Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV12b10r
(732 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0791 + 28088237-28088809,28089311-28089430,28089585-280896... 83 3e-16
03_01_0226 + 1795120-1795686,1796040-1796171 72 4e-13
02_01_0055 + 410661-411380,411481-413733,414486-414875,414983-41... 31 1.2
05_01_0562 + 4907937-4907990,4908890-4909075,4909180-4909285,490... 30 1.6
08_02_0550 + 18509365-18509589,18509668-18510644,18510828-185118... 29 2.9
12_01_0206 + 1555278-1555448,1555710-1555772,1556236-1556307,155... 29 3.8
10_08_0583 - 18952168-18952263,18953663-18953740,18954006-189540... 29 3.8
07_03_0539 - 19237573-19239169,19239258-19239410,19239505-192395... 29 3.8
03_05_1091 + 30322035-30322739,30322861-30324043,30324114-303251... 29 3.8
03_02_0157 + 6008840-6008908,6009795-6009932,6010921-6011014,601... 29 3.8
12_01_1110 + 11756814-11757485,11757566-11757644,11757705-117579... 28 6.6
12_01_0136 + 1051853-1052245,1052352-1052807 28 6.6
11_01_0135 + 1129849-1130244,1131125-1131542,1131986-1132104 28 6.6
07_02_0028 + 11964941-11964991,11965259-11966101,11966249-119665... 28 6.6
04_04_0633 - 26771487-26771591,26771708-26771782,26771906-267719... 28 6.6
12_02_1152 + 26515422-26515460,26516317-26516454,26518647-265188... 28 8.8
10_08_1019 - 22299800-22299946,22300040-22300109,22300930-223010... 28 8.8
02_05_0104 - 25858414-25858509,25858711-25858782,25859081-258591... 28 8.8
>04_04_0791 +
28088237-28088809,28089311-28089430,28089585-28089662,
28089808-28089938,28090390-28090435,28090529-28090636
Length = 351
Score = 82.6 bits (195), Expect = 3e-16
Identities = 51/111 (45%), Positives = 67/111 (60%), Gaps = 9/111 (8%)
Frame = -3
Query: 436 KPETAKPVPSKVVIEEP----PLEENLNRIQLDGELAQTVDEALAILS--DKP---EVDR 284
+PE AK ++ EE L N NR E A++VDEA+A +S D D+
Sbjct: 122 EPEAAKKRAARTAEEEEYERVVLVANTNRDDSIIE-ARSVDEAIARMSLVDSEGALPADK 180
Query: 283 HPEKRLKAAFTAFEQINLPRLKAENPSLRLSQLKELLKKEWHKSPQNPLNQ 131
HPE+RLKA+F AFE+ LP+LK E P L L+Q K+++ K W KSP NPLNQ
Sbjct: 181 HPERRLKASFKAFEEAELPKLKEEKPGLTLNQYKDMIWKLWKKSPDNPLNQ 231
Score = 28.3 bits (60), Expect = 6.6
Identities = 11/32 (34%), Positives = 21/32 (65%)
Frame = -3
Query: 730 SKAVAARQRKENAKLEKDQKTKKAVEDAEWED 635
SKA AAR+R+ A+ ++ + ++A E+ W +
Sbjct: 9 SKAEAARERRSVAEADRRDRVERAKEEEYWRE 40
>03_01_0226 + 1795120-1795686,1796040-1796171
Length = 232
Score = 72.1 bits (169), Expect = 4e-13
Identities = 35/74 (47%), Positives = 49/74 (66%), Gaps = 4/74 (5%)
Frame = -3
Query: 340 AQTVDEALAILSDKPEV----DRHPEKRLKAAFTAFEQINLPRLKAENPSLRLSQLKELL 173
A++V++A+ +S E DRHPE+RLK ++ AFE+ L +LK E P L L Q K+++
Sbjct: 156 ARSVEDAIVKMSIAAEPALPPDRHPERRLKVSYKAFEEAELAKLKEEKPGLTLHQYKDMI 215
Query: 172 KKEWHKSPQNPLNQ 131
K W KSP NPLNQ
Sbjct: 216 WKLWKKSPDNPLNQ 229
Score = 28.3 bits (60), Expect = 6.6
Identities = 11/31 (35%), Positives = 21/31 (67%)
