Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV12b10r
(732 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC025727-8|AAG23390.2| 223|Caenorhabditis elegans Hypothetical ... 117 1e-26
AC025727-9|ABD63208.1| 146|Caenorhabditis elegans Hypothetical ... 106 2e-23
U22831-3|AAK67237.1| 234|Caenorhabditis elegans Hmg protein 1.2... 35 0.052
U22831-1|AAK20071.1| 235|Caenorhabditis elegans Hmg protein 1.2... 35 0.052
AF056577-1|AAC78599.1| 235|Caenorhabditis elegans high mobility... 35 0.052
U22831-2|AAK67238.1| 233|Caenorhabditis elegans Hmg protein 1.2... 34 0.090
U39853-8|AAQ81277.1| 1609|Caenorhabditis elegans Hypothetical pr... 29 4.5
U39853-7|AAM54194.1| 1614|Caenorhabditis elegans Hypothetical pr... 29 4.5
U39853-6|AAM54193.2| 1632|Caenorhabditis elegans Hypothetical pr... 29 4.5
Z70203-2|CAA94105.1| 685|Caenorhabditis elegans Hypothetical pr... 28 5.9
AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 prote... 28 5.9
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote... 28 5.9
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote... 28 5.9
Z77657-6|CAB01150.2| 607|Caenorhabditis elegans Hypothetical pr... 28 7.8
AL132952-19|CAB63382.2| 1677|Caenorhabditis elegans Hypothetical... 28 7.8
>AC025727-8|AAG23390.2| 223|Caenorhabditis elegans Hypothetical
protein Y73E7A.1a protein.
Length = 223
Score = 117 bits (281), Expect = 1e-26
Identities = 72/208 (34%), Positives = 100/208 (48%), Gaps = 7/208 (3%)
Frame = -3
Query: 727 KAVAARQRKENAKLEKDQKTKKAVEDAEWEDNXXXXXXXXXXXXXXXXXXXXXXXXXXXX 548
K AAR RK AK ++ K KA EDA+W DN
Sbjct: 11 KVTAARDRKATAKKDEADKKAKATEDAKWVDNDKLNNRKMQRKEDDEKKREEALRRKEEN 70
Query: 547 XXXXXXXXEXXXXXXXXXXXXXXXTRAQISQAKEKMAK-----PETAKPVPSKVVIEEPP 383
TRA I KE + E K K+ +
Sbjct: 71 RKLAEEEMSSLGNKKPAGAATQKVTRAHIHIRKEDEERINRELEEKRKQEAQKIEVAGDL 130
Query: 382 LEENLNRIQLDGELAQTVDEALAILSDKPEVD--RHPEKRLKAAFTAFEQINLPRLKAEN 209
L ENLN+++++ A+ VD+AL +L ++ +D +HPEKR++AA+ AFE+ LP LK +
Sbjct: 131 LVENLNKLEVEEGEARNVDDALKVLGEEKALDDDKHPEKRMRAAYLAFEEARLPELKLNH 190
Query: 208 PSLRLSQLKELLKKEWHKSPQNPLNQRV 125
P+ RLSQLK++LKKEW KSP+NPLN R+
Sbjct: 191 PTFRLSQLKQILKKEWQKSPENPLNARL 218
>AC025727-9|ABD63208.1| 146|Caenorhabditis elegans Hypothetical
protein Y73E7A.1b protein.
Length = 146
Score = 106 bits (254), Expect = 2e-23
Identities = 49/104 (47%), Positives = 73/104 (70%), Gaps = 2/104 (1%)
Frame = -3
Query: 430 ETAKPVPSKVVIEEPPLEENLNRIQLDGELAQTVDEALAILSDKPEVD--RHPEKRLKAA 257
E K K+ + L ENLN+++++ A+ VD+AL +L ++ +D +HPEKR++AA
Sbjct: 38 EKRKQEAQKIEVAGDLLVENLNKLEVEEGEARNVDDALKVLGEEKALDDDKHPEKRMRAA 97
Query: 256 FTAFEQINLPRLKAENPSLRLSQLKELLKKEWHKSPQNPLNQRV 125
+ AFE+ LP LK +P+ RLSQLK++LKKEW KSP+NPLN R+
Sbjct: 98 YLAFEEARLPELKLNHPTFRLSQLKQILKKEWQKSPENPLNARL 141
>U22831-3|AAK67237.1| 234|Caenorhabditis elegans Hmg protein 1.2,
isoform b protein.
