BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fmgV12b10f (604 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AC025727-8|AAG23390.2| 223|Caenorhabditis elegans Hypothetical ... 53 1e-07 U50307-1|AAK71365.1| 586|Caenorhabditis elegans Serine palmitoy... 29 3.4 AL117204-38|CAL49444.1| 982|Caenorhabditis elegans Hypothetical... 29 3.4 AL117204-31|CAB55122.2| 727|Caenorhabditis elegans Hypothetical... 29 3.4 Z70266-3|CAA94207.1| 71|Caenorhabditis elegans Hypothetical pr... 28 4.5 AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 prote... 28 4.5 AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote... 28 4.5 AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote... 28 4.5 Z46267-15|CAI79255.1| 1100|Caenorhabditis elegans Hypothetical p... 28 5.9 Z46267-14|CAI79254.1| 1030|Caenorhabditis elegans Hypothetical p... 28 5.9 Z46267-12|CAD45595.2| 528|Caenorhabditis elegans Hypothetical p... 28 5.9 Z46267-11|CAA86426.1| 611|Caenorhabditis elegans Hypothetical p... 28 5.9 Z46267-10|CAA86425.1| 581|Caenorhabditis elegans Hypothetical p... 28 5.9 Z46267-6|CAA86428.2| 1215|Caenorhabditis elegans Hypothetical pr... 28 5.9 U23523-11|AAP68942.2| 324|Caenorhabditis elegans Troponin t pro... 27 7.8 U23523-10|AAP68941.1| 428|Caenorhabditis elegans Troponin t pro... 27 7.8 >AC025727-8|AAG23390.2| 223|Caenorhabditis elegans Hypothetical protein Y73E7A.1a protein. Length = 223 Score = 53.2 bits (122), Expect = 1e-07 Identities = 24/42 (57%), Positives = 27/42 (64%) Frame = +1 Query: 238 MPKKFTGENSKAVAARQRKENAKLEKDQKTKKAVEDAEWEDN 363 MPKKF EN K AAR RK AK ++ K KA EDA+W DN Sbjct: 1 MPKKFASENPKVTAARDRKATAKKDEADKKAKATEDAKWVDN 42 >U50307-1|AAK71365.1| 586|Caenorhabditis elegans Serine palmitoyl transferase familyprotein 2, isoform b protein. Length = 586 Score = 28.7 bits (61), Expect = 3.4 Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 5/55 (9%) Frame = +1 Query: 214 SIFQYLHKMPKKFTGENSKAV-----AARQRKENAKLEKDQKTKKAVEDAEWEDN 363 S F++LHK+P + T K+ A+QR+EN +L+K + + E +D+ Sbjct: 10 SPFRFLHKLPIRLTFTEKKSPLLISDLAKQREENDELKKRTHILECAWNQEHDDD 64 >AL117204-38|CAL49444.1| 982|Caenorhabditis elegans Hypothetical protein Y116A8C.16c protein. Length = 982 Score = 28.7 bits (61), Expect = 3.4 Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 1/39 (2%) Frame = -2 Query: 186 FTHALLLHMYISILF-YYIYIHWERLYSLKLKDILFVHS 73 F HA ++H+ +S+LF YY+ E L + K IL+ S Sbjct: 715 FVHAGVIHLALSLLFQYYVMKDLENLIASKRMAILYFAS 753 >AL117204-31|CAB55122.2| 727|Caenorhabditis elegans Hypothetical protein Y116A8C.16a protein. Length = 727 Score = 28.7 bits (61), Expect = 3.4 Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 1/39 (2%) Frame = -2 Query: 186 FTHALLLHMYISILF-YYIYIHWERLYSLKLKDILFVHS 73 F HA ++H+ +S+LF YY+ E L + K IL+ S Sbjct: 460 FVHAGVIHLALSLLFQYYVMKDLENLIASKRMAILYFAS 498 >Z70266-3|CAA94207.1| 71|Caenorhabditis elegans Hypothetical protein C40C9.4 protein. Length = 71 Score = 28.3 bits (60), Expect = 4.5 Identities = 15/41 (36%), Positives = 22/41 (53%) Frame = +1 Query: 238 MPKKFTGENSKAVAARQRKENAKLEKDQKTKKAVEDAEWED 360 MP FT + +V Q +EN +L +QK K V+ +ED Sbjct: 1 MPPFFTEKLQGSVEELQNQENEELTIEQKKKAGVDQNYFED 41 >AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 protein protein. Length = 10578 Score = 28.3 bits (60), Expect = 4.5 Identities = 11/27 (40%), Positives = 18/27 (66%) Frame = +1 Query: 265 SKAVAARQRKENAKLEKDQKTKKAVED 345 S+ A + ++ +KLE + KTKK +ED Sbjct: 10044 SEIAAKKSAEQKSKLETEAKTKKVIED 10070 >AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein protein. Length = 18519 Score = 28.3 bits (60), Expect = 