Frame = -3
Query: 730 SKAVAARQRKENAKLEKDQKTKKAVEDAEWE 638
+KA AAR+R+ A+ ++ + +A E+A W+
Sbjct: 9 TKAEAARERRSAAEADRRDRDARAKEEAYWQ 39
>02_01_0055 + 410661-411380,411481-413733,414486-414875,414983-418153
Length = 2177
Score = 30.7 bits (66), Expect = 1.2
Identities = 30/107 (28%), Positives = 51/107 (47%)
Frame = -3
Query: 451 KEKMAKPETAKPVPSKVVIEEPPLEENLNRIQLDGELAQTVDEALAILSDKPEVDRHPEK 272
K ++AK P+P K +EEP + N + L +++ E L++ SD + + +
Sbjct: 1069 KMELAKLLDRVPIPVKESLEEPSAKIN---VLLQAYISRLKLEGLSLSSDMVYIRQSAGR 1125
Query: 271 RLKAAFTAFEQINLPRLKAENPSLRLSQLKELLKKEWHKSPQNPLNQ 131
L+A F +I L R A+ L+ K + K+ W + Q PL Q
Sbjct: 1126 LLRALF----EIVLKRGWAQLAEKALNLCKMIDKQMW--NVQTPLRQ 1166
>05_01_0562 +
4907937-4907990,4908890-4909075,4909180-4909285,
4909377-4909513,4909989-4910072,4910157-4910248,
4910358-4910466,4910554-4910640,4910737-4910829,
4911384-4911581,4911659-4911810,4911910-4912060,
4912174-4912272,4912362-4912535,4912680-4912758,
4912858-4912979
Length = 640
Score = 30.3 bits (65), Expect = 1.6
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = -3
Query: 301 KPEVDRHPEKRLKAAFTAFEQINLPRLKAENPSLRLSQLKELLKKEWHK 155
K + D + KR A F F + LK NP L +++ + L + W K
Sbjct: 550 KKKKDPNAPKRAIAPFMYFSKAERANLKNSNPELATTEIAKKLGERWQK 598
>08_02_0550 +
18509365-18509589,18509668-18510644,18510828-18511802,
18511885-18512142,18512216-18512326,18512418-18512496,
18512595-18512687,18512773-18512958
Length = 967
Score = 29.5 bits (63), Expect = 2.9
Identities = 16/65 (24%), Positives = 35/65 (53%)
Frame = -3
Query: 466 QISQAKEKMAKPETAKPVPSKVVIEEPPLEENLNRIQLDGELAQTVDEALAILSDKPEVD 287
Q +Q ++ +PE A P+P + E+P L++ ++ + E+ Q ++ + ++ V+
Sbjct: 529 QSNQPEKHADEPELAHPMPEQPEPEQPMLDK--AELEREEEVVQEREKEVVQEREEEAVE 586
Query: 286 RHPEK 272
H EK
Sbjct: 587 EHKEK 591
>12_01_0206 +
1555278-1555448,1555710-1555772,1556236-1556307,
1556430-1556537,1556644-1556724,1556861-1556914,
1557020-1557145,1557228-1557317,1557603-1557725,
1557831-1557938,1558287-1558400,1558530-1558586,
1558667-1558741,1558915-1558989
Length = 438
Score = 29.1 bits (62), Expect = 3.8
Identities = 17/68 (25%), Positives = 32/68 (47%)
Frame = -3
Query: 433 PETAKPVPSKVVIEEPPLEENLNRIQLDGELAQTVDEALAILSDKPEVDRHPEKRLKAAF 254
P T +P ++E+ ++ R + D + T+D+ A+ +D E +K A
Sbjct: 253 PMTRVTIPE--ILEDEWFKKGYKRPEFDEKYDTTLDDVYAVFNDSEEHHVTEKKEEPEAL 310
Query: 253 TAFEQINL 230
AFE I++
Sbjct: 311 NAFELISM 318
>10_08_0583 -
18952168-18952263,18953663-18953740,18954006-18954081,
18954687-18954735,18955271-18955469,18955761-18955799,
18955800-18956123
Length = 286
Score = 29.1 bits (62), Expect = 3.8
Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Frame = -3
Query: 292 VDRHPEKRLK--AAFTAFEQINLPRLKAENPSLRLSQLKELLKKEWHKSP 149
++R PEKR + +A+ F + + R+KA NP + + K W P
Sbjct: 185 INRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFP 234
