Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV12b08r
(721 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1467 + 37570289-37570771,37571818-37571892,37572006-37572266 96 2e-20
05_04_0443 - 21283680-21283940,21284044-21284118,21284620-212846... 93 3e-19
05_03_0316 + 12242823-12242964,12243032-12243282,12243370-122435... 31 0.92
11_04_0122 + 13689847-13690704 29 2.8
07_03_0836 - 21856808-21858451,21858600-21859487,21860019-21860048 29 3.7
12_01_0428 + 3374519-3375423,3376663-3376742,3377206-3377217,337... 28 8.6
07_01_0703 - 5295561-5297523,5299344-5299462 28 8.6
04_03_0103 + 11288977-11290353,11291962-11292075,11294987-112954... 28 8.6
03_06_0680 - 35497868-35497884,35498058-35501961 28 8.6
>01_06_1467 + 37570289-37570771,37571818-37571892,37572006-37572266
Length = 272
Score = 96.3 bits (229), Expect = 2e-20
Identities = 49/147 (33%), Positives = 82/147 (55%)
Frame = -1
Query: 718 EWDLWGPVLLCTLMATILQGSAERADNSNDGGPEFAEVFVIVWIGAAVVTINSKLLGGNI 539
+WDLWGP + L SA S FA F ++ GA ++T+N LLGG+I
Sbjct: 136 DWDLWGPFFFIVFLGLTLSWSA-----SVKKSEVFAVAFAVLAAGAIILTLNVLLLGGHI 190
Query: 538 SFFQSVCVLGYCLFPVALALIICRIILFSAQNTFLFFLRLVISMIGFIWATFAATKFLGD 359
FFQS+ +LGYCLFP+ + ++C + N L++++ + W+++AA F+
Sbjct: 191 IFFQSLSLLGYCLFPLDVGALVCML----KDNV---ILKIIVVTVTLAWSSWAAYPFMSA 243
Query: 358 SQPEGKKALAVYPICLFYFILSWLVVS 278
+ +KALA+YP+ L Y + +L+++
Sbjct: 244 AVNPRRKALALYPVFLMYISVGFLIIA 270
>05_04_0443 -
21283680-21283940,21284044-21284118,21284620-21284649,
21286744-21287247
Length = 289
Score = 92.7 bits (220), Expect = 3e-19
Identities = 50/152 (32%), Positives = 82/152 (53%), Gaps = 5/152 (3%)
Frame = -1
Query: 718 EWDLWGPVLLCTLMATILQGSAE-----RADNSNDGGPEFAEVFVIVWIGAAVVTINSKL 554
+WDLWGP + L SA FA F ++ GA ++T+N L
Sbjct: 143 DWDLWGPFFFIVFLGLTLSWSASVKKIIMFTRFLCKSEVFAVAFAVLAAGAIILTLNVLL 202
Query: 553 LGGNISFFQSVCVLGYCLFPVALALIICRIILFSAQNTFLFFLRLVISMIGFIWATFAAT 374
LGG I+FFQS+ +LGYCLFP+ + +IC + N L + +V+++ W+++AA
Sbjct: 203 LGGRINFFQSLSLLGYCLFPLDVGALICML----KDNVLLKIIAVVVTL---AWSSWAAY 255
Query: 373 KFLGDSQPEGKKALAVYPICLFYFILSWLVVS 278
F+ + +KALA+YP+ L Y + +L+++
Sbjct: 256 PFMSAAVNPRRKALALYPVFLMYVSVGFLIIA 287
>05_03_0316 +
12242823-12242964,12243032-12243282,12243370-12243573,
12243660-12243752,12243828-12243926,12244006-12244308
Length = 363
Score = 31.1 bits (67), Expect = 0.92
Identities = 13/47 (27%), Positives = 24/47 (51%)
Frame = +2
Query: 449 RTEQYDAADDEREGHREQTVAENAHRLEE*NVSTQQFRVDSYNCSPD 589
R+++ D G + Q + N H +EE N++ ++R + Y PD
Sbjct: 4 RSQRLQGLDFSENGVQNQEMVPNDHYVEEQNITNAEWRSNCYEYHPD 50
>11_04_0122 + 13689847-13690704
Length = 285
Score = 29.5 bits (63), Expect = 2.8
