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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12b11f
         (401 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g43630.1 68418.m05333 zinc knuckle (CCHC-type) family protein...    30   0.50 
At3g13410.1 68416.m01686 expressed protein                             29   1.2  
At1g55830.1 68414.m06402 expressed protein similar to M-type 9 p...    29   1.2  
At4g01960.1 68417.m00261 expressed protein                             28   2.0  
At2g43810.1 68415.m05446 small nuclear ribonucleoprotein F, puta...    28   2.7  
At1g44120.1 68414.m05096 C2 domain-containing protein / armadill...    28   2.7  
At5g15130.1 68418.m01773 WRKY family transcription factor contai...    27   3.5  
At1g36730.1 68414.m04569 eukaryotic translation initiation facto...    27   3.5  
At5g57940.3 68418.m07250 cyclic nucleotide-regulated ion channel...    27   4.7  
At5g57940.2 68418.m07249 cyclic nucleotide-regulated ion channel...    27   4.7  
At5g57940.1 68418.m07248 cyclic nucleotide-regulated ion channel...    27   4.7  
At4g09790.1 68417.m01608 F-box family protein hypothetical prote...    27   6.2  
At3g20660.1 68416.m02615 organic cation transporter family prote...    27   6.2  
At5g53480.1 68418.m06646 importin beta-2, putative similar to im...    26   8.2  
At5g50115.1 68418.m06206 hypothetical protein temporary automate...    26   8.2  
At5g19920.1 68418.m02370 transducin family protein / WD-40 repea...    26   8.2  
At1g75820.1 68414.m08807 CLAVATA1 receptor kinase (CLV1) identic...    26   8.2  
At1g48120.1 68414.m05370 calcineurin-like phosphoesterase family...    26   8.2  
At1g41900.1 68414.m04840 myosin heavy chain-related similar to M...    26   8.2  

>At5g43630.1 68418.m05333 zinc knuckle (CCHC-type) family protein
           contains Pfam domain PF00098: Zinc knuckle
          Length = 831

 Score = 30.3 bits (65), Expect = 0.50
 Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
 Frame = -3

Query: 204 EIDLEVRFDIANSY--CSSDVTDNDVVCEGDGSGSLSNDVLKGKSSGSERPQDAAEN 40
           E  +E   DI N    CS   +D+    EG+    L N+ L+ +S+GS+   D A N
Sbjct: 126 EDKVETNDDIKNEEAGCSKRSSDSPKAMEGETRDLLVNEQLRMESAGSQEEGDKAHN 182


>At3g13410.1 68416.m01686 expressed protein
          Length = 321

 Score = 29.1 bits (62), Expect = 1.2
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = -3

Query: 228 GWSNFASEEIDLEVRFDIANSYCSSDVTDNDVVCEGDGSGSLSN 97
           GWSNF   E  LE   D+A  +   ++  +DV  + +   +L N
Sbjct: 70  GWSNFLCSEKKLEQPVDVALVFIGRELLSSDVSSKRNSDPALVN 113


>At1g55830.1 68414.m06402 expressed protein similar to M-type 9
           protein (GI:507127) [Streptococcus pyogenes]
          Length = 509

 Score = 29.1 bits (62), Expect = 1.2
 Identities = 21/79 (26%), Positives = 35/79 (44%), Gaps = 1/79 (1%)
 Frame = -1

Query: 242 RKLLTAGP-TSRPKRLIWRLDLTSPIVIAAPMSLTMMLSARETEAVASATTFSRASPPEA 66
           RK LTAG   SRPK   +R D++  +++      T  +  ++ EAV    T +      +
Sbjct: 130 RKTLTAGDIASRPKMETFR-DISDDMMVNEDKDETFDMHIQKVEAVLKDLTMTSEKSHSS 188

Query: 65  KDLRTRLKMRISPSAEPTD 9
             L       +  S++ TD
Sbjct: 189 DSLAKNTSANVDFSSQKTD 207


>At4g01960.1 68417.m00261 expressed protein
          Length = 236

 Score = 28.3 bits (60), Expect = 2.0
 Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
 Frame = -3

