BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fmgV12b08r (721 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC644.13c |||Rab GTPase binding |Schizosaccharomyces pombe|chr... 119 5e-28 SPCC61.04c |||Rab GTPase binding|Schizosaccharomyces pombe|chr 3... 58 2e-09 SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schiz... 27 2.7 SPBC32H8.08c |||mannosyltransferase complex subunit |Schizosacch... 27 3.6 SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces... 26 4.7 SPAC29B12.05c |||mitochondrial S-adenosylmethionine-dependent me... 26 6.2 SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyc... 25 8.2 >SPAC644.13c |||Rab GTPase binding |Schizosaccharomyces pombe|chr 1|||Manual Length = 225 Score = 119 bits (286), Expect = 5e-28 Identities = 57/145 (39%), Positives = 86/145 (59%) Frame = -1 Query: 718 EWDLWGPVLLCTLMATILQGSAERADNSNDGGPEFAEVFVIVWIGAAVVTINSKLLGGNI 539 +WDLWGP++ ++A L S ++ + + F V ++W G AV ++N KLLG NI Sbjct: 90 DWDLWGPLIFSLVIALALALSTDKIERES----VFTVVVALIWFGEAVCSLNIKLLGANI 145 Query: 538 SFFQSVCVLGYCLFPVALALIICRIILFSAQNTFLFFLRLVISMIGFIWATFAATKFLGD 359 S FQS+C+LGY FP+ +A I+C + L F+R+ + + + W FAA L + Sbjct: 146 SIFQSMCILGYSSFPLMIASIVCAFVP-------LIFIRIPVIVAMYAWTLFAAMGVLQN 198 Query: 358 SQPEGKKALAVYPICLFYFILSWLV 284 S KK LAVYP+ LFYF L+W++ Sbjct: 199 SNLSNKKLLAVYPLFLFYFSLAWII 223 >SPCC61.04c |||Rab GTPase binding|Schizosaccharomyces pombe|chr 3|||Manual Length = 227 Score = 57.6 bits (133), Expect = 2e-09 Identities = 43/146 (29%), Positives = 68/146 (46%), Gaps = 2/146 (1%) Frame = -1 Query: 712 DLWGPVLLCTLMATILQGSAERADNSNDGGPEFAEVFVIVWIGAAVVTINSKLLGG-NIS 536 D+ GP+L C L +T L S G F ++ I +G+ + +L+ N+ Sbjct: 94 DMAGPILFCLLFSTFL---------SLHGRSHFGYIYGIALLGSLSLHFVLRLMSAKNLF 144 Query: 535 FFQSVCVLGYCLFPVALALIICRIILFSAQNTFLFFLRLVISMIGFIWATFAATK-FLGD 359 F ++V VLGY L P+ + I F TF ++ + IW T+AA+ F+G Sbjct: 145 FTRTVSVLGYSLLPLVV------IAFFKNIFTFNGIAGYALAALACIWCTYAASAMFVGI 198 Query: 358 SQPEGKKALAVYPICLFYFILSWLVV 281 Q + L YPI LFY + + + V Sbjct: 199 LQVNNMRFLVAYPIALFYGVFAVITV 224 >SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schizosaccharomyces pombe|chr 1|||Manual Length = 1273 Score = 27.1 bits (57), Expect = 2.7 Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 3/52 (5%) Frame = +3 Query: 546 PPSSLELIVTTAA---PIQTITNTSANSGPPSLELSALSAEPWRIVAIRVQR 692 PP++ +V+ A P+ + TS N P+L S L A P VAI R Sbjct: 310 PPTTAPAVVSPPASSFPLMSSAATSGNISSPALFDSELGARPEGSVAIEPSR 361 >SPBC32H8.08c |||mannosyltransferase complex subunit |Schizosaccharomyces pombe|chr 2|||Manual Length = 438 Score = 26.6 bits (56), Expect = 3.6 Identities = 12/30 (40%), Positives = 18/30 (60%) Frame = -1 Query: 487 LALIICRIILFSAQNTFLFFLRLVISMIGF 398 + L+IC+ +LF T LF + SM+GF Sbjct: 30 IKLLICKFLLFHDFGTALFTSLVKASMLGF 59 >SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces pombe|chr 3|||Manual Length = 967 Score = 26.2 bits (55), Expect = 4.7 Identities = 10/23 (43%), Positives = 19/23 (82%), Gaps = 1/23 (4%) Frame = -3 Query: 482 AHHLPHH-TVQCAEHLPILPEAS 417 A ++PH+ + + ++HLP+LP+AS Sbjct: 243 ATYIPHNPSKKSSQHLPLLPDAS 265 >SPAC29B12.05c |||mitochondrial S-adenosylmethionine-dependent methyltransferase |Schizosaccharomyces pombe|chr 1|||Manual Length = 309 Score = 25.8 bits (54), Expect = 6.2 Identities = 7/14 (50%), Positives = 13/14 (92%) Frame = +1 Query: 343 SLQVDCHQGILLPR 384 ++++DC QG+L+PR Sbjct: 82 NIKIDCQQGVLIPR 95 >SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyces pombe|chr 2|||Manual Length = 1428 Score = 25.4 bits (53), Expect = 8.2 Identities = 10/42 (23%), Positives = 21/42 (50%) Frame = -1 Query: 400 FIWATFAATKFLGDSQPEGKKALAVYPICLFYFILSWLVVSH 275 ++W TF + K +G + E A + PI ++W++ + Sbjct: 155 YLWTTFLSLKGMGFEESEIFGAFSSIPIVSIDEYITWMITEN 196 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,866,364 Number of Sequences: 5004 Number of extensions: 56463 Number of successful extensions: 141 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 131 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 138 length of database: 2,362,478 effective HSP length: 71 effective length of database: 2,007,194 effective search space used: 337208592 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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