SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12b08r
         (721 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1467 + 37570289-37570771,37571818-37571892,37572006-37572266     96   2e-20
05_04_0443 - 21283680-21283940,21284044-21284118,21284620-212846...    93   3e-19
05_03_0316 + 12242823-12242964,12243032-12243282,12243370-122435...    31   0.92 
11_04_0122 + 13689847-13690704                                         29   2.8  
07_03_0836 - 21856808-21858451,21858600-21859487,21860019-21860048     29   3.7  
12_01_0428 + 3374519-3375423,3376663-3376742,3377206-3377217,337...    28   8.6  
07_01_0703 - 5295561-5297523,5299344-5299462                           28   8.6  
04_03_0103 + 11288977-11290353,11291962-11292075,11294987-112954...    28   8.6  
03_06_0680 - 35497868-35497884,35498058-35501961                       28   8.6  

>01_06_1467 + 37570289-37570771,37571818-37571892,37572006-37572266
          Length = 272

 Score = 96.3 bits (229), Expect = 2e-20
 Identities = 49/147 (33%), Positives = 82/147 (55%)
 Frame = -1

Query: 718 EWDLWGPVLLCTLMATILQGSAERADNSNDGGPEFAEVFVIVWIGAAVVTINSKLLGGNI 539
           +WDLWGP      +   L  SA     S      FA  F ++  GA ++T+N  LLGG+I
Sbjct: 136 DWDLWGPFFFIVFLGLTLSWSA-----SVKKSEVFAVAFAVLAAGAIILTLNVLLLGGHI 190

Query: 538 SFFQSVCVLGYCLFPVALALIICRIILFSAQNTFLFFLRLVISMIGFIWATFAATKFLGD 359
            FFQS+ +LGYCLFP+ +  ++C +      N     L++++  +   W+++AA  F+  
Sbjct: 191 IFFQSLSLLGYCLFPLDVGALVCML----KDNV---ILKIIVVTVTLAWSSWAAYPFMSA 243

Query: 358 SQPEGKKALAVYPICLFYFILSWLVVS 278
           +    +KALA+YP+ L Y  + +L+++
Sbjct: 244 AVNPRRKALALYPVFLMYISVGFLIIA 270


>05_04_0443 -
           21283680-21283940,21284044-21284118,21284620-21284649,
           21286744-21287247
          Length = 289

 Score = 92.7 bits (220), Expect = 3e-19
 Identities = 50/152 (32%), Positives = 82/152 (53%), Gaps = 5/152 (3%)
 Frame = -1

Query: 718 EWDLWGPVLLCTLMATILQGSAE-----RADNSNDGGPEFAEVFVIVWIGAAVVTINSKL 554
           +WDLWGP      +   L  SA                 FA  F ++  GA ++T+N  L
Sbjct: 143 DWDLWGPFFFIVFLGLTLSWSASVKKIIMFTRFLCKSEVFAVAFAVLAAGAIILTLNVLL 202

Query: 553 LGGNISFFQSVCVLGYCLFPVALALIICRIILFSAQNTFLFFLRLVISMIGFIWATFAAT 374
           LGG I+FFQS+ +LGYCLFP+ +  +IC +      N  L  + +V+++    W+++AA 
Sbjct: 203 LGGRINFFQSLSLLGYCLFPLDVGALICML----KDNVLLKIIAVVVTL---AWSSWAAY 255

Query: 373 KFLGDSQPEGKKALAVYPICLFYFILSWLVVS 278
            F+  +    +KALA+YP+ L Y  + +L+++
Sbjct: 256 PFMSAAVNPRRKALALYPVFLMYVSVGFLIIA 287


>05_03_0316 +
           12242823-12242964,12243032-12243282,12243370-12243573,
           12243660-12243752,12243828-12243926,12244006-12244308
          Length = 363

 Score = 31.1 bits (67), Expect = 0.92
 Identities = 13/47 (27%), Positives = 24/47 (51%)
 Frame = +2

Query: 449 RTEQYDAADDEREGHREQTVAENAHRLEE*NVSTQQFRVDSYNCSPD 589
           R+++    D    G + Q +  N H +EE N++  ++R + Y   PD
Sbjct: 4   RSQRLQGLDFSENGVQNQEMVPNDHYVEEQNITNAEWRSNCYEYHPD 50


>11_04_0122 + 13689847-13690704
          Length = 285

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 13/50 (26%), Positives = 25/50 (50%)
 Frame = +3

Query: 561 ELIVTTAAPIQTITNTSANSGPPSLELSALSAEPWRIVAIRVQRSTGPHR 710
           E++V     ++ +   +A++   SL+   LS  PWR     + +  GP+R
Sbjct: 192 EVLVARPDDVRKVVRAAASAARRSLKRRRLSVPPWRKRKFMIAKWLGPYR 241


>07_03_0836 - 21856808-21858451,21858600-21859487,21860019-21860048
          Length = 853

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 8/85 (9%)
 Frame = -1

Query: 526 SVCVLGYCLFPVALALIICRIILFSAQN--TFLFFLRLVI---SMIGFI---WATFAATK 371
           SV +L Y LFPV   + I R I +  +   T++ +L +VI    MIG +   WA      
Sbjct: 625 SVFLLFYLLFPV---IWIFRGIFYIQKPFPTYVLYLVIVIFMSEMIGMVEIKWAGLTLLD 681

Query: 370 FLGDSQPEGKKALAVYPICLFYFIL 296
           ++ + Q     A AVYP+ + + +L
Sbjct: 682 WIRNEQFYIIGATAVYPLAVLHIVL 706


>12_01_0428 +
           3374519-3375423,3376663-3376742,3377206-3377217,
           3377337-3377379,3378304-3380332
          Length = 1022

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -3

Query: 479 HHLPHHTVQCAEHLPILPE 423
           +HLPHH   C  +L I PE
Sbjct: 495 NHLPHHLKACMMYLSIFPE 513


>07_01_0703 - 5295561-5297523,5299344-5299462
          Length = 693

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -3

Query: 479 HHLPHHTVQCAEHLPILPEASHIHