Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12b08r
         (721 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC644.13c |||Rab GTPase binding |Schizosaccharomyces pombe|chr...   119   5e-28
SPCC61.04c |||Rab GTPase binding|Schizosaccharomyces pombe|chr 3...    58   2e-09
SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schiz...    27   2.7  
SPBC32H8.08c |||mannosyltransferase complex subunit |Schizosacch...    27   3.6  
SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces...    26   4.7  
SPAC29B12.05c |||mitochondrial S-adenosylmethionine-dependent me...    26   6.2  
SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyc...    25   8.2  

>SPAC644.13c |||Rab GTPase binding |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 225

 Score =  119 bits (286), Expect = 5e-28
 Identities = 57/145 (39%), Positives = 86/145 (59%)
 Frame = -1

Query: 718 EWDLWGPVLLCTLMATILQGSAERADNSNDGGPEFAEVFVIVWIGAAVVTINSKLLGGNI 539
           +WDLWGP++   ++A  L  S ++ +  +     F  V  ++W G AV ++N KLLG NI
Sbjct: 90  DWDLWGPLIFSLVIALALALSTDKIERES----VFTVVVALIWFGEAVCSLNIKLLGANI 145

Query: 538 SFFQSVCVLGYCLFPVALALIICRIILFSAQNTFLFFLRLVISMIGFIWATFAATKFLGD 359
           S FQS+C+LGY  FP+ +A I+C  +        L F+R+ + +  + W  FAA   L +
Sbjct: 146 SIFQSMCILGYSSFPLMIASIVCAFVP-------LIFIRIPVIVAMYAWTLFAAMGVLQN 198

Query: 358 SQPEGKKALAVYPICLFYFILSWLV 284
           S    KK LAVYP+ LFYF L+W++
Sbjct: 199 SNLSNKKLLAVYPLFLFYFSLAWII 223


>SPCC61.04c |||Rab GTPase binding|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 227

 Score = 57.6 bits (133), Expect = 2e-09
 Identities = 43/146 (29%), Positives = 68/146 (46%), Gaps = 2/146 (1%)
 Frame = -1

Query: 712 DLWGPVLLCTLMATILQGSAERADNSNDGGPEFAEVFVIVWIGAAVVTINSKLLGG-NIS 536
           D+ GP+L C L +T L         S  G   F  ++ I  +G+  +    +L+   N+ 
Sbjct: 94  DMAGPILFCLLFSTFL---------SLHGRSHFGYIYGIALLGSLSLHFVLRLMSAKNLF 144

Query: 535 FFQSVCVLGYCLFPVALALIICRIILFSAQNTFLFFLRLVISMIGFIWATFAATK-FLGD 359
           F ++V VLGY L P+ +      I  F    TF       ++ +  IW T+AA+  F+G 
Sbjct: 145 FTRTVSVLGYSLLPLVV------IAFFKNIFTFNGIAGYALAALACIWCTYAASAMFVGI 198

Query: 358 SQPEGKKALAVYPICLFYFILSWLVV 281
            Q    + L  YPI LFY + + + V
Sbjct: 199 LQVNNMRFLVAYPIALFYGVFAVITV 224


>SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1273

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
 Frame = +3

Query: 546 PPSSLELIVTTAA---PIQTITNTSANSGPPSLELSALSAEPWRIVAIRVQR 692
           PP++   +V+  A   P+ +   TS N   P+L  S L A P   VAI   R
Sbjct: 310 PPTTAPAVVSPPASSFPLMSSAATSGNISSPALFDSELGARPEGSVAIEPSR 361


>SPBC32H8.08c |||mannosyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 438

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -1

Query: 487 LALIICRIILFSAQNTFLFFLRLVISMIGF 398
           + L+IC+ +LF    T LF   +  SM+GF
Sbjct: 30  IKLLICKFLLFHDFGTALFTSLVKASMLGF 59


>SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 967

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 10/23 (43%), Positives = 19/23 (82%), Gaps = 1/23 (4%)
 Frame = -3

Query: 482 AHHLPHH-TVQCAEHLPILPEAS 417
           A ++PH+ + + ++HLP+LP+AS
Sbjct: 243 ATYIPHNPSKKSSQHLPLLPDAS 265


>SPAC29B12.05c |||mitochondrial S-adenosylmethionine-dependent
           methyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 309

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 7/14 (50%), Positives = 13/14 (92%)
 Frame = +1

Query: 343 SLQVDCHQGILLPR 384
           ++++DC QG+L+PR
Sbjct: 82  NIKIDCQQGVLIPR 95


>SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1428

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 10/42 (23%), Positives = 21/42 (50%)
 Frame = -1

Query: 400 FIWATFAATKFLGDSQPEGKKALAVYPICLFYFILSWLVVSH 275
           ++W TF + K +G  + E   A +  PI      ++W++  +
Sbjct: 155 YLWTTFLSLKGMGFEESEIFGAFSSIPIVSIDEYITWMITEN 196


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,866,364
Number of Sequences: 5004
Number of extensions: 56463
Number of successful extensions: 141
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)