Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12b09f
         (468 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF313909-1|AAL99382.1| 1024|Anopheles gambiae collagen IV alpha ...    25   1.00 
AY496421-1|AAS80138.1|  439|Anopheles gambiae bacteria responsiv...    23   4.0  
AF395080-1|AAK97462.1|  537|Anopheles gambiae zinc finger transc...    22   9.3  

>AF313909-1|AAL99382.1| 1024|Anopheles gambiae collagen IV alpha 1
           chain protein.
          Length = 1024

 Score = 25.4 bits (53), Expect = 1.00
 Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
 Frame = +3

Query: 219 LAGCQREVHGARR*TRQGRPS-PGSRGVPVRDC 314
           L G + +V    R  R G P  PG +G P RDC
Sbjct: 762 LQGLRGDVGPEGRPGRDGAPGLPGPKGEPGRDC 794



 Score = 22.2 bits (45), Expect = 9.3
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -1

Query: 306 ELGHPYFPGSDGPDASTGGRRVP 238
           ++G P FPG  G   +TG   +P
Sbjct: 377 DMGVPGFPGVKGDKGTTGLPGIP 399


>AY496421-1|AAS80138.1|  439|Anopheles gambiae bacteria responsive
           protein 2 protein.
          Length = 439

 Score = 23.4 bits (48), Expect = 4.0
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = +2

Query: 251 PPVDASGPSEPG 286
           PP+ A GPS PG
Sbjct: 315 PPLPADGPSNPG 326


>AF395080-1|AAK97462.1|  537|Anopheles gambiae zinc finger
           transcription factor pannier protein.
          Length = 537

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +3

Query: 360 VQKLSTKRISLQCTDLGT 413
           V + +T+R+ L CT+ GT
Sbjct: 165 VSQTATRRLGLCCTNCGT 182


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 433,370
Number of Sequences: 2352
Number of extensions: 7589
Number of successful extensions: 25
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 563,979
effective HSP length: 59
effective length of database: 425,211
effective search space used: 40820256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)