Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12b10r
         (732 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A10.12 |||HMG-box variant|Schizosaccharomyces pombe|chr 2|...    76   6e-15
SPAC57A10.09c |||High-mobility group non-histone chromatin prote...    33   0.056
SPAC10F6.08c |||HMG box protein|Schizosaccharomyces pombe|chr 1|...    30   0.39 
SPCC10H11.02 |cwf23|SPCP31B10.01|DNAJ domain protein Cwf23|Schiz...    28   1.6  
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    27   3.6  
SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces pomb...    25   8.4  

>SPBC29A10.12 |||HMG-box variant|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 207

 Score = 75.8 bits (178), Expect = 6e-15
 Identities = 43/114 (37%), Positives = 63/114 (55%), Gaps = 7/114 (6%)
 Frame = -3

Query: 451 KEKMAK-PETAKPVPSKVVIEEPPLEENLNRI-QLDGELAQTVDEALAILS-----DKPE 293
           KE+M   P        K   +   L+  LN   Q     A+ +D+AL +LS      K +
Sbjct: 65  KEEMESLPSKGGKGSKKAAKKNSSLDAFLNETPQTASYSARNIDDALDLLSLNNSSSKDK 124

Query: 292 VDRHPEKRLKAAFTAFEQINLPRLKAENPSLRLSQLKELLKKEWHKSPQNPLNQ 131
           +DRHPE+R KAA T ++Q  LP L+ E P LRL+Q ++++ KE+ K P NP N+
Sbjct: 125 IDRHPERRFKAALTEYKQSRLPELRKEQPGLRLNQYEDIMYKEFQKHPDNPFNK 178


>SPAC57A10.09c |||High-mobility group non-histone chromatin
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 108

 Score = 32.7 bits (71), Expect = 0.056
 Identities = 16/43 (37%), Positives = 21/43 (48%)
 Frame = -3

Query: 289 DRHPEKRLKAAFTAFEQINLPRLKAENPSLRLSQLKELLKKEW 161
           D +  KR  +AF  F   N  ++K +NP     QL  LL K W
Sbjct: 12  DPNTPKRNMSAFMFFSIENREKMKTDNPDATFGQLGSLLGKRW 54


>SPAC10F6.08c |||HMG box protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 341

 Score = 29.9 bits (64), Expect = 0.39
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -3

Query: 256 FTAFEQINLPRLKAENPSLRLSQLKELLKKEWH 158
           F  F  I  P+LKAE  +L+   LK+ L+  W+
Sbjct: 202 FNHFSSIQKPKLKAEGSTLKGQALKKTLEDTWN 234


>SPCC10H11.02 |cwf23|SPCP31B10.01|DNAJ domain protein
           Cwf23|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 289

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 20/96 (20%), Positives = 43/96 (44%)
 Frame = -3

Query: 352 DGELAQTVDEALAILSDKPEVDRHPEKRLKAAFTAFEQINLPRLKAENPSLRLSQLKELL 173
           + E  +  ++  A+  +   + R  E RL+      EQ    R K E PS ++S+L   +
Sbjct: 113 ENERDRLQEKLRALQEESANLRRQRENRLRE-----EQEQSKRRKQETPSSKISELDRSI 167

Query: 172 KKEWHKSPQNPLNQRV*TNETVIKFIFTKMSVIRNV 65
           +  W +   + +      N+  ++ I++    ++NV
Sbjct: 168 RIRWKRKYADQV------NDAYLRSIYSSFGTLQNV 197


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -2

Query: 215 REPFAQAFSAQRTAKERMAQITTEPP 138
           R PF  A SAQ  A  R + ++T PP
Sbjct: 884 RSPFPGASSAQPAAMSRTSSVSTLPP 909


>SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 331

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
 Frame = -1

Query: 258 PSQPLNKSICHVLKPRTLRSGFLSSKNC*RKNGTNHHRT-PSIKGSELMRL 109
           P++P+ ++ CH   P +  +   +SKN    + TN ++  PSI  SE  R+
Sbjct: 142 PNEPVPETNCHKESPLSDETVSETSKNDTSNSPTNENQAQPSIAWSEGHRI 192


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,262,266
Number of Sequences: 5004
Number of extensions: 40354
Number of successful extensions: 157
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)