Identities = 13/50 (26%), Positives = 25/50 (50%)
Frame = +3
Query: 561 ELIVTTAAPIQTITNTSANSGPPSLELSALSAEPWRIVAIRVQRSTGPHR 710
E++V ++ + +A++ SL+ LS PWR + + GP+R
Sbjct: 192 EVLVARPDDVRKVVRAAASAARRSLKRRRLSVPPWRKRKFMIAKWLGPYR 241
>07_03_0836 - 21856808-21858451,21858600-21859487,21860019-21860048
Length = 853
Score = 29.1 bits (62), Expect = 3.7
Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 8/85 (9%)
Frame = -1
Query: 526 SVCVLGYCLFPVALALIICRIILFSAQN--TFLFFLRLVI---SMIGFI---WATFAATK 371
SV +L Y LFPV + I R I + + T++ +L +VI MIG + WA
Sbjct: 625 SVFLLFYLLFPV---IWIFRGIFYIQKPFPTYVLYLVIVIFMSEMIGMVEIKWAGLTLLD 681
Query: 370 FLGDSQPEGKKALAVYPICLFYFIL 296
++ + Q A AVYP+ + + +L
Sbjct: 682 WIRNEQFYIIGATAVYPLAVLHIVL 706
>12_01_0428 +
3374519-3375423,3376663-3376742,3377206-3377217,
3377337-3377379,3378304-3380332
Length = 1022
Score = 27.9 bits (59), Expect = 8.6
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = -3
Query: 479 HHLPHHTVQCAEHLPILPE 423
+HLPHH C +L I PE
Sbjct: 495 NHLPHHLKACMMYLSIFPE 513
>07_01_0703 - 5295561-5297523,5299344-5299462
Length = 693
Score = 27.9 bits (59), Expect = 8.6
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = -3
Query: 479 HHLPHHTVQCAEHLPILPEASHIHDRIHLGY 387
+HLPHH C +L + PE ++ D+ L Y
Sbjct: 191 NHLPHHLRACMMYLSLFPE-DYVVDKRRLLY 220
>04_03_0103 +
11288977-11290353,11291962-11292075,11294987-11295436,
11295813-11295910,11296023-11296206,11296979-11297068,
11301608-11301727,11301812-11302054,11302715-11302988,
11303237-11303357,11303591-11303849
Length = 1109
Score = 27.9 bits (59), Expect = 8.6
Identities = 13/35 (37%), Positives = 16/35 (45%)
Frame = -3
Query: 473 LPHHTVQCAEHLPILPEASHIHDRIHLGYFRGNKI 369
L H V C E PI+P S D + +F N I
Sbjct: 695 LGFHHVPCQEDFPIMPTVSSSFDLKPVNFFESNPI 729
>03_06_0680 - 35497868-35497884,35498058-35501961
Length = 1306
Score = 27.9 bits (59), Expect = 8.6
Identities = 20/78 (25%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
Frame = +3
Query: 429 KNRKVFCALNSMMRQMMSARATGNKQ*PRTHTDW-KNEMFPPSSLELIVTTAAPIQTITN 605
K+ K+ C ++ +M + A+++ K+ T K+E FP S+ L ++ + I N
Sbjct: 490 KDSKITCKIHDLMHDV--AQSSMGKECAAIATKLSKSEDFPSSARHLFLS-GYRAEAILN 546
Query: 606 TSANSGPPSLELSALSAE 659
TS G P ++ S++
Sbjct: 547 TSLEKGHPGIQTLICSSQ 564
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,428,803
Number of Sequences: 37544
Number of extensions: 371247
Number of successful extensions: 956
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 926
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 952
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1874582652
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -