BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fmgV12b10r (732 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AC025727-8|AAG23390.2| 223|Caenorhabditis elegans Hypothetical ... 117 1e-26 AC025727-9|ABD63208.1| 146|Caenorhabditis elegans Hypothetical ... 106 2e-23 U22831-3|AAK67237.1| 234|Caenorhabditis elegans Hmg protein 1.2... 35 0.052 U22831-1|AAK20071.1| 235|Caenorhabditis elegans Hmg protein 1.2... 35 0.052 AF056577-1|AAC78599.1| 235|Caenorhabditis elegans high mobility... 35 0.052 U22831-2|AAK67238.1| 233|Caenorhabditis elegans Hmg protein 1.2... 34 0.090 U39853-8|AAQ81277.1| 1609|Caenorhabditis elegans Hypothetical pr... 29 4.5 U39853-7|AAM54194.1| 1614|Caenorhabditis elegans Hypothetical pr... 29 4.5 U39853-6|AAM54193.2| 1632|Caenorhabditis elegans Hypothetical pr... 29 4.5 Z70203-2|CAA94105.1| 685|Caenorhabditis elegans Hypothetical pr... 28 5.9 AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 prote... 28 5.9 AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote... 28 5.9 AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote... 28 5.9 Z77657-6|CAB01150.2| 607|Caenorhabditis elegans Hypothetical pr... 28 7.8 AL132952-19|CAB63382.2| 1677|Caenorhabditis elegans Hypothetical... 28 7.8 >AC025727-8|AAG23390.2| 223|Caenorhabditis elegans Hypothetical protein Y73E7A.1a protein. Length = 223 Score = 117 bits (281), Expect = 1e-26 Identities = 72/208 (34%), Positives = 100/208 (48%), Gaps = 7/208 (3%) Frame = -3 Query: 727 KAVAARQRKENAKLEKDQKTKKAVEDAEWEDNXXXXXXXXXXXXXXXXXXXXXXXXXXXX 548 K AAR RK AK ++ K KA EDA+W DN Sbjct: 11 KVTAARDRKATAKKDEADKKAKATEDAKWVDNDKLNNRKMQRKEDDEKKREEALRRKEEN 70 Query: 547 XXXXXXXXEXXXXXXXXXXXXXXXTRAQISQAKEKMAK-----PETAKPVPSKVVIEEPP 383 TRA I KE + E K K+ + Sbjct: 71 RKLAEEEMSSLGNKKPAGAATQKVTRAHIHIRKEDEERINRELEEKRKQEAQKIEVAGDL 130 Query: 382 LEENLNRIQLDGELAQTVDEALAILSDKPEVD--RHPEKRLKAAFTAFEQINLPRLKAEN 209 L ENLN+++++ A+ VD+AL +L ++ +D +HPEKR++AA+ AFE+ LP LK + Sbjct: 131 LVENLNKLEVEEGEARNVDDALKVLGEEKALDDDKHPEKRMRAAYLAFEEARLPELKLNH 190 Query: 208 PSLRLSQLKELLKKEWHKSPQNPLNQRV 125 P+ RLSQLK++LKKEW KSP+NPLN R+ Sbjct: 191 PTFRLSQLKQILKKEWQKSPENPLNARL 218 >AC025727-9|ABD63208.1| 146|Caenorhabditis elegans Hypothetical protein Y73E7A.1b protein. Length = 146 Score = 106 bits (254), Expect = 2e-23 Identities = 49/104 (47%), Positives = 73/104 (70%), Gaps = 2/104 (1%) Frame = -3 Query: 430 ETAKPVPSKVVIEEPPLEENLNRIQLDGELAQTVDEALAILSDKPEVD--RHPEKRLKAA 257 E K K+ + L ENLN+++++ A+ VD+AL +L ++ +D +HPEKR++AA Sbjct: 38 EKRKQEAQKIEVAGDLLVENLNKLEVEEGEARNVDDALKVLGEEKALDDDKHPEKRMRAA 97 Query: 256 FTAFEQINLPRLKAENPSLRLSQLKELLKKEWHKSPQNPLNQRV 125 + AFE+ LP LK +P+ RLSQLK++LKKEW KSP+NPLN R+ Sbjct: 98 YLAFEEARLPELKLNHPTFRLSQLKQILKKEWQKSPENPLNARL 141 >U22831-3|AAK67237.1| 234|Caenorhabditis elegans Hmg protein 