Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12b10r
         (732 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3834| Best HMM Match : DUF1014 (HMM E-Value=2.4e-18)               114   8e-26
SB_3809| Best HMM Match : DUF1014 (HMM E-Value=8.7e-09)                46   2e-05
SB_29734| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.18 
SB_43027| Best HMM Match : U79_P34 (HMM E-Value=0.066)                 33   0.24 
SB_25642| Best HMM Match : HMG_box (HMM E-Value=1.3e-29)               32   0.55 
SB_10678| Best HMM Match : HMG_box (HMM E-Value=1.3e-29)               32   0.55 
SB_23680| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.73 
SB_41131| Best HMM Match : HMG_box (HMM E-Value=4.1e-28)               30   2.2  
SB_36412| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.2  
SB_43647| Best HMM Match : VPS9 (HMM E-Value=1.1e-12)                  28   6.8  
SB_54551| Best HMM Match : DUF1515 (HMM E-Value=2.5)                   28   9.0  
SB_4162| Best HMM Match : GMAP (HMM E-Value=3)                         28   9.0  
SB_1832| Best HMM Match : HMG_box (HMM E-Value=1.7e-22)                28   9.0  

>SB_3834| Best HMM Match : DUF1014 (HMM E-Value=2.4e-18)
          Length = 170

 Score =  114 bits (274), Expect = 8e-26
 Identities = 58/120 (48%), Positives = 88/120 (73%), Gaps = 7/120 (5%)
 Frame = -3

Query: 472 RAQISQAKEKMA-KPETAKPVPSKVVIEEPPLEENLNR-----IQLDGEL-AQTVDEALA 314
           RAQI++ + K+A + E  +    +  I + PLEEN N+     ++ +G + A++V+EA+A
Sbjct: 41  RAQITEHQAKLAAEQEKLQKQKQQETIHDEPLEENPNQKMAELLEAEGAVEARSVEEAIA 100

Query: 313 ILSDKPEVDRHPEKRLKAAFTAFEQINLPRLKAENPSLRLSQLKELLKKEWHKSPQNPLN 134
            LS + ++++HPEKRLKAA+  FE+  LPRLK ENP+LRLSQLK++L+K+W KSP+NPLN
Sbjct: 101 TLSVEQKIEKHPEKRLKAAYAEFEERELPRLKQENPNLRLSQLKQMLRKDWMKSPENPLN 160


>SB_3809| Best HMM Match : DUF1014 (HMM E-Value=8.7e-09)
          Length = 265

 Score = 46.4 bits (105), Expect = 2e-05
 Identities = 27/76 (35%), Positives = 50/76 (65%), Gaps = 7/76 (9%)
 Frame = -3

Query: 472 RAQISQAKEKMA-KPETAKPVPSKVVIEEPPLEENLNR-----IQLDGEL-AQTVDEALA 314
           RAQI++ + K+A + E  +    +  I + PLEEN N+     ++ +G + A++V+EA+A
Sbjct: 110 RAQITEHQAKLAAEQEKLQKQKQQETIHDEPLEENPNQKMAELLEAEGAVEARSVEEAIA 169

Query: 313 ILSDKPEVDRHPEKRL 266
            LS + ++++HPEKR+
Sbjct: 170 TLSVEQKIEKHPEKRV 185


>SB_29734| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 304

 Score = 33.5 bits (73), Expect = 0.18
 Identities = 18/65 (27%), Positives = 29/65 (44%)
 Frame = -3

Query: 355 LDGELAQTVDEALAILSDKPEVDRHPEKRLKAAFTAFEQINLPRLKAENPSLRLSQLKEL 176
           L G +   VD   A    K + D    KR   AF  + QI   ++  E+P +  +++ + 
Sbjct: 19  LSGGMDDQVDATQATHESKKKSDMQHVKRPMNAFMVWSQIERRKMAEEHPDMHNAEISKR 78

Query: 175 LKKEW 161
           L K W
Sbjct: 79  LGKRW 83


>SB_43027| Best HMM Match : U79_P34 (HMM E-Value=0.066)
          Length = 443

 Score = 33.1 bits (72), Expect = 0.24
 Identities = 13/36 (36%), Positives = 26/36 (72%)
 Frame = -3

Query: 466 QISQAKEKMAKPETAKPVPSKVVIEEPPLEENLNRI 359
           Q++Q+++ MA+P +A+P P K+  ++  LE+ + RI
Sbjct: 352 QVAQSRQ-MARPSSARPAPPKIKKQQDELEDQVGRI 386


>SB_25642| Best HMM Match : HMG_box (HMM E-Value=1.3e-29)
          Length = 267

 Score = 31.9 bits (69), Expect = 0.55
 Identities = 16/40 (40%), Positives = 21/40 (52%)
 Frame = -3

Query: 274 KRLKAAFTAFEQINLPRLKAENPSLRLSQLKELLKKEWHK 155
           KR   AF  +      +L AENP L  SQ+ ++L  EW K
Sbjct: 8   KRPMNAFMIWSSKKRRQLAAENPKLHNSQISKMLGTEWRK 47


