Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12b09r
         (498 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    21   6.2  
AF321227-6|AAK16426.1|  150|Tribolium castaneum Pb protein.            21   6.2  
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    21   6.2  
DQ659253-1|ABG47451.1|  439|Tribolium castaneum imaginal disc gr...    21   8.1  

>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 21.0 bits (42), Expect = 6.2
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = +2

Query: 194 NWDTPTSRA 220
           +WDTPTS A
Sbjct: 6   DWDTPTSSA 14


>AF321227-6|AAK16426.1|  150|Tribolium castaneum Pb protein.
          Length = 150

 Score = 21.0 bits (42), Expect = 6.2
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = -2

Query: 107 SMYRFGDAKPHLSTRKTH 54
           SM  F  A PHLS   TH
Sbjct: 66  SMAEFMTALPHLSGDMTH 83


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 21.0 bits (42), Expect = 6.2
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = -2

Query: 107 SMYRFGDAKPHLSTRKTH 54
           SM  F  A PHLS   TH
Sbjct: 66  SMAEFMTALPHLSGDMTH 83


>DQ659253-1|ABG47451.1|  439|Tribolium castaneum imaginal disc
           growth factor 2 protein.
          Length = 439

 Score = 20.6 bits (41), Expect = 8.1
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -2

Query: 248 PPVDASGPSEPG 213
           PP+  SGP+E G
Sbjct: 316 PPLHISGPAEAG 327


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 102,194
Number of Sequences: 336
Number of extensions: 1865
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 11735024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)