1.2, isoform b protein. Length = 234 Score = 35.1 bits (77), Expect = 0.052 Identities = 20/78 (25%), Positives = 36/78 (46%) Frame = -3 Query: 379 EENLNRIQLDGELAQTVDEALAILSDKPEVDRHPEKRLKAAFTAFEQINLPRLKAENPSL 200 +++ R Q + +A E + + D H KR +AF + Q P ++A +P Sbjct: 100 QKDAERYQAEVSVAAYGGEDAMRKRKRAKKDPHAPKRALSAFFFYSQDKRPEIQAGHPDW 159 Query: 199 RLSQLKELLKKEWHKSPQ 146 ++ Q+ + L K W PQ Sbjct: 160 KVGQVAQELGKMWKLVPQ 177 >U22831-1|AAK20071.1| 235|Caenorhabditis elegans Hmg protein 1.2, isoform a protein. Length = 235 Score = 35.1 bits (77), Expect = 0.052 Identities = 20/78 (25%), Positives = 36/78 (46%) Frame = -3 Query: 379 EENLNRIQLDGELAQTVDEALAILSDKPEVDRHPEKRLKAAFTAFEQINLPRLKAENPSL 200 +++ R Q + +A E + + D H KR +AF + Q P ++A +P Sbjct: 101 QKDAERYQAEVSVAAYGGEDAMRKRKRAKKDPHAPKRALSAFFFYSQDKRPEIQAGHPDW 160 Query: 199 RLSQLKELLKKEWHKSPQ 146 ++ Q+ + L K W PQ Sbjct: 161 KVGQVAQELGKMWKLVPQ 178 >AF056577-1|AAC78599.1| 235|Caenorhabditis elegans high mobility group protein 1.2 protein. Length = 235 Score = 35.1 bits (77), Expect = 0.052 Identities = 20/78 (25%), Positives = 36/78 (46%) Frame = -3 Query: 379 EENLNRIQLDGELAQTVDEALAILSDKPEVDRHPEKRLKAAFTAFEQINLPRLKAENPSL 200 +++ R Q + +A E + + D H KR +AF + Q P ++A +P Sbjct: 101 QKDAERYQAEVSVAAYGGEDAMRKRKRAKKDPHAPKRALSAFFFYSQDKRPEIQAGHPDW 160 Query: 199 RLSQLKELLKKEWHKSPQ 146 ++ Q+ + L K W PQ Sbjct: 161 KVGQVAQELGKMWKLVPQ 178 >U22831-2|AAK67238.1| 233|Caenorhabditis elegans Hmg protein 1.2, isoform c protein. Length = 233 Score = 34.3 bits (75), Expect = 0.090 Identities = 16/48 (33%), Positives = 25/48 (52%) Frame = -3 Query: 289 DRHPEKRLKAAFTAFEQINLPRLKAENPSLRLSQLKELLKKEWHKSPQ 146 D H KR +AF + Q P ++A +P ++ Q+ + L K W PQ Sbjct: 129 DPHAPKRALSAFFFYSQDKRPEIQAGHPDWKVGQVAQELGKMWKLVPQ 176 >U39853-8|AAQ81277.1| 1609|Caenorhabditis elegans Hypothetical protein F13B9.1c protein. Length = 1609 Score = 28.7 bits (61), Expect = 4.5 Identities = 19/50 (38%), Positives = 24/50 (48%) Frame = -3 Query: 421 KPVPSKVVIEEPPLEENLNRIQLDGELAQTVDEALAILSDKPEVDRHPEK 272 K VPS V E+P EE+ L G +Q E S +PE+ HP K Sbjct: 307 KAVPSTAVSEKP--EESRESSSLGGSWSQQDTEPSERSSVEPEILEHPVK 354 >U39853-7|AAM54194.1| 1614|Caenorhabditis elegans Hypothetical protein F13B9.1b protein. Length = 1614 Score = 28.7 bits (61), Expect = 4.5 Identities = 19/50 (38%), Positives = 24/50 (48%) Frame = -3 Query: 421 KPVPSKVVIEEPPLEENLNRIQLDGELAQTVDEALAILSDKPEVDRHPEK 272 K VPS V E+P EE+ L G +Q E S +PE+ HP K Sbjct: 307 KAVPSTAVSEKP--EESRESSSLGGSWSQQDTEPSERSSVEPEILEHPVK 354 >U39853-6|AAM54193.2| 1632|Caenorhabditis elegans Hypothetical protein F13B9.1a protein. Length = 1632 Score = 28.7 bits (61), Expect = 4.5 Identities = 19/50 (38%), Positives = 24/50 (48%) Frame = -3 Query: 421 KPVPSKVVIEEPPLEENLNRIQLDGELAQTVDEALAILSDKPEVDRHPEK 272 K VPS V E+P EE+ L G +Q E S +PE+ HP