Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV12b10r
(732 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g16210.1 68414.m01941 expressed protein ESTs gb|T04357 and gb... 93 1e-19
At1g23420.1 68414.m02934 inner no outer protein (INO) identical ... 36 0.028
At1g20960.1 68414.m02624 U5 small nuclear ribonucleoprotein heli... 32 0.34
At2g45190.1 68415.m05627 axial regulator YABBY1 (YABBY1) / abnor... 32 0.45
At2g26580.2 68415.m03189 plant-specific transcription factor YAB... 31 1.0
At2g26580.1 68415.m03188 plant-specific transcription factor YAB... 31 1.0
At4g00180.1 68417.m00019 axial regulator YABBY3 (YABBY3) identic... 30 1.4
At5g03140.1 68418.m00262 lectin protein kinase family protein co... 30 1.8
At3g28730.1 68416.m03587 structure-specific recognition protein ... 30 1.8
At1g69180.1 68414.m07917 transcription factor CRC (CRABS CLAW) i... 30 1.8
At1g05990.1 68414.m00627 calcium-binding protein, putative stron... 30 1.8
At5g67220.1 68418.m08473 nitrogen regulation family protein simi... 29 2.4
At5g13010.1 68418.m01491 RNA helicase, putative similar to DEAH-... 29 3.2
At2g42270.1 68415.m05232 U5 small nuclear ribonucleoprotein heli... 29 3.2
At5g04330.1 68418.m00425 cytochrome P450, putative / ferulate-5-... 28 5.6
At2g20590.2 68415.m02408 reticulon family protein non-consensus ... 28 5.6
At2g20590.1 68415.m02407 reticulon family protein non-consensus ... 28 5.6
At5g01170.1 68418.m00021 glycine-rich protein predicted proteins... 28 7.3
At3g13225.1 68416.m01660 WW domain-containing protein contains P... 27 9.7
>At1g16210.1 68414.m01941 expressed protein ESTs gb|T04357 and
gb|AA595092 come from this gene
Length = 234
Score = 93.5 bits (222), Expect = 1e-19
Identities = 54/114 (47%), Positives = 70/114 (61%), Gaps = 2/114 (1%)
Frame = -3
Query: 466 QISQAKEKMAKPETAKPVPSKVVIEEPPLEENLNRIQLDGELAQTVDEALA--ILSDKPE 293
Q++ AK+ + + + E+ L N NR E A TVDEALA +SD
Sbjct: 114 QVALAKKAEDSKKKQTRMAGEDEYEKMVLVTNTNRDDSLIE-AHTVDEALARITVSDNLP 172
Query: 292 VDRHPEKRLKAAFTAFEQINLPRLKAENPSLRLSQLKELLKKEWHKSPQNPLNQ 131
VDRHPEKRLKA+F A+E++ LPRLK+E P L +Q K+L+ K W KSP NPLNQ
Sbjct: 173 VDRHPEKRLKASFKAYEEVELPRLKSEKPGLTHTQYKDLIWKMWKKSPDNPLNQ 226
>At1g23420.1 68414.m02934 inner no outer protein (INO) identical to
INNER NO OUTER (INO) [Arabidopsis thaliana] GI:6684816
Length = 231
Score = 35.9 bits (79), Expect = 0.028
Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Frame = -3
Query: 292 VDRHPEKRLKA--AFTAFEQINLPRLKAENPSLRLSQLKELLKKEWHKSP 149
V++ PEKR +A A+ F + + RLKA+NPS+ + L K W P
Sbjct: 128 VNKPPEKRQRAPSAYNCFIKEEIRRLKAQNPSMAHKEAFSLAAKNWAHFP 177
>At1g20960.1 68414.m02624 U5 small nuclear ribonucleoprotein helicase,
putative similar to SP|O75643 U5 small nuclear
ribonucleoprotein 200 kDa helicase {Homo sapiens};
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF02889:
Sec63 domain
Length = 2171
Score = 32.3 bits (70), Expect = 0.34
Identities = 30/107 (28%), Positives = 51/107 (47%)
Frame = -3