Query: 213 ASEEIDLEVRFDIANSYCSSDVTDNDVVCEGDGSGSLSNDVLKGKSS--GSERPQD 52
           + EE DL+V  +      + ++T N V  EGD S ++ N V  G+ S  GSE+  D
Sbjct: 6   SGEEEDLDVDIEDGRFNETQEITTNLVSAEGD-SENVLNHVWSGRLSFDGSEKSAD 60


>At2g43810.1 68415.m05446 small nuclear ribonucleoprotein F,
           putative / U6 snRNA-associated Sm-like protein, putative
           / Sm protein F, putative similar to SWISS-PROT:Q9Y4Y8 U6
           snRNA-associated Sm-like protein LSm6 [Mus musculus]
          Length = 91

 Score = 27.9 bits (59), Expect = 2.7
 Identities = 14/46 (30%), Positives = 25/46 (54%)
 Frame = -3

Query: 234 VDGWSNFASEEIDLEVRFDIANSYCSSDVTDNDVVCEGDGSGSLSN 97
           +DG+ N A E+ +  V   + N+Y  + V  N+V+      G+LS+
Sbjct: 44  LDGYMNIAMEQTEEYVNGQLKNTYGDAFVRGNNVLYISTTKGTLSD 89


>At1g44120.1 68414.m05096 C2 domain-containing protein /
            armadillo/beta-catenin repeat family protein similar to
            CCLS 65 [Silene latifolia] GI:2570102; contains Pfam
            profiles PF00514: Armadillo/beta-catenin-like repeat,
            PF00168: C2 domain
          Length = 2114

 Score = 27.9 bits (59), Expect = 2.7
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = -3

Query: 162  CSSDVTDNDVVCEGDGSGSLSNDVLKGKSSGSERPQDAAE 43
            CSS  ++  VV EG+G   ++ ++ + KS+  E   D+ E
Sbjct: 990  CSSHPSNRLVVMEGNGLEIIAENLQRNKSNTQENSSDSEE 1029


>At5g15130.1 68418.m01773 WRKY family transcription factor contains
           Pfam profile: PF03106 WRKY DNA -binding domain; TMV
           response-related gene product, Nicotiana tabacum,
           EMBL:AB024510
          Length = 548

 Score = 27.5 bits (58), Expect = 3.5
 Identities = 13/53 (24%), Positives = 28/53 (52%)
 Frame = -3

Query: 186 RFDIANSYCSSDVTDNDVVCEGDGSGSLSNDVLKGKSSGSERPQDAAENADFS 28
           R  I+N+   ++ T+N+  C G  S  L ++++    +G+   Q +++   FS
Sbjct: 475 RHSISNNIQQTNTTNNNKGCGGYFSSLLMSNIMASNQTGASLDQPSSQLPPFS 527


>At1g36730.1 68414.m04569 eukaryotic translation initiation factor
           5, putative / eIF-5, putative similar to SP|P55876
           Eukaryotic translation initiation factor 5 (eIF-5) {Zea
           mays}; contains Pfam profiles PF02020:
           eIF4-gamma/eIF5/eIF2-epsilon, PF01873: Domain found in
           IF2B/IF5
          Length = 439

 Score = 27.5 bits (58), Expect = 3.5
 Identities = 20/60 (33%), Positives = 27/60 (45%)
 Frame = -3

Query: 213 ASEEIDLEVRFDIANSYCSSDVTDNDVVCEGDGSGSLSNDVLKGKSSGSERPQDAAENAD 34
           AS E   EV   I   Y   D+ D DV+ E    G  S+ VLK  +   E  Q+A   ++
Sbjct: 379 ASAEAAKEVALVIKGLY-DEDILDEDVIVEWYNKGVKSSPVLKNVTPFIEWLQNAESESE 437


>At5g57940.3 68418.m07250 cyclic nucleotide-regulated ion channel /
           cyclic nucleotide-gated channel (CNGC5) identical to
           cyclic nucleotide and calmodulin-regulated ion channel
           (cngc5) GI:4581205 from [Arabidopsis thaliana]
          Length = 710