4.5 Identities = 11/27 (40%), Positives = 18/27 (66%) Frame = +1 Query: 265 SKAVAARQRKENAKLEKDQKTKKAVED 345 S+ A + ++ +KLE + KTKK +ED Sbjct: 10064 SEIAAKKSAEQKSKLETEAKTKKVIED 10090 >AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein protein. Length = 18534 Score = 28.3 bits (60), Expect = 4.5 Identities = 11/27 (40%), Positives = 18/27 (66%) Frame = +1 Query: 265 SKAVAARQRKENAKLEKDQKTKKAVED 345 S+ A + ++ +KLE + KTKK +ED Sbjct: 10064 SEIAAKKSAEQKSKLETEAKTKKVIED 10090 >Z46267-15|CAI79255.1| 1100|Caenorhabditis elegans Hypothetical protein F49E2.5j protein. Length = 1100 Score = 27.9 bits (59), Expect = 5.9 Identities = 12/29 (41%), Positives = 20/29 (68%) Frame = +1 Query: 259 ENSKAVAARQRKENAKLEKDQKTKKAVED 345 + S AV + RK+N K +K +++KAVE+ Sbjct: 480 DESTAVTSENRKKNKKDKKKSESEKAVEE 508 >Z46267-14|CAI79254.1| 1030|Caenorhabditis elegans Hypothetical protein F49E2.5i protein. Length = 1030 Score = 27.9 bits (59), Expect = 5.9 Identities = 12/29 (41%), Positives = 20/29 (68%) Frame = +1 Query: 259 ENSKAVAARQRKENAKLEKDQKTKKAVED 345 + S AV + RK+N K +K +++KAVE+ Sbjct: 480 DESTAVTSENRKKNKKDKKKSESEKAVEE 508 >Z46267-12|CAD45595.2| 528|Caenorhabditis elegans Hypothetical protein F49E2.5g protein. Length = 528 Score = 27.9 bits (59), Expect = 5.9 Identities = 12/29 (41%), Positives = 20/29 (68%) Frame = +1 Query: 259 ENSKAVAARQRKENAKLEKDQKTKKAVED 345 + S AV + RK+N K +K +++KAVE+ Sbjct: 397 DESTAVTSENRKKNKKDKKKSESEKAVEE 425 >Z46267-11|CAA86426.1| 611|Caenorhabditis elegans Hypothetical protein F49E2.5f protein. Length = 611 Score = 27.9 bits (59), Expect = 5.9 Identities = 12/29 (41%), Positives = 20/29 (68%) Frame = +1 Query: 259 ENSKAVAARQRKENAKLEKDQKTKKAVED 345 + S AV + RK+N K +K +++KAVE+ Sbjct: 480 DESTAVTSENRKKNKKDKKKSESEKAVEE 508 >Z46267-10|CAA86425.1| 581|Caenorhabditis elegans Hypothetical protein F49E2.5e protein. Length = 581 Score = 27.9 bits (59), Expect = 5.9 Identities = 12/29 (41%), Positives = 20/29 (68%) Frame = +1 Query: 259 ENSKAVAARQRKENAKLEKDQKTKKAVED 345 + S AV + RK+N K +K +++KAVE+ Sbjct: 480 DESTAVTSENRKKNKKDKKKSESEKAVEE 508 >Z46267-6|CAA86428.2| 1215|Caenorhabditis elegans Hypothetical protein F49E2.5a protein. Length = 1215 Score = 27.9 bits (59), Expect = 5.9 Identities = 12/29 (41%), Positives = 20/29 (68%) Frame = +1 Query: 259 ENSKAVAARQRKENAKLEKDQKTKKAVED 345 + S AV + RK+N K +K +++KAVE+ Sbjct: 480 DESTAVTSENRKKNKKDKKKSESEKAVEE 508 >U23523-11|AAP68942.2| 324|Caenorhabditis elegans Troponin t protein 2, isoform b protein. Length = 324 Score = 27.5 bits (58), Expect = 7.8 Identities = 11/31 (35%), Positives = 20/31 (64%) Frame = +1 Query: 259 ENSKAVAARQRKENAKLEKDQKTKKAVEDAE 351 E+ + A R+R++ + KD++ +KA DAE Sbjct: 21 EDERQFAERRRQDEERRRKDEEDRKAKADAE 51 >U23523-10|AAP68941.1| 428|Caenorhabditis elegans Troponin t protein 2, isoform a protein. Length = 428 Score = 27.5 bits (58), Expect = 7.8 Identities = 11/31 (35%), Positives = 20/31 (64%) Frame = +1 Query: 259 ENSKAVAARQRKENAKLEKDQKTKKAVEDAE 351 E+ + A R+R++ + KD++ +KA DAE Sbjct: 125 EDERQFAERRRQDEERRRKDEEDRKAKADAE 155 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 10,844,743 Number of Sequences: 27780 Number of extensions: 201227 Number of successful extensions: 695 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 645 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 695 length of database: 12,740,198 effective HSP length: 78 effective length of database: 10,573,358 effective search space used: 1289949676 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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