Length = 234
Score = 35.1 bits (77), Expect = 0.052
Identities = 20/78 (25%), Positives = 36/78 (46%)
Frame = -3
Query: 379 EENLNRIQLDGELAQTVDEALAILSDKPEVDRHPEKRLKAAFTAFEQINLPRLKAENPSL 200
+++ R Q + +A E + + D H KR +AF + Q P ++A +P
Sbjct: 100 QKDAERYQAEVSVAAYGGEDAMRKRKRAKKDPHAPKRALSAFFFYSQDKRPEIQAGHPDW 159
Query: 199 RLSQLKELLKKEWHKSPQ 146
++ Q+ + L K W PQ
Sbjct: 160 KVGQVAQELGKMWKLVPQ 177
>U22831-1|AAK20071.1| 235|Caenorhabditis elegans Hmg protein 1.2,
isoform a protein.
Length = 235
Score = 35.1 bits (77), Expect = 0.052
Identities = 20/78 (25%), Positives = 36/78 (46%)
Frame = -3
Query: 379 EENLNRIQLDGELAQTVDEALAILSDKPEVDRHPEKRLKAAFTAFEQINLPRLKAENPSL 200
+++ R Q + +A E + + D H KR +AF + Q P ++A +P
Sbjct: 101 QKDAERYQAEVSVAAYGGEDAMRKRKRAKKDPHAPKRALSAFFFYSQDKRPEIQAGHPDW 160
Query: 199 RLSQLKELLKKEWHKSPQ 146
++ Q+ + L K W PQ
Sbjct: 161 KVGQVAQELGKMWKLVPQ 178
>AF056577-1|AAC78599.1| 235|Caenorhabditis elegans high mobility
group protein 1.2 protein.
Length = 235
Score = 35.1 bits (77), Expect = 0.052
Identities = 20/78 (25%), Positives = 36/78 (46%)
Frame = -3
Query: 379 EENLNRIQLDGELAQTVDEALAILSDKPEVDRHPEKRLKAAFTAFEQINLPRLKAENPSL 200
+++ R Q + +A E + + D H KR +AF + Q P ++A +P
Sbjct: 101 QKDAERYQAEVSVAAYGGEDAMRKRKRAKKDPHAPKRALSAFFFYSQDKRPEIQAGHPDW 160
Query: 199 RLSQLKELLKKEWHKSPQ 146
++ Q+ + L K W PQ
Sbjct: 161 KVGQVAQELGKMWKLVPQ 178
>U22831-2|AAK67238.1| 233|Caenorhabditis elegans Hmg protein 1.2,
isoform c protein.
Length = 233
Score = 34.3 bits (75), Expect = 0.090
Identities = 16/48 (33%), Positives = 25/48 (52%)
Frame = -3
Query: 289 DRHPEKRLKAAFTAFEQINLPRLKAENPSLRLSQLKELLKKEWHKSPQ 146
D H KR +AF + Q P ++A +P ++ Q+ + L K W PQ
Sbjct: 129 DPHAPKRALSAFFFYSQDKRPEIQAGHPDWKVGQVAQELGKMWKLVPQ 176
>U39853-8|AAQ81277.1| 1609|Caenorhabditis elegans Hypothetical
protein F13B9.1c protein.
Length = 1609
Score = 28.7 bits (61), Expect = 4.5
Identities = 19/50 (38%), Positives = 24/50 (48%)
Frame = -3
Query: 421 KPVPSKVVIEEPPLEENLNRIQLDGELAQTVDEALAILSDKPEVDRHPEK 272
K VPS V E+P EE+ L G +Q E S +PE+ HP K
Sbjct: 307 KAVPSTAVSEKP--EESRESSSLGGSWSQQDTEPSERSSVEPEILEHPVK 354
>U39853-7|AAM54194.1| 1614|Caenorhabditis elegans Hypothetical
protein F13B9.1b protein.
