Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12b09f
         (468 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g41520.1 68418.m05044 40S ribosomal protein S10 (RPS10B) cont...    28   3.6  
At4g35070.1 68417.m04978 expressed protein                             27   4.8  
At4g14280.1 68417.m02201 hypothetical protein                          27   6.3  
At1g73810.1 68414.m08546 expressed protein contains Pfam profile...    27   6.3  
At3g24800.1 68416.m03112 PRT1 protein (PRT1) E3, N-end rule ubiq...    27   8.4  

>At5g41520.1 68418.m05044 40S ribosomal protein S10 (RPS10B)
           contains similarity to 40S ribosomal protein S10
          Length = 180

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 17/46 (36%), Positives = 20/46 (43%), Gaps = 3/46 (6%)
 Frame = -1

Query: 333 PAPDKADSRELGHPYFPGSD---GPDASTGGRRVPHVDSLRAGCRS 205
           PA  K   + LG P+  G D   GP    G RR    D  R G +S
Sbjct: 89  PATLKKQQKPLGRPFGGGGDRPRGPPRGDGERRFGDRDGYRGGPKS 134


>At4g35070.1 68417.m04978 expressed protein 
          Length = 265

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 12/46 (26%), Positives = 19/46 (41%)
 Frame = +3

Query: 321 CRGRGRFNFRHSPVQKLSTKRISLQCTDLGTLNLICPPVKHICICL 458
           C G G  N    P +K+        C   G   ++  P +H+C C+
Sbjct: 197 CGGEGDGN--SLPAKKMKMSSCCCNCGSNGVTRVLFLPCRHLCCCM 240


>At4g14280.1 68417.m02201 hypothetical protein
          Length = 798

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 18/43 (41%), Positives = 22/43 (51%)
 Frame = -2

Query: 296 TPTSRARTALTRLPAGAVYLTLTACELAVAARVTTKLRNSLSF 168
           TP  R  T L  +PA    LTL A  LAV  ++ + L  SL F
Sbjct: 27  TPEPRRPTQLPPVPAPEKKLTLFALRLAVLEKIASGL-GSLGF 68


>At1g73810.1 68414.m08546 expressed protein contains Pfam profile
           PF03267: Arabidopsis protein of unknown function, DUF266
          Length = 418

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 13/22 (59%), Positives = 14/22 (63%)
 Frame = +3

Query: 297 VPVRDCPPCRGRGRFNFRHSPV 362
           V V D P   GRGR+N R SPV
Sbjct: 262 VDVYDLPGPAGRGRYNRRMSPV 283


>At3g24800.1 68416.m03112 PRT1 protein (PRT1) E3, N-end rule
           ubiquitin ligase, contains two RING finger domain;
           identical to PRT1 [Arabidopsis thaliana] GI:3319884
          Length = 410

 Score = 26.6 bits (56), Expect = 8.4
 Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
 Frame = +3

Query: 306 RDC--PPCRGRGRFNFRHSPVQKLSTKRISLQCTDLGTLNLICPPV 437
           +DC   P +  GRFN +H+P  +L   R      +  ++ ++  PV
Sbjct: 339 KDCYETPSKVPGRFNQQHTPDHRLELARSPQVLINFNSIGILLGPV 384


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,836,047
Number of Sequences: 28952
Number of extensions: 156705
Number of successful extensions: 345
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 338
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 345
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 791932800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)