>SB_10678| Best HMM Match : HMG_box (HMM E-Value=1.3e-29)
          Length = 494

 Score = 31.9 bits (69), Expect = 0.55
 Identities = 16/40 (40%), Positives = 21/40 (52%)
 Frame = -3

Query: 274 KRLKAAFTAFEQINLPRLKAENPSLRLSQLKELLKKEWHK 155
           KR   AF  +      +L AENP L  SQ+ ++L  EW K
Sbjct: 8   KRPMNAFMIWSSKKRRQLAAENPKLHNSQISKMLGTEWRK 47


>SB_23680| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 548

 Score = 31.5 bits (68), Expect = 0.73
 Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
 Frame = -3

Query: 328 DEALAILSDKPEVDRHPEK--RLKAAFTAFEQINLPRLKAENPSLRLSQLKELLKKEW 161
           D+    +S    +D  P+K  R   AF  F Q    ++K ENP L+ +++++ L  +W
Sbjct: 287 DKLARCISTSSALDAAPKKHKRPTPAFFRFRQDYADKVKEENPHLKDAEIRKHLSDQW 344


>SB_41131| Best HMM Match : HMG_box (HMM E-Value=4.1e-28)
          Length = 245

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 12/44 (27%), Positives = 24/44 (54%)
 Frame = -3

Query: 274 KRLKAAFTAFEQINLPRLKAENPSLRLSQLKELLKKEWHKSPQN 143
           KR   +F  + +     +  ENP +R +++ ++L  EW K P++
Sbjct: 11  KRPLNSFMVWAKEKRRAMNRENPKMRNAEISKILGDEWRKMPES 54


>SB_36412| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 372

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +2

Query: 29  NTNTDMMFYEQSYISYY*HLSENEFNNSLISSDPL 133
           NTN DM+   Q +  Y  HL E +++  + + D L
Sbjct: 280 NTNEDMLHILQQFHGYLPHLDEGQYDPQIFAGDQL 314


>SB_43647| Best HMM Match : VPS9 (HMM E-Value=1.1e-12)
          Length = 849

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 11/43 (25%), Positives = 24/43 (55%)
 Frame = +1

Query: 523 PIPFQAVPLLQLSFVIDLNVFFLALPFSVVSS*VYHHYLPILH 651
           P  +Q V      +V+D +  + ALP+  + + + HH +P+++
Sbjct: 286 PDRYQEVVGGMCQYVVDKHSSYGALPYDAIYAKIEHHLIPVIY 328


>SB_54551| Best HMM Match : DUF1515 (HMM E-Value=2.5)
          Length = 260

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 24/99 (24%), Positives = 47/99 (47%), Gaps = 4/99 (4%)
 Frame = -3

Query: 451 KEKMAKPETAKPVPSKVVIEEPPLEENLNRIQ-LDGELA---QTVDEALAILSDKPEVDR 284
           ++ +AK +  K     V   +  ++EN  R+Q L G +A   +T+D+A +  S + E   
Sbjct: 131 RQDVAKLKGFKMAMGSVAEIDAIIQENTERVQELQGVVATDRETIDDANSSESSRQEARE 190

Query: 283 HPEKRLKAAFTAFEQINLPRLKAENPSLRLSQLKELLKK 167
             E+RL    +  +++     + EN      ++K + KK
Sbjct: 191 RNEERL----SEIDELERENRELENQKPLRERVKAIFKK 225


>SB_4162| Best HMM Match : GMAP (HMM E-Value=3)
          Length = 219

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 24/91 (26%), Positives = 44/91 (48%), Gaps = 2/91 (2%)
 Frame = -3

Query: 454 AKEKM-AKPETAKPVPSKVVIEEPPLEENLNRIQLDGELAQTVDEA-LAILSDKPEVDRH 281
           AKE++ A    A  VP+ +V  E   E  L R +    L+ TV E+ + ++SD PE+ + 
Sbjct: 65  AKEEVDAAAGAAGGVPATIVDGEGDDEAFLTRQR---SLSSTVGESGIEVISDDPEIQKE 121

Query: 280 PEKRLKAAFTAFEQINLPRLKAENPSLRLSQ 188
            +      +      +L R++++    RL +
Sbjct: 122 IKNEDDVVWAHIRAASLKRMQSQTSFKRLKK 152


>SB_1832| Best HMM Match : HMG_box (HMM E-Value=1.7e-22)
          Length = 299

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 14/49 (28%), Positives = 26/49 (53%)
 Frame = -3

Query: 301 KPEVDRHPEKRLKAAFTAFEQINLPRLKAENPSLRLSQLKELLKKEWHK 155
           KP VD +  K    ++  + Q +  +L  + P+L+ ++L   L K+W K
Sbjct: 144 KPFVDPNQPKMPLTSYFRYCQKHRAKLAKKYPNLKSTELAAKLSKKWRK 192


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,616,676
Number of Sequences: 59808
Number of extensions: 293496
Number of successful extensions: 1170
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1086
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1165
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1962001171
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)