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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12b10r
         (732 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC025727-8|AAG23390.2|  223|Caenorhabditis elegans Hypothetical ...   117   1e-26
AC025727-9|ABD63208.1|  146|Caenorhabditis elegans Hypothetical ...   106   2e-23
U22831-3|AAK67237.1|  234|Caenorhabditis elegans Hmg protein 1.2...    35   0.052
U22831-1|AAK20071.1|  235|Caenorhabditis elegans Hmg protein 1.2...    35   0.052
AF056577-1|AAC78599.1|  235|Caenorhabditis elegans high mobility...    35   0.052
U22831-2|AAK67238.1|  233|Caenorhabditis elegans Hmg protein 1.2...    34   0.090
U39853-8|AAQ81277.1| 1609|Caenorhabditis elegans Hypothetical pr...    29   4.5  
U39853-7|AAM54194.1| 1614|Caenorhabditis elegans Hypothetical pr...    29   4.5  
U39853-6|AAM54193.2| 1632|Caenorhabditis elegans Hypothetical pr...    29   4.5  
Z70203-2|CAA94105.1|  685|Caenorhabditis elegans Hypothetical pr...    28   5.9  
AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 prote...    28   5.9  
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote...    28   5.9  
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote...    28   5.9  
Z77657-6|CAB01150.2|  607|Caenorhabditis elegans Hypothetical pr...    28   7.8  
AL132952-19|CAB63382.2| 1677|Caenorhabditis elegans Hypothetical...    28   7.8  

>AC025727-8|AAG23390.2|  223|Caenorhabditis elegans Hypothetical
           protein Y73E7A.1a protein.
          Length = 223

 Score =  117 bits (281), Expect = 1e-26
 Identities = 72/208 (34%), Positives = 100/208 (48%), Gaps = 7/208 (3%)
 Frame = -3

Query: 727 KAVAARQRKENAKLEKDQKTKKAVEDAEWEDNXXXXXXXXXXXXXXXXXXXXXXXXXXXX 548
           K  AAR RK  AK ++  K  KA EDA+W DN                            
Sbjct: 11  KVTAARDRKATAKKDEADKKAKATEDAKWVDNDKLNNRKMQRKEDDEKKREEALRRKEEN 70

Query: 547 XXXXXXXXEXXXXXXXXXXXXXXXTRAQISQAKEKMAK-----PETAKPVPSKVVIEEPP 383
                                   TRA I   KE   +      E  K    K+ +    
Sbjct: 71  RKLAEEEMSSLGNKKPAGAATQKVTRAHIHIRKEDEERINRELEEKRKQEAQKIEVAGDL 130

Query: 382 LEENLNRIQLDGELAQTVDEALAILSDKPEVD--RHPEKRLKAAFTAFEQINLPRLKAEN 209
           L ENLN+++++   A+ VD+AL +L ++  +D  +HPEKR++AA+ AFE+  LP LK  +
Sbjct: 131 LVENLNKLEVEEGEARNVDDALKVLGEEKALDDDKHPEKRMRAAYLAFEEARLPELKLNH 190

Query: 208 PSLRLSQLKELLKKEWHKSPQNPLNQRV 125
           P+ RLSQLK++LKKEW KSP+NPLN R+
Sbjct: 191 PTFRLSQLKQILKKEWQKSPENPLNARL 218


>AC025727-9|ABD63208.1|  146|Caenorhabditis elegans Hypothetical
           protein Y73E7A.1b protein.
          Length = 146

 Score =  106 bits (254), Expect = 2e-23
 Identities = 49/104 (47%), Positives = 73/104 (70%), Gaps = 2/104 (1%)
 Frame = -3

Query: 430 ETAKPVPSKVVIEEPPLEENLNRIQLDGELAQTVDEALAILSDKPEVD--RHPEKRLKAA 257
           E  K    K+ +    L ENLN+++++   A+ VD+AL +L ++  +D  +HPEKR++AA
Sbjct: 38  EKRKQEAQKIEVAGDLLVENLNKLEVEEGEARNVDDALKVLGEEKALDDDKHPEKRMRAA 97