 Score = 27.1 bits (57), Expect = 4.7
 Identities = 21/64 (32%), Positives = 28/64 (43%)
 Frame = -1

Query: 296 RTRLTSAA*SVR*TGIFSRKLLTAGPTSRPKRLIWRLDLTSPIVIAAPMSLTMMLSARET 117
           R RL S       +G F+R LL  G     + L W LD  S + +  P S   + +  E 
Sbjct: 533 RGRLESVTTDGGRSGFFNRSLLKEGEFCGEELLTWALDPKSGVNL--PSSTRTVKALTEV 590

Query: 116 EAVA 105
           EA A
Sbjct: 591 EAFA 594


>At5g57940.2 68418.m07249 cyclic nucleotide-regulated ion channel /
           cyclic nucleotide-gated channel (CNGC5) identical to
           cyclic nucleotide and calmodulin-regulated ion channel
           (cngc5) GI:4581205 from [Arabidopsis thaliana]
          Length = 717

 Score = 27.1 bits (57), Expect = 4.7
 Identities = 21/64 (32%), Positives = 28/64 (43%)
 Frame = -1

Query: 296 RTRLTSAA*SVR*TGIFSRKLLTAGPTSRPKRLIWRLDLTSPIVIAAPMSLTMMLSARET 117
           R RL S       +G F+R LL  G     + L W LD  S + +  P S   + +  E 
Sbjct: 540 RGRLESVTTDGGRSGFFNRSLLKEGEFCGEELLTWALDPKSGVNL--PSSTRTVKALTEV 597

Query: 116 EAVA 105
           EA A
Sbjct: 598 EAFA 601


>At5g57940.1 68418.m07248 cyclic nucleotide-regulated ion channel /
           cyclic nucleotide-gated channel (CNGC5) identical to
           cyclic nucleotide and calmodulin-regulated ion channel
           (cngc5) GI:4581205 from [Arabidopsis thaliana]
          Length = 717

 Score = 27.1 bits (57), Expect = 4.7
 Identities = 21/64 (32%), Positives = 28/64 (43%)
 Frame = -1

Query: 296 RTRLTSAA*SVR*TGIFSRKLLTAGPTSRPKRLIWRLDLTSPIVIAAPMSLTMMLSARET 117
           R RL S       +G F+R LL  G     + L W LD  S + +  P S   + +  E 
Sbjct: 540 RGRLESVTTDGGRSGFFNRSLLKEGEFCGEELLTWALDPKSGVNL--PSSTRTVKALTEV 597

Query: 116 EAVA 105
           EA A
Sbjct: 598 EAFA 601


>At4g09790.1 68417.m01608 F-box family protein hypothetical protein
           -Arabidopsis thaliana;PID:g2245079; contains Pfam
           PF00646: F-box domain; contains TIGRFAM TIGR01640: F-box
           protein interaction domain
          Length = 351

 Score = 26.6 bits (56), Expect = 6.2
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +3

Query: 300 VRRPTRHQQITVNYSNDTCESKI 368
           + RP R +Q+ V Y  DTC  +I
Sbjct: 207 MERPVREEQLAVLYQQDTCLMEI 229


>At3g20660.1 68416.m02615 organic cation transporter family protein
           similar to organic cation transporter OCT3 [Rattus
           norvegicus] GI:3273722, organic cation transporter 3
           [Mus musculus] GI:4454795; contains Pfam profile
           PF00083: major facilitator superfamily protein
          Length = 534

 Score = 26.6 bits (56), Expect = 6.2
 Identities = 9/31 (29%), Positives = 22/31 (70%)
 Frame = +1

Query: 115 SVSLADNIIVSDIGAAITIGDVKSNLQINLF 207
           SV+++  + +   G ++ +G++K+NL +N+F
Sbjct: 342 SVAISFTVSIVYYGLSLNVGNLKTNLYLNVF 372


>At5g53480.1 68418.m06646 importin beta-2, putative similar to
           importin-beta2 [Oryza sativa (japonica cultivar-group)]
           GI:3983665; contains Pfam profile PF03810: Importin-beta
           N-terminal domain
          Length = 870