>07_03_0539 - 19237573-19239169,19239258-19239410,19239505-19239566,
19239855-19240103,19240248-19240337,19240453-19240632,
19240713-19240942,19241558-19241735,19242327-19242432,
19242786-19242883,19243683-19243813,19243908-19244087,
19244179-19244443,19244557-19244627,19244707-19244922,
19245147-19245294
Length = 1317
Score = 29.1 bits (62), Expect = 3.8
Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Frame = -3
Query: 391 EPPLEENLNRIQLDGELAQTVDEALAILS--DKPEVDRHPEKRLKAAFTAFEQINLP 227
E PL+ L ++ L GE + +DE L I+S P V P+ R + + A E+ +P
Sbjct: 1041 EFPLDPTLAKMLLMGEQLECLDEVLTIVSMLSVPSVFFRPKDRAEESDAAREKFFVP 1097
>03_05_1091 + 30322035-30322739,30322861-30324043,30324114-30325105,
30326409-30326798,30326896-30330060
Length = 2144
Score = 29.1 bits (62), Expect = 3.8
Identities = 29/107 (27%), Positives = 52/107 (48%)
Frame = -3
Query: 451 KEKMAKPETAKPVPSKVVIEEPPLEENLNRIQLDGELAQTVDEALAILSDKPEVDRHPEK 272
K ++AK P+P K ++EP + N + L +++ E L++ SD + ++ +
Sbjct: 1038 KMELAKLFNCVPIPVKESLDEPSAKIN---VLLQAYISRLELEGLSLSSDMVYIRQNAGR 1094
Query: 271 RLKAAFTAFEQINLPRLKAENPSLRLSQLKELLKKEWHKSPQNPLNQ 131
L+A F +I L R A+ L+ K + K W + Q PL+Q
Sbjct: 1095 LLRALF----EIVLKRGWAQLAEKALNLCKMIDKHIW--NVQIPLHQ 1135
>03_02_0157 +
6008840-6008908,6009795-6009932,6010921-6011014,
6011313-6011361,6015190-6015265,6015466-6015558,
6015786-6015851
Length = 194
Score = 29.1 bits (62), Expect = 3.8
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Frame = -3
Query: 298 PEVDRHPEK--RLKAAFTAFEQINLPRLKAENPSLRLSQLKELLKKEWHK 155
P V + PEK RL +A+ F + + R+KA P + + + K W K
Sbjct: 96 PFVVKPPEKKHRLPSAYNRFMREEIQRIKAAKPDIPHREAFSMAAKNWAK 145
>12_01_1110 +
11756814-11757485,11757566-11757644,11757705-11757991,
11758072-11758131,11758311-11758976
Length = 587
Score = 28.3 bits (60), Expect = 6.6
Identities = 18/55 (32%), Positives = 32/55 (58%)
Frame = -3
Query: 442 MAKPETAKPVPSKVVIEEPPLEENLNRIQLDGELAQTVDEALAILSDKPEVDRHP 278
+A + AK SK+ + P ++ ++ + + EL + VD+A A +SD PE D+ P
Sbjct: 275 LAPKKKAKKKKSKLADDLPAVDPSIEQALDEEELREDVDQAAAEMSD-PE-DKTP 327
>12_01_0136 + 1051853-1052245,1052352-1052807
Length = 282
Score = 28.3 bits (60), Expect = 6.6
Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 2/78 (2%)
Frame = -3
Query: 382 LEENLNRIQLDGE-LAQTVDEALAILSDKPEVDRHPEKRLKAAFTAFEQINLPRLKAENP 206
+E R + D E LA+ +DEA +L + + HPEK ++ A P +
Sbjct: 94 VEAGAARTRRDAEALARAMDEAGVVLLFRDKAYLHPEKVVELVRRAVPLALSPENDSRKE 153
Query: 205 SL-RLSQLKELLKKEWHK 155
L +L + KE + K HK
Sbjct: 154 ELKKLQEKKEEIDKLAHK 171
>11_01_0135 + 1129849-1130244,1131125-1131542,1131986-1132104
Length = 310
Score = 28.3 bits (60), Expect = 6.6
Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 2/78 (2%)
Frame = -3
Query: 382 LEENLNRIQLDGE-LAQTVDEALAILSDKPEVDRHPEKRLKAAFTAFEQINLPRLKAENP 206
+E R + D E LA+ +DEA +L + + HPEK ++ A P +
Sbjct: 95 VEAGAARTRRDAEALARAMDEAGVVLLFRDKAYLHPEKVVELVRRAVPLALSPENDSRKE 154
