Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12b08r
         (721 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY920544-1|AAX62142.1|  463|Tribolium castaneum cytochrome P450 ...    23   3.3  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    23   3.3  
AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    21   7.6  
AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical pro...    21   7.6  
AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory recept...    21   7.6  

>AY920544-1|AAX62142.1|  463|Tribolium castaneum cytochrome P450
           monooxygenase protein.
          Length = 463

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = -1

Query: 643 DNSNDGGPEFAEV 605
           DNSN+GG  FA V
Sbjct: 238 DNSNEGGEGFATV 250


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +3

Query: 36  HRNVLLCLKFQGFFFKSVQK 95
           H N L C   +GFF +S+ K
Sbjct: 199 HYNALTCEGCKGFFRRSITK 218


>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 10/36 (27%), Positives = 15/36 (41%)
 Frame = -3

Query: 542 HFILPIGVRSRLLFVPGGPRAHHLPHHTVQCAEHLP 435
           HF+  I +   L+   G    +    H  +C  HLP
Sbjct: 672 HFLFHIVIGMNLIIHVGTQLIYRPFSHFPRCGNHLP 707


>AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical
           protein protein.
          Length = 205

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = +1

Query: 43  MFCCASNFRVF 75
           ++CC +NF VF
Sbjct: 160 VYCCDNNFNVF 170


>AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory receptor
           candidate 51 protein.
          Length = 771

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 6/18 (33%), Positives = 14/18 (77%)
 Frame = +2

Query: 230 LIHITMKQLVFLNVTVRY 283
           ++ +++K +VF+N  V+Y
Sbjct: 4   ILKLSLKDIVFINPLVKY 21


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,778
Number of Sequences: 336
Number of extensions: 3655
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19155320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)