Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12b10r
         (732 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    23   3.9  
M29490-1|AAA27725.1|  109|Apis mellifera protein ( Bee homeobox-...    21   9.0  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   9.0  

>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -3

Query: 409 SKVVIEEPPLEENLNRIQLDGELAQTV 329
           + + ++EPPL +NLN + L   L  T+
Sbjct: 239 ANISLDEPPLGKNLN-LSLHASLNHTL 264


>M29490-1|AAA27725.1|  109|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone E30. ).
          Length = 109

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -3

Query: 277 EKRLKAAFTAFEQINLPRLKAENPSLRLSQLKEL 176
           EKR + AF+A +   L R  AEN  L   + ++L
Sbjct: 20  EKRPRTAFSAEQLARLKREFAENRYLTERRRQQL 53


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = -1

Query: 258  PSQPLNKSICHVLKPRTLRSGFLS 187
            P QP + + C  L  +T+R  ++S
Sbjct: 1081 PEQPPHDTTCTTLTSQTIRISWMS 1104


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 148,962
Number of Sequences: 438
Number of extensions: 2789
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22779405
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)