 Score = 26.2 bits (55), Expect = 8.2
 Identities = 15/48 (31%), Positives = 22/48 (45%)
 Frame = -3

Query: 270 VRQVDRDLL*EVVDGWSNFASEEIDLEVRFDIANSYCSSDVTDNDVVC 127
           VR+ D  +  + ++ WS+   EEI      DI   Y      D+DV C
Sbjct: 269 VREDDESVALQAIEFWSSICDEEI------DILEEYGGEFAGDSDVPC 310


>At5g50115.1 68418.m06206 hypothetical protein temporary automated
           functional assignment
          Length = 485

 Score = 26.2 bits (55), Expect = 8.2
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = +3

Query: 18  FR*RRNPHFQPRPEVFRF 71
           FR R NP   PR E+FRF
Sbjct: 409 FRRRSNPRTYPRKELFRF 426


>At5g19920.1 68418.m02370 transducin family protein / WD-40 repeat
           family protein contains 5 WD-40 repeats (PF00400);
           related to TipD protein (SP:O15736, PIR:T08602)
           [Dictyostelium discoideum]; related to WD-repeat protein
           RBAP1 (GI:9716495) [Zea mays]
          Length = 656

 Score = 26.2 bits (55), Expect = 8.2
 Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = +3

Query: 195 NQSLRTRSWTSRQ-QLPREDPCLPDGLRSRGQPCSGVR 305
           N++ + +   +R   +PRED C P+  R R  P   VR
Sbjct: 156 NETTQAQPMATRDYNIPREDTCGPEAKRPRSIPDEVVR 193


>At1g75820.1 68414.m08807 CLAVATA1 receptor kinase (CLV1) identical
           to receptor kinase (CLV1) GB:AAB58929 GI:2160756
           [Arabidopsis thaliana]
          Length = 980

 Score = 26.2 bits (55), Expect = 8.2
 Identities = 15/66 (22%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
 Frame = +1

Query: 49  RVLRSFASGGLALENVVAEATASVSLADNIIVSDIGAAITIGDVKSNLQI--NLFGREVG 222
           R++++  +G +            + L DN    ++   ++ GDV   + +  N F  E+ 
Sbjct: 415 RIVKNLLNGTVPAGLFNLPLVTIIELTDNFFSGELPVTMS-GDVLDQIYLSNNWFSGEIP 473

Query: 223 PAVNNF 240
           PA+ NF
Sbjct: 474 PAIGNF 479


>At1g48120.1 68414.m05370 calcineurin-like phosphoesterase family
            protein contains Pfam profile: PF00149 calcineurin-like
            phosphoesterase
          Length = 1338

 Score = 26.2 bits (55), Expect = 8.2
 Identities = 12/48 (25%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
 Frame = -3

Query: 234  VDGWSNFASEEIDLEVRFDIANSYCSSDVTDNDVV-CEGDGSGSLSND 94
            +D  S      ++LE+ +D       +++T ND   C  DG+  ++ D
Sbjct: 1148 IDDCSTTGDAAVELEITYDEKLDRVVTEITGNDAAECMTDGNRDIATD 1195


>At1g41900.1 68414.m04840 myosin heavy chain-related similar to
           Myosin heavy chain, skeletal muscle, extraocular
           (MyHC-eo) (SP:Q9UKX3)  {Homo sapiens}
          Length = 442

 Score = 26.2 bits (55), Expect = 8.2
 Identities = 18/55 (32%), Positives = 24/55 (43%)
 Frame = -1

Query: 224 GPTSRPKRLIWRLDLTSPIVIAAPMSLTMMLSARETEAVASATTFSRASPPEAKD 60
           G  S PKR   + ++ S   +A+P    M  +    EA ASA    RA P    D
Sbjct: 302 GAPSSPKRARTQPEVVSDQRVASPREERMEPATATPEAAASAIGDPRAGPMAEDD 356


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,555,587
Number of Sequences: 28952
Number of extensions: 143083
Number of successful extensions: 511
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 501
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 511
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 585758608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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