BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fmgV12b10r (732 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_3834| Best HMM Match : DUF1014 (HMM E-Value=2.4e-18) 114 8e-26 SB_3809| Best HMM Match : DUF1014 (HMM E-Value=8.7e-09) 46 2e-05 SB_29734| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.18 SB_43027| Best HMM Match : U79_P34 (HMM E-Value=0.066) 33 0.24 SB_25642| Best HMM Match : HMG_box (HMM E-Value=1.3e-29) 32 0.55 SB_10678| Best HMM Match : HMG_box (HMM E-Value=1.3e-29) 32 0.55 SB_23680| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.73 SB_41131| Best HMM Match : HMG_box (HMM E-Value=4.1e-28) 30 2.2 SB_36412| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.2 SB_43647| Best HMM Match : VPS9 (HMM E-Value=1.1e-12) 28 6.8 SB_54551| Best HMM Match : DUF1515 (HMM E-Value=2.5) 28 9.0 SB_4162| Best HMM Match : GMAP (HMM E-Value=3) 28 9.0 SB_1832| Best HMM Match : HMG_box (HMM E-Value=1.7e-22) 28 9.0 >SB_3834| Best HMM Match : DUF1014 (HMM E-Value=2.4e-18) Length = 170 Score = 114 bits (274), Expect = 8e-26 Identities = 58/120 (48%), Positives = 88/120 (73%), Gaps = 7/120 (5%) Frame = -3 Query: 472 RAQISQAKEKMA-KPETAKPVPSKVVIEEPPLEENLNR-----IQLDGEL-AQTVDEALA 314 RAQI++ + K+A + E + + I + PLEEN N+ ++ +G + A++V+EA+A Sbjct: 41 RAQITEHQAKLAAEQEKLQKQKQQETIHDEPLEENPNQKMAELLEAEGAVEARSVEEAIA 100 Query: 313 ILSDKPEVDRHPEKRLKAAFTAFEQINLPRLKAENPSLRLSQLKELLKKEWHKSPQNPLN 134 LS + ++++HPEKRLKAA+ FE+ LPRLK ENP+LRLSQLK++L+K+W KSP+NPLN Sbjct: 101 TLSVEQKIEKHPEKRLKAAYAEFEERELPRLKQENPNLRLSQLKQMLRKDWMKSPENPLN 160 >SB_3809| Best HMM Match : DUF1014 (HMM E-Value=8.7e-09) Length = 265 Score = 46.4 bits (105), Expect = 2e-05 Identities = 27/76 (35%), Positives = 50/76 (65%), Gaps = 7/76 (9%) Frame = -3 Query: 472 RAQISQAKEKMA-KPETAKPVPSKVVIEEPPLEENLNR-----IQLDGEL-AQTVDEALA 314 RAQI++ + K+A + E + + I + PLEEN N+ ++ +G + A++V+EA+A Sbjct: 110 RAQITEHQAKLAAEQEKLQKQKQQETIHDEPLEENPNQKMAELLEAEGAVEARSVEEAIA 169 Query: 313 ILSDKPEVDRHPEKRL 266 LS + ++++HPEKR+ Sbjct: 170 TLSVEQKIEKHPEKRV 185 >SB_29734| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 304 Score = 33.5 bits (73), Expect = 0.18 Identities = 18/65 (27%), Positives = 29/65 (44%) Frame = -3 Query: 355 LDGELAQTVDEALAILSDKPEVDRHPEKRLKAAFTAFEQINLPRLKAENPSLRLSQLKEL 176 L G + VD A K + D KR AF + QI ++ E+P + +++ + Sbjct: 19 LSGGMDDQVDATQATHESKKKSDMQHVKRPMNAFMVWSQIERRKMAEEHPDMHNAEISKR 78 Query: 175 LKKEW 161 L K W Sbjct: 79 LGKRW 83 >SB_43027| Best HMM Match : U79_P34 (HMM E-Value=0.066) Length = 443 Score = 33.1 bits (72), Expect = 0.24 Identities = 13/36 (36%), Positives = 26/36 (72%) Frame = -3 Query: 466 QISQAKEKMAKPETAKPVPSKVVIEEPPLEENLNRI 359 Q++Q+++ MA+P +A+P P K+ ++ LE+ + RI Sbjct: 352 QVAQSRQ-MARPSSARPAPPKIKKQQDELEDQVGRI 386 >SB_25642| Best HMM Match : HMG_box (HMM E-Value=1.3e-29) Length = 267 Score = 31.9 bits (69), Expect = 0.55 Identities = 16/40 (40%), Positives = 21/40 (52%) Frame = -3 Query: 274 KRLKAAFTAFEQINLPRLKAENPSLRLSQLKELLKKEWHK 155 KR AF + +L AENP L SQ+ ++L EW K Sbjct: 8 KRPMNAFMIWSSKKRRQLAAENPKLHNSQISKMLGTEWRK 47 >SB_10678| Best HMM Match : HMG_box (HMM E-Value=1.3e-29) Length = 494 Score = 31.9 bits (69), Expect = 0.55 Identities = 16/40 (40%), Positives = 21/40 (52%) Frame = -3 Query: 274 KRLKAAFTAFEQINLPRLKAENPSLRLSQLKELLKKEWHK 155 KR AF + +L AENP L SQ+ ++L EW K Sbjct: 8 KRPMNAFMIWSSKKRRQLAAENPKLHNSQISKMLGTEWRK 47 >SB_23680| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 548 Score = 31.5 bits (68), Expect = 0.73 Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 2/58 (3%) Frame = -3 Query: 328 DEALAILSDKPEVDRHPEK--RLKAAFTAFEQINLPRLKAENPSLRLSQLKELLKKEW 161 D+ +S +D P+K R AF F Q ++K ENP L+ +++++ L +W Sbjct: 287 DKLARCISTSSALDAAPKKHKRPTPAFFRFRQDYADKVKEENPHLKDAEIRKHLSDQW 344 >SB_41131| Best HMM Match : HMG_box (HMM E-Value=4.1e-28) Length = 245 Score = 29.9 bits (64), Expect = 2.2 Identities = 12/44 (27%), Positives = 24/44 (54%) Frame = -3 Query: 274 KRLKAAFTAFEQINLPRLKAENPSLRLSQLKELLKKEWHKSPQN 143 KR +F + + + ENP +R +++ ++L EW K P++ Sbjct: 11 KRPLNSFMVWAKEKRRAMNRENPKMRNAEISKILGDEWRKMPES 54 >SB_36412| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 372 Score = 29.9 bits (64), Expect = 2.2 Identities = 12/35 (34%), Positives = 19/35 (54%) Frame = +2 Query: 29 NTNTDMMFYEQSYISYY*HLSENEFNNSLISSDPL 133 NTN DM+ Q + Y HL E +++ + + D L Sbjct: 280 NTNEDMLHILQQFHGYLPHLDEGQYDPQIFAGDQL 314 >SB_43647| Best HMM Match : VPS9 (HMM E-Value=1.1e-12) Length = 849 Score = 28.3 bits (60), Expect = 6.8 Identities = 11/43 (25%), Positives = 24/43 (55%) Frame = +1 Query: 523 PIPFQAVPLLQLSFVIDLNVFFLALPFSVVSS*VYHHYLPILH 651 P +Q V +V+D + + ALP+ + + + HH +P+++ Sbjct: 286 PDRYQEVVGGMCQYVVDKHSSYGALPYDAIYAKIEHHLIPVIY 328 >SB_54551| Best HMM Match : DUF1515 (HMM E-Value=2.5) Length = 260 Score = 27.9 bits (59), Expect = 9.0 Identities = 24/99 (24%), Positives = 47/99 (47%), Gaps = 4/99 (4%) Frame = -3 Query: 451 KEKMAKPETAKPVPSKVVIEEPPLEENLNRIQ-LDGELA---QTVDEALAILSDKPEVDR 284 ++ +AK + K V + ++EN R+Q L G +A +T+D+A + S + E Sbjct: 131 RQDVAKLKGFKMAMGSVAEIDAIIQENTERVQELQGVVATDRETIDDANSSESSRQEARE 190 Query: 283 HPEKRLKAAFTAFEQINLPRLKAENPSLRLSQLKELLKK 167 E+RL + +++ + EN ++K + KK Sbjct: 191 RNEERL----SEIDELERENRELENQKPLRERVKAIFKK 225 >SB_4162| Best HMM Match : GMAP (HMM E-Value=3) Length = 219 Score = 27.9 bits (59), Expect = 9.0 Identities = 24/91 (26%), Positives = 44/91 (48%), Gaps = 2/91 (2%) Frame = -3 Query: 454 AKEKM-AKPETAKPVPSKVVIEEPPLEENLNRIQLDGELAQTVDEA-LAILSDKPEVDRH 281 AKE++ A A VP+ +V E E L R + L+ TV E+ + ++SD PE+ + Sbjct: 65 AKEEVDAAAGAAGGVPATIVDGEGDDEAFLTRQR---SLSSTVGESGIEVISDDPEIQKE 121 Query: 280 PEKRLKAAFTAFEQINLPRLKAENPSLRLSQ 188 + + +L R++++ RL + Sbjct: 122 IKNEDDVVWAHIRAASLKRMQSQTSFKRLKK 152 >SB_1832| Best HMM Match : HMG_box (HMM E-Value=1.7e-22) Length = 299 Score = 27.9 bits (59), Expect = 9.0 Identities = 14/49 (28%), Positives = 26/49 (53%) Frame = -3 Query: 301 KPEVDRHPEKRLKAAFTAFEQINLPRLKAENPSLRLSQLKELLKKEWHK 155 KP VD + K ++ + Q + +L + P+L+ ++L L K+W K Sbjct: 144 KPFVDPNQPKMPLTSYFRYCQKHRAKLAKKYPNLKSTELAAKLSKKWRK 192 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 16,616,676 Number of Sequences: 59808 Number of extensions: 293496 Number of successful extensions: 1170 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 1086 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1165 length of database: 16,821,457 effective HSP length: 80 effective length of database: 12,036,817 effective search space used: 1962001171 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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