Length = 1614
Score = 28.7 bits (61), Expect = 4.5
Identities = 19/50 (38%), Positives = 24/50 (48%)
Frame = -3
Query: 421 KPVPSKVVIEEPPLEENLNRIQLDGELAQTVDEALAILSDKPEVDRHPEK 272
K VPS V E+P EE+ L G +Q E S +PE+ HP K
Sbjct: 307 KAVPSTAVSEKP--EESRESSSLGGSWSQQDTEPSERSSVEPEILEHPVK 354
>U39853-6|AAM54193.2| 1632|Caenorhabditis elegans Hypothetical
protein F13B9.1a protein.
Length = 1632
Score = 28.7 bits (61), Expect = 4.5
Identities = 19/50 (38%), Positives = 24/50 (48%)
Frame = -3
Query: 421 KPVPSKVVIEEPPLEENLNRIQLDGELAQTVDEALAILSDKPEVDRHPEK 272
K VPS V E+P EE+ L G +Q E S +PE+ HP K
Sbjct: 307 KAVPSTAVSEKP--EESRESSSLGGSWSQQDTEPSERSSVEPEILEHPVK 354
>Z70203-2|CAA94105.1| 685|Caenorhabditis elegans Hypothetical
protein C05G5.2 protein.
Length = 685
Score = 28.3 bits (60), Expect = 5.9
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = -3
Query: 463 ISQAKEKMAKPETAKPVPSKVVIEEPPLEENLNRIQLDGELAQT 332
++Q + + + E AKP + +EPP E +I L G+L ++
Sbjct: 584 VTQPEMEPSSSEPAKPAKPSITKKEPPSETMSAKISLIGDLQKS 627
>AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 protein
protein.
Length = 10578
Score = 28.3 bits (60), Expect = 5.9
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = -3
Query: 730 SKAVAARQRKENAKLEKDQKTKKAVED 650
S+ A + ++ +KLE + KTKK +ED
Sbjct: 10044 SEIAAKKSAEQKSKLETEAKTKKVIED 10070
>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
protein.
Length = 18519
Score = 28.3 bits (60), Expect = 5.9
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = -3
Query: 730 SKAVAARQRKENAKLEKDQKTKKAVED 650
S+ A + ++ +KLE + KTKK +ED
Sbjct: 10064 SEIAAKKSAEQKSKLETEAKTKKVIED 10090
>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
protein.
Length = 18534
Score = 28.3 bits (60), Expect = 5.9
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = -3
Query: 730 SKAVAARQRKENAKLEKDQKTKKAVED 650
S+ A + ++ +KLE + KTKK +ED
Sbjct: 10064 SEIAAKKSAEQKSKLETEAKTKKVIED 10090
>Z77657-6|CAB01150.2| 607|Caenorhabditis elegans Hypothetical
protein F08H9.1 protein.
Length = 607
Score = 27.9 bits (59), Expect = 7.8
Identities = 19/73 (26%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
Frame = -3
Query: 412 PSKVVIEEPPLEE--NLNRIQLDGELAQTVDEALAILSDKPEVDRHPEKRLKAAFTAFEQ 239
P+K + +E + +L + L +L T+DE S + E++ + F +Q
Sbjct: 237 PTKSIPQEEEFQPATHLKEMLLFRQLPITLDETERRRSMEEEMEEARNSGINTEFIPPQQ 296
Query: 238 INLPRLKAENPSL 200
+++PRL +EN L
Sbjct: 297 MDVPRLVSENMDL 309
>AL132952-19|CAB63382.2| 1677|Caenorhabditis elegans Hypothetical
protein Y51H4A.12 protein.
Length = 1677
Score = 27.9 bits (59), Expect = 7.8
Identities = 17/65 (26%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Frame = -3
Query: 463 ISQAKEKMAK-PETAKPVPSKVVIEEPPLEENLNRIQLDGELAQTVDEALAILSDKPEVD 287
+ +A EK+ K P++ + P+K ++PPL++ ++DG + + + S PE
Sbjct: 1471 VEKAVEKVEKKPKSPQKPPAKPTAQKPPLKKT---EEVDGIEREASESSSKESSVAPEEK 1527
Query: 286 RHPEK 272
++P+K
Sbjct: 1528 KNPKK 1532
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,477,240
Number of Sequences: 27780
Number of extensions: 219819
Number of successful extensions: 896
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 831
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 894
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1714401074
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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