Query: 205 SL-RLSQLKELLKKEWHK 155
L +L + KE + K HK
Sbjct: 155 ELKKLQEKKEEIDKLAHK 172
>07_02_0028 +
11964941-11964991,11965259-11966101,11966249-11966560,
11966640-11967073,11967500-11967941
Length = 693
Score = 28.3 bits (60), Expect = 6.6
Identities = 23/102 (22%), Positives = 48/102 (47%), Gaps = 3/102 (2%)
Frame = -3
Query: 463 ISQAKEKMAKPETAKPVPSKVVIEEPPLEENLNRIQLDGELAQTVDEALAILSDKPEVDR 284
++ A +K AK + KP K + + P L+ + + + ++ + VD+A+A +SD
Sbjct: 471 LALAPKKKAKFKKTKPT-DKPIDDLPALDPTIEQALDEEDIGEDVDQAVAEMSDTERTPS 529
Query: 283 HPEKRLKAAFTA---FEQINLPRLKAENPSLRLSQLKELLKK 167
K+ +A ++ L + + S L+ L + +KK
Sbjct: 530 ASPKQTPPTPSAPFILQEDYLDEAEEDTSSKALAPLSDDVKK 571
>04_04_0633 -
26771487-26771591,26771708-26771782,26771906-26771981,
26772096-26772144,26772848-26773037,26773119-26773292,
26773415-26773543
Length = 265
Score = 28.3 bits (60), Expect = 6.6
Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
Frame = -3
Query: 298 PEVDRHPEKRLK--AAFTAFEQINLPRLKAENPSLRLSQLKELLKKEWHKSP 149
P +R EKR + +A+ F + + R+KA NP + + K W P
Sbjct: 160 PSANRTSEKRQRVPSAYNRFIKDEIQRIKASNPDITHREAFSAAAKNWAHFP 211
>12_02_1152 +
26515422-26515460,26516317-26516454,26518647-26518809,
26519165-26519213,26519315-26519390,26520348-26520473
Length = 196
Score = 27.9 bits (59), Expect = 8.8
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Frame = -3
Query: 286 RHPEKRLK--AAFTAFEQINLPRLKAENPSLRLSQLKELLKKEWHKSP 149
R PEKR + +A+ F + + R+KA NP + + K W P
Sbjct: 113 RPPEKRQRVPSAYNRFIKEEIRRIKANNPDISHREAFSTAAKNWAHYP 160
>10_08_1019 -
22299800-22299946,22300040-22300109,22300930-22301066,
22301142-22301195,22301638-22301694,22301814-22301846,
22301942-22302067,22302162-22302815,22303042-22303166,
22303770-22303935
Length = 522
Score = 27.9 bits (59), Expect = 8.8
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = -3
Query: 382 LEENLNRIQLDGELAQTVDEALAILSDKPEVDRH 281
+EE R +L GE+A+ +D + I S E RH
Sbjct: 358 IEEQTKRFELKGEIAKHIDIRVKISSHHVEAVRH 391
>02_05_0104 -
25858414-25858509,25858711-25858782,25859081-25859156,
25859286-25859334,25859826-25860012,25860164-25860340,
25860519-25860632
Length = 256
Score = 27.9 bits (59), Expect = 8.8
Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Frame = -3
Query: 289 DRHPEKRLK--AAFTAFEQINLPRLKAENPSLRLSQLKELLKKEWHKSP 149
+R PEKR + +A+ F + + R+KA NP + + K W P
Sbjct: 158 NRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFP 206
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,298,881
Number of Sequences: 37544
Number of extensions: 238880
Number of successful extensions: 699
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 683
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 699
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1921741964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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