Query: 451 KEKMAKPETAKPVPSKVVIEEPPLEENLNRIQLDGELAQTVDEALAILSDKPEVDRHPEK 272
K ++AK P+P K +EEP + N + L ++Q E L++ SD + + +
Sbjct: 1058 KMELAKLLDRVPIPIKETLEEPSAKIN---VLLQAYISQLKLEGLSLTSDMVYITQSAGR 1114
Query: 271 RLKAAFTAFEQINLPRLKAENPSLRLSQLKELLKKEWHKSPQNPLNQ 131
++A + +I L R A+ L+ K + K+ W S Q PL Q
Sbjct: 1115 LVRALY----EIVLKRGWAQLAEKALNLSKMVGKRMW--SVQTPLRQ 1155
>At2g45190.1 68415.m05627 axial regulator YABBY1 (YABBY1) / abnormal
floral organs protein (AFO) / filamentous flower protein
(FIL) identical to YABBY1 [Arabidopsis thaliana]
GI:4928749, abnormal floral organs protein (AFO)
[Arabidopsis thaliana] GI:4322477; supporting cDNA
gi|4322476|gb|AF087015.1|AF087015
Length = 229
Score = 31.9 bits (69), Expect = 0.45
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Frame = -3
Query: 298 PEVDRHPEKRLK--AAFTAFEQINLPRLKAENPSLRLSQLKELLKKEWHKSP 149
P V+R PEKR + +A+ F + + R+KA NP + + K W P
Sbjct: 132 PPVNRPPEKRQRVPSAYNRFIKEEIQRIKAGNPDISHREAFSAAAKNWAHFP 183
>At2g26580.2 68415.m03189 plant-specific transcription factor YABBY
family protein contains Pfam profile: PF04690 YABBY
protein
Length = 164
Score = 30.7 bits (66), Expect = 1.0
Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Frame = -3
Query: 310 LSDKPEVDRHPEKRLK--AAFTAFEQINLPRLKAENPSLRLSQLKELLKKEWHKSP 149
++++ V+R PEKR + +A+ F + + R+KA NP + + K W P
Sbjct: 92 ITEQRIVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFP 147
>At2g26580.1 68415.m03188 plant-specific transcription factor YABBY
family protein contains Pfam profile: PF04690 YABBY
protein
Length = 164
Score = 30.7 bits (66), Expect = 1.0
Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Frame = -3
Query: 310 LSDKPEVDRHPEKRLK--AAFTAFEQINLPRLKAENPSLRLSQLKELLKKEWHKSP 149
++++ V+R PEKR + +A+ F + + R+KA NP + + K W P
Sbjct: 92 ITEQRIVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFP 147
>At4g00180.1 68417.m00019 axial regulator YABBY3 (YABBY3) identical
to YABBY3 [Arabidopsis thaliana] GI:4928753
Length = 240
Score = 30.3 bits (65), Expect = 1.4
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Frame = -3
Query: 298 PEVDRHPEKRLK--AAFTAFEQINLPRLKAENPSLRLSQLKELLKKEWHKSP 149
P +R PEKR + +A+ F + + R+KA NP + + K W P
Sbjct: 144 PPANRPPEKRQRVPSAYNRFIKEEIQRIKAGNPDISHREAFSAAAKNWAHFP 195
>At5g03140.1 68418.m00262 lectin protein kinase family protein
contains Pfam domains, PF00138: Legume lectins alpha
domain, PF00139: Legume lectins beta domain and PF00069:
Protein kinase domain
Length = 711
Score = 29.9 bits (64), Expect = 1.8
Identities = 20/57 (35%), Positives = 27/57 (47%)
Frame = -3
Query: 373 NLNRIQLDGELAQTVDEALAILSDKPEVDRHPEKRLKAAFTAFEQINLPRLKAENPS 203
N I+L EL+ A L KP RHPE + A+FT + ++ L NPS
Sbjct: 56 NNGTIKLTRELSVPTSTAGKALYGKPVKFRHPETKSPASFTTYFSFSVTNL---NPS 109
>At3g28730.1 68416.m03587 structure-specific recognition protein 1 /
high mobility group protein / HMG protein nearly
identical to SP|Q05153 Structure-specific recognition
protein 1 homolog (HMG protein) {Arabidopsis thaliana};
contains Pfam profile PF00505: HMG (high mobility group)
box; contains Pfam profile PF03531: Structure-specific
recognition protein
Length = 646
Score = 29.9 bits (64), Expect = 1.8
Identities = 12/49 (24%), Positives = 25/49 (51%)
Frame = -3
Query: 301 KPEVDRHPEKRLKAAFTAFEQINLPRLKAENPSLRLSQLKELLKKEWHK 155
K + D + KR + F F Q+ +K E+P + ++ ++L +W +
Sbjct: 554 KKKKDPNAPKRAMSGFMFFSQMERDNIKKEHPGIAFGEVGKVLGDKWRQ 602
>At1g69180.1 68414.m07917 transcription factor CRC (CRABS CLAW)
identical to transcription factor CRC (CRABS CLAW)
GI:4836698 [Arabidopsis thaliana]
Length = 181
Score = 29.9 bits (64), Expect = 1.8
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Frame = -3
Query: 298 PEVDRHPEK--RLKAAFTAFEQINLPRLKAENPSLRLSQLKELLKKEWHK-SPQNP 140
P V + PEK RL +A+ F + + R+K+ NP + + K W K P +P
Sbjct: 106 PFVVKPPEKKQRLPSAYNRFMRDEIQRIKSANPEIPHREAFSAAAKNWAKYIPNSP 161
>At1g05990.1 68414.m00627 calcium-binding protein, putative strong
similarity to calcium-binding protein [Lotus japonicus]
GI:18413495; contains INTERPRO:IPR002048 calcium-binding
EF-hand domain
Length = 150
Score = 29.9 bits (64), Expect = 1.8
Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 5/81 (6%)
Frame = -3
Query: 403 VVIEEPPLEENLNRIQLDGELAQTVDEALAILSDKPEVDRHPEKRLKAAFTAFEQ----- 239
+ I + L + + +I ++G+ +DE + + + E+ +K AF F+Q
Sbjct: 35 IYIPDKELTQMIEKIDVNGDGCVDIDEFGELYKTIMDEEDEEEEDMKEAFNVFDQNGDGF 94
Query: 238 INLPRLKAENPSLRLSQLKEL 176
I + LKA SL L Q K L
Sbjct: 95 ITVDELKAVLSSLGLKQGKTL 115
>At5g67220.1 68418.m08473 nitrogen regulation family protein similar
to unknown protein (gb|AAF51525.1) ; contains Pfam
domain PF01207: Dihydrouridine synthase (Dus); similar
to (SP:P45672) NIFR3-like protein (SP:P45672)
[Azospirillum brasilense]
Length = 423
Score = 29.5 bits (63), Expect = 2.4
Identities = 24/83 (28%), Positives = 43/83 (51%)
Frame = -3
Query: 472 RAQISQAKEKMAKPETAKPVPSKVVIEEPPLEENLNRIQLDGELAQTVDEALAILSDKPE 293
++ ISQ + P+ KP PS+V L++ L Q DG++ +TVD A A L
Sbjct: 15 KSLISQTRAMTQNPDP-KPDPSQV------LDDILCSEQRDGQIEETVDTAPASLGSPSR 67
Query: 292 VDRHPEKRLKAAFTAFEQINLPR 224
V + R++ A+ ++++ P+
Sbjct: 68 V-LSIDTRVERAWAHWKKLGRPK 89
>At5g13010.1 68418.m01491 RNA helicase, putative similar to DEAH-box
RNA helicase [Chlamydomonas reinhardtii] GI:12044832;
contains Pfam profiles PF04408: Helicase associated
domain (HA2), PF00271: Helicase conserved C-terminal
domain
Length = 1226
Score = 29.1 bits (62), Expect = 3.2
Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Frame = -3
Query: 391 EPPLEENLNRIQLDGELAQTVDEALAILS--DKPEVDRHPEKRLKAAFTAFEQINLP 227
E PL+ L ++ L GE +DE L I+S P V P++R + + A E+ +P
Sbjct: 950 EFPLDPPLAKMLLMGERLDCIDEVLTIVSMLSVPSVFFRPKERAEESDAAREKFFVP 1006
>At2g42270.1 68415.m05232 U5 small nuclear ribonucleoprotein helicase,
putative
Length = 2172
Score = 29.1 bits (62), Expect = 3.2
Identities = 30/107 (28%), Positives = 51/107 (47%)
Frame = -3
Query: 451 KEKMAKPETAKPVPSKVVIEEPPLEENLNRIQLDGELAQTVDEALAILSDKPEVDRHPEK 272
K ++AK P+P K +E+P + N + L +++ E L++ SD + + +