K Sbjct: 307 KAVPSTAVSEKP--EESRESSSLGGSWSQQDTEPSERSSVEPEILEHPVK 354 >Z70203-2|CAA94105.1| 685|Caenorhabditis elegans Hypothetical protein C05G5.2 protein. Length = 685 Score = 28.3 bits (60), Expect = 5.9 Identities = 13/44 (29%), Positives = 24/44 (54%) Frame = -3 Query: 463 ISQAKEKMAKPETAKPVPSKVVIEEPPLEENLNRIQLDGELAQT 332 ++Q + + + E AKP + +EPP E +I L G+L ++ Sbjct: 584 VTQPEMEPSSSEPAKPAKPSITKKEPPSETMSAKISLIGDLQKS 627 >AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 protein protein. Length = 10578 Score = 28.3 bits (60), Expect = 5.9 Identities = 11/27 (40%), Positives = 18/27 (66%) Frame = -3 Query: 730 SKAVAARQRKENAKLEKDQKTKKAVED 650 S+ A + ++ +KLE + KTKK +ED Sbjct: 10044 SEIAAKKSAEQKSKLETEAKTKKVIED 10070 >AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein protein. Length = 18519 Score = 28.3 bits (60), Expect = 5.9 Identities = 11/27 (40%), Positives = 18/27 (66%) Frame = -3 Query: 730 SKAVAARQRKENAKLEKDQKTKKAVED 650 S+ A + ++ +KLE + KTKK +ED Sbjct: 10064 SEIAAKKSAEQKSKLETEAKTKKVIED 10090 >AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein protein. Length = 18534 Score = 28.3 bits (60), Expect = 5.9 Identities = 11/27 (40%), Positives = 18/27 (66%) Frame = -3 Query: 730 SKAVAARQRKENAKLEKDQKTKKAVED 650 S+ A + ++ +KLE + KTKK +ED Sbjct: 10064 SEIAAKKSAEQKSKLETEAKTKKVIED 10090 >Z77657-6|CAB01150.2| 607|Caenorhabditis elegans Hypothetical protein F08H9.1 protein. Length = 607 Score = 27.9 bits (59), Expect = 7.8 Identities = 19/73 (26%), Positives = 36/73 (49%), Gaps = 2/73 (2%) Frame = -3 Query: 412 PSKVVIEEPPLEE--NLNRIQLDGELAQTVDEALAILSDKPEVDRHPEKRLKAAFTAFEQ 239 P+K + +E + +L + L +L T+DE S + E++ + F +Q Sbjct: 237 PTKSIPQEEEFQPATHLKEMLLFRQLPITLDETERRRSMEEEMEEARNSGINTEFIPPQQ 296 Query: 238 INLPRLKAENPSL 200 +++PRL +EN L Sbjct: 297 MDVPRLVSENMDL 309 >AL132952-19|CAB63382.2| 1677|Caenorhabditis elegans Hypothetical protein Y51H4A.12 protein. Length = 1677 Score = 27.9 bits (59), Expect = 7.8 Identities = 17/65 (26%), Positives = 36/65 (55%), Gaps = 1/65 (1%) Frame = -3 Query: 463 ISQAKEKMAK-PETAKPVPSKVVIEEPPLEENLNRIQLDGELAQTVDEALAILSDKPEVD 287 + +A EK+ K P++ + P+K ++PPL++ ++DG + + + S PE Sbjct: 1471 VEKAVEKVEKKPKSPQKPPAKPTAQKPPLKKT---EEVDGIEREASESSSKESSVAPEEK 1527 Query: 286 RHPEK 272 ++P+K Sbjct: 1528 KNPKK 1532 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 12,477,240 Number of Sequences: 27780 Number of extensions: 219819 Number of successful extensions: 896 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 831 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 894 length of database: 12,740,198 effective HSP length: 80 effective length of database: 10,517,798 effective search space used: 1714401074 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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