Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12b10f
         (604 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual           29   0.52 
SPAC1565.07c |||TATA binding protein interacting protein |Schizo...    26   4.9  
SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc...    25   8.5  

>SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1097

 Score = 29.1 bits (62), Expect = 0.52
 Identities = 16/36 (44%), Positives = 21/36 (58%)
 Frame = +2

Query: 200 LCRYFLYSSICTKCQRNSLERIAKL*QLDSAKKMLN 307
           +C+  LYSSICT C  N   +  KL +L S   +LN
Sbjct: 501 VCQIILYSSICTSCSINESLK-TKLPKLISFGLLLN 535


>SPAC1565.07c |||TATA binding protein interacting protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1220

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 20/59 (33%), Positives = 25/59 (42%), Gaps = 2/59 (3%)
 Frame = -1

Query: 412 FFLALPFSVVSS*VYHHYLPILHPLQLSLFFDLFPV*HFLCAVELL--QLCYSLQ*ISL 242
           FF  L     S  +YH  L  L P    L  D+F      C  EL+  + CY L  +SL
Sbjct: 144 FFAILCVVCDSLEIYHSNLSTLLPNNFELCIDVFQKCTTQCQRELIIKKACYLLSDVSL 202


>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 822

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +1

Query: 259 ENSKAVAARQRKENAKLEKDQKTKKAVED 345
           E  K   A+ +  N KLEKD+++ K +++
Sbjct: 542 EQQKKAKAKVKAMNKKLEKDKQSGKVLDE 570


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,958,789
Number of Sequences: 5004
Number of extensions: 36166
Number of successful extensions: 125
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)