Sbjct: 1059 KMELAKLLDRVPIPVKETLEDPSAKIN---VLLQVYISKLKLEGLSLTSDMVYITQSAGR 1115
Query: 271 RLKAAFTAFEQINLPRLKAENPSLRLSQLKELLKKEWHKSPQNPLNQ 131
L+A F +I L R A+ L+ K + K+ W S Q PL Q
Sbjct: 1116 LLRAIF----EIVLKRGWAQLSQKALNLSKMVGKRMW--SVQTPLWQ 1156
>At5g04330.1 68418.m00425 cytochrome P450, putative /
ferulate-5-hydroxylase, putative Similar to Cytochrome
P450 84A1 Ferulate-5-hydroxylase)(SP:Q42600)[Arabidopsis
thaliana];
Length = 512
Score = 28.3 bits (60), Expect = 5.6
Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 1/81 (1%)
Frame = -3
Query: 376 ENLNRIQLDGELAQTVDEALAILSDKPEVDRHPEKRLKAAFTAFEQINLPRLKAENPSL- 200
+N+ I +D T ALAI E+ R PE + + L R + E+ L
Sbjct: 295 DNIKGIIMDVMFGGTETVALAIEWVLTEILRSPENMKRVQDELTSVVGLDRWRVEDTHLE 354
Query: 199 RLSQLKELLKKEWHKSPQNPL 137
+L+ LK +LK+ P PL
Sbjct: 355 KLTFLKCILKETLRLHPPFPL 375
>At2g20590.2 68415.m02408 reticulon family protein non-consensus AA
donor splice site at 46485 and non-consensus GG acceptor
splice site at 46563, confirmed by Ceres cDNA 1885;
contains Pfam profile PF02453: Reticulon
Length = 323
Score = 28.3 bits (60), Expect = 5.6
Identities = 12/42 (28%), Positives = 23/42 (54%)
Frame = -3
Query: 433 PETAKPVPSKVVIEEPPLEENLNRIQLDGELAQTVDEALAIL 308
P + PVP + ++ PP +R +L L T ++A+A++
Sbjct: 39 PNPSSPVPLRDILLLPPSPLRKSRTRLSDRLEMTSEDAMAVV 80
>At2g20590.1 68415.m02407 reticulon family protein non-consensus AA
donor splice site at 46485 and non-consensus GG acceptor
splice site at 46563, confirmed by Ceres cDNA 1885;
contains Pfam profile PF02453: Reticulon
Length = 431
Score = 28.3 bits (60), Expect = 5.6
Identities = 12/42 (28%), Positives = 23/42 (54%)
Frame = -3
Query: 433 PETAKPVPSKVVIEEPPLEENLNRIQLDGELAQTVDEALAIL 308
P + PVP + ++ PP +R +L L T ++A+A++
Sbjct: 39 PNPSSPVPLRDILLLPPSPLRKSRTRLSDRLEMTSEDAMAVV 80
>At5g01170.1 68418.m00021 glycine-rich protein predicted proteins,
Arabidopsis thaliana
Length = 568
Score = 27.9 bits (59), Expect = 7.3
Identities = 19/63 (30%), Positives = 28/63 (44%)
Frame = -1
Query: 273 NDLKQPSQPLNKSICHVLKPRTLRSGFLSSKNC*RKNGTNHHRTPSIKGSELMRLLLNSF 94
++L PSQP S L P SGF S C R + +H+ P S +++
Sbjct: 14 DELAPPSQPHRLSTSCDLHPEERFSGFCPSCLCDRLSVLDHNAAPPPSSSSRKPPSISAV 73
Query: 93 SLR 85
SL+
Sbjct: 74 SLK 76
>At3g13225.1 68416.m01660 WW domain-containing protein contains Pfam
profile PF00397: WW domain
Length = 863
Score = 27.5 bits (58), Expect = 9.7
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -3
Query: 442 MAKPETAKPVPSKVVIEEPPLEENLNRIQLDGELAQT 332
M +PET K P + ++ + E + DGELAQ+
Sbjct: 382 MDEPETNKSPPKEKLVADANTESESEDSERDGELAQS 418
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,818,916
Number of Sequences: 28952
Number of extensions: 206356
Number of successful extensions: 699
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 684
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 699
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1604469728
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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