (SP:Q9UKX3) {Homo sapiens}
Length = 442
Score = 26.2 bits (55), Expect = 8.2
Identities = 18/55 (32%), Positives = 24/55 (43%)
Frame = -1
Query: 224 GPTSRPKRLIWRLDLTSPIVIAAPMSLTMMLSARETEAVASATTFSRASPPEAKD 60
G S PKR + ++ S +A+P M + EA ASA RA P D
Sbjct: 302 GAPSSPKRARTQPEVVSDQRVASPREERMEPATATPEAAASAIGDPRAGPMAEDD 356
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,555,587
Number of Sequences: 28952
Number of extensions: 143083
Number of successful extensions: 511
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 501
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 511
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 585758608
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -