BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fmgV12b10f (604 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 04_04_0791 + 28088237-28088809,28089311-28089430,28089585-280896... 37 0.014 03_01_0226 + 1795120-1795686,1796040-1796171 37 0.014 02_05_0970 - 33179180-33179210,33179297-33179441,33180307-331803... 28 5.0 07_01_0179 - 1259353-1259466,1260818-1261150,1261523-1261681,126... 27 8.7 03_06_0499 - 34354040-34354528 27 8.7 02_05_0657 + 30673852-30674624,30674815-30674833 27 8.7 >04_04_0791 + 28088237-28088809,28089311-28089430,28089585-28089662, 28089808-28089938,28090390-28090435,28090529-28090636 Length = 351 Score = 36.7 bits (81), Expect = 0.014 Identities = 17/41 (41%), Positives = 27/41 (65%) Frame = +1 Query: 238 MPKKFTGENSKAVAARQRKENAKLEKDQKTKKAVEDAEWED 360 MPKK G NSKA AAR+R+ A+ ++ + ++A E+ W + Sbjct: 1 MPKKM-GVNSKAEAARERRSVAEADRRDRVERAKEEEYWRE 40 >03_01_0226 + 1795120-1795686,1796040-1796171 Length = 232 Score = 36.7 bits (81), Expect = 0.014 Identities = 17/40 (42%), Positives = 27/40 (67%) Frame = +1 Query: 238 MPKKFTGENSKAVAARQRKENAKLEKDQKTKKAVEDAEWE 357 MPKK G N+KA AAR+R+ A+ ++ + +A E+A W+ Sbjct: 1 MPKKM-GVNTKAEAARERRSAAEADRRDRDARAKEEAYWQ 39 >02_05_0970 - 33179180-33179210,33179297-33179441,33180307-33180362, 33180650-33180691,33180814-33180866,33181059-33181490, 33181630-33181707,33181785-33181870,33183588-33183689, 33183754-33183960,33184976-33185336,33185463-33185626, 33185709-33185817,33186468-33186485 Length = 627 Score = 28.3 bits (60), Expect = 5.0 Identities = 11/32 (34%), Positives = 16/32 (50%) Frame = +1 Query: 34 FYLVPRTSQVFCTAVNEEYILKFKRIQTLPVY 129 FY +PR C A Y L++K + L +Y Sbjct: 535 FYSMPRDEAQLCAASELTYSLRYKNVDVLALY 566 >07_01_0179 - 1259353-1259466,1260818-1261150,1261523-1261681, 1261914-1261946 Length = 212 Score = 27.5 bits (58), Expect = 8.7 Identities = 14/47 (29%), Positives = 24/47 (51%) Frame = -2 Query: 243 WHFVQILEYRKYLHKLC*NFTHALLLHMYISILFYYIYIHWERLYSL 103 W ++ E Y +F+H L + +SI F+Y WE+++SL Sbjct: 150 WRPIRFTETVAYAPNYACSFSHLLQQLLRMSIAFFY----WEKIFSL 192 >03_06_0499 - 34354040-34354528 Length = 162 Score = 27.5 bits (58), Expect = 8.7 Identities = 16/34 (47%), Positives = 21/34 (61%) Frame = -1 Query: 445 LQLSFVIDLNVFFLALPFSVVSS*VYHHYLPILH 344 L L+FV+ L VF ALPF+ S +HH+ LH Sbjct: 7 LFLAFVL-LAVFLAALPFAESSGRHHHHHHSHLH 39 >02_05_0657 + 30673852-30674624,30674815-30674833 Length = 263 Score = 27.5 bits (58), Expect = 8.7 Identities = 10/24 (41%), Positives = 17/24 (70%) Frame = +2 Query: 203 CRYFLYSSICTKCQRNSLERIAKL 274 CR L +S+CT C R+++ R++ L Sbjct: 86 CRSDLPASVCTGCVRSAISRLSSL 109 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 11,847,855 Number of Sequences: 37544 Number of extensions: 196412 Number of successful extensions: 457 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 451 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 457 length of database: 14,793,348 effective HSP length: 79 effective length of database: 11,827,372 effective search space used: 1431112012 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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