Query: 256 FTAFEQINLPRLKAENPSLRLSQLKELLKKEWHKSPQNPLNQRV 125
           + AFE+  LP LK  +P+ RLSQLK++LKKEW KSP+NPLN R+
Sbjct: 98  YLAFEEARLPELKLNHPTFRLSQLKQILKKEWQKSPENPLNARL 141


>U22831-3|AAK67237.1|  234|Caenorhabditis elegans Hmg protein 1.2,
           isoform b protein.
          Length = 234

 Score = 35.1 bits (77), Expect = 0.052
 Identities = 20/78 (25%), Positives = 36/78 (46%)
 Frame = -3

Query: 379 EENLNRIQLDGELAQTVDEALAILSDKPEVDRHPEKRLKAAFTAFEQINLPRLKAENPSL 200
           +++  R Q +  +A    E       + + D H  KR  +AF  + Q   P ++A +P  
Sbjct: 100 QKDAERYQAEVSVAAYGGEDAMRKRKRAKKDPHAPKRALSAFFFYSQDKRPEIQAGHPDW 159

Query: 199 RLSQLKELLKKEWHKSPQ 146
           ++ Q+ + L K W   PQ
Sbjct: 160 KVGQVAQELGKMWKLVPQ 177


>U22831-1|AAK20071.1|  235|Caenorhabditis elegans Hmg protein 1.2,
           isoform a protein.
          Length = 235

 Score = 35.1 bits (77), Expect = 0.052
 Identities = 20/78 (25%), Positives = 36/78 (46%)
 Frame = -3

Query: 379 EENLNRIQLDGELAQTVDEALAILSDKPEVDRHPEKRLKAAFTAFEQINLPRLKAENPSL 200
           +++  R Q +  +A    E       + + D H  KR  +AF  + Q   P ++A +P  
Sbjct: 101 QKDAERYQAEVSVAAYGGEDAMRKRKRAKKDPHAPKRALSAFFFYSQDKRPEIQAGHPDW 160

Query: 199 RLSQLKELLKKEWHKSPQ 146
           ++ Q+ + L K W   PQ
Sbjct: 161 KVGQVAQELGKMWKLVPQ 178


>AF056577-1|AAC78599.1|  235|Caenorhabditis elegans high mobility
           group protein 1.2 protein.
          Length = 235

 Score = 35.1 bits (77), Expect = 0.052
 Identities = 20/78 (25%), Positives = 36/78 (46%)
 Frame = -3

Query: 379 EENLNRIQLDGELAQTVDEALAILSDKPEVDRHPEKRLKAAFTAFEQINLPRLKAENPSL 200
           +++  R Q +  +A    E       + + D H  KR  +AF  + Q   P ++A +P  
Sbjct: 101 QKDAERYQAEVSVAAYGGEDAMRKRKRAKKDPHAPKRALSAFFFYSQDKRPEIQAGHPDW 160

Query: 199 RLSQLKELLKKEWHKSPQ 146
           ++ Q+ + L K W   PQ
Sbjct: 161 KVGQVAQELGKMWKLVPQ 178


>U22831-2|AAK67238.1|  233|Caenorhabditis elegans Hmg protein 1.2,
           isoform c protein.
          Length = 233

 Score = 34.3 bits (75), Expect = 0.090
 Identities = 16/48 (33%), Positives = 25/48 (52%)
 Frame = -3

Query: 289 DRHPEKRLKAAFTAFEQINLPRLKAENPSLRLSQLKELLKKEWHKSPQ 146
           D H  KR  +AF  + Q   P ++A +P  ++ Q+ + L K W   PQ
Sbjct: 129 DPHAPKRALSAFFFYSQDKRPEIQAGHPDWKVGQVAQELGKMWKLVPQ 176


>U39853-8|AAQ81277.1| 1609|Caenorhabditis elegans Hypothetical
           protein F13B9.1c protein.
          Length = 1609

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 19/50 (38%), Positives = 24/50 (48%)
 Frame = -3

Query: 421 KPVPSKVVIEEPPLEENLNRIQLDGELAQTVDEALAILSDKPEVDRHPEK 272
           K VPS  V E+P  EE+     L G  +Q   E     S +PE+  HP K
Sbjct: 307 KAVPSTAVSEKP--EESRESSSLGGSWSQQDTEPSERSSVEPEILEHPVK 354


>U39853-7|AAM54194.1| 1614|Caenorhabditis elegans Hypothetical
           protein F13B9.1b protein.
          Length = 1614

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 19/50 (38%), Positives = 24/50 (48%)
 Frame = -3

Query: 421 KPVPSKVVIEEPPLEENLNRIQLDGELAQTVDEALAILSDKPEVDRHPEK 272
           K VPS  V E+P  EE+     L G  +Q   E     S +PE+  HP K
Sbjct: 307 KAVPSTAVSEKP--EESRESSSLGGSWSQQDTEPSERSSVEPEILEHPVK 354


>U39853-6|AAM54193.2| 1632|Caenorhabditis elegans Hypothetical
           protein F13B9.1a protein.
          Length = 1632

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 19/50 (38%), Positives = 24/50 (48%)
 Frame = -3

Query: 421 KPVPSKVVIEEPPLEENLNRIQLDGELAQTVDEALAILSDKPEVDRHPEK 272
           K VPS  V E+P  EE+     L G  +Q   E     S +PE+  HP K
Sbjct: 307 KAVPSTAVSEKP--EESRESSSLGGSWSQQDTEPSERSSVEPEILEHPVK 354


>Z70203-2|CAA94105.1|  685|Caenorhabditis elegans Hypothetical
           protein C05G5.2 protein.
          Length = 685

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 13/44 (29%), Positives = 24/44 (54%)
 Frame = -3

Query: 463 ISQAKEKMAKPETAKPVPSKVVIEEPPLEENLNRIQLDGELAQT 332
           ++Q + + +  E AKP    +  +EPP E    +I L G+L ++
Sbjct: 584 VTQPEMEPSSSEPAKPAKPSITKKEPPSETMSAKISLIGDLQKS 627


>AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 protein
             protein.
          Length = 10578

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -3

Query: 730   SKAVAARQRKENAKLEKDQKTKKAVED 650
             S+  A +  ++ +KLE + KTKK +ED
Sbjct: 10044 SEIAAKKSAEQKSKLETEAKTKKVIED 10070


>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
             protein.
          Length = 18519

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -3

Query: 730   SKAVAARQRKENAKLEKDQKTKKAVED 650
             S+  A +  ++ +KLE + KTKK +ED
Sbjct: 10064 SEIAAKKSAEQKSKLETEAKTKKVIED 10090


>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
             protein.
          Length = 18534

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -3

Query: 730   SKAVAARQRKENAKLEKDQKTKKAVED 650
             S+  A +  ++ +KLE + KTKK +ED
Sbjct: 10064 SEIAAKKSAEQKSKLETEAKTKKVIED 10090


>Z77657-6|CAB01150.2|  607|Caenorhabditis elegans Hypothetical
           protein F08H9.1 protein.
          Length = 607

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 19/73 (26%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
 Frame = -3

Query: 412 PSKVVIEEPPLEE--NLNRIQLDGELAQTVDEALAILSDKPEVDRHPEKRLKAAFTAFEQ 239
           P+K + +E   +   +L  + L  +L  T+DE     S + E++      +   F   +Q
Sbjct: 237 PTKSIPQEEEFQPATHLKEMLLFRQLPITLDETERRRSMEEEMEEARNSGINTEFIPPQQ 296

Query: 238 INLPRLKAENPSL 200
           +++PRL +EN  L
Sbjct: 297 MDVPRLVSENMDL 309


>AL132952-19|CAB63382.2| 1677|Caenorhabditis elegans Hypothetical
            protein Y51H4A.12 protein.
          Length = 1677

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 17/65 (26%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
 Frame = -3

Query: 463  ISQAKEKMAK-PETAKPVPSKVVIEEPPLEENLNRIQLDGELAQTVDEALAILSDKPEVD 287
            + +A EK+ K P++ +  P+K   ++PPL++     ++DG   +  + +    S  PE  
Sbjct: 1471 VEKAVEKVEKKPKSPQKPPAKPTAQKPPLKKT---EEVDGIEREASESSSKESSVAPEEK 1527

Query: 286  RHPEK 272
            ++P+K
Sbjct: 1528 KNPKK 1532


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,477,240
Number of Sequences: 27780
Number of extensions: 219819
Number of successful extensions: 896
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 831
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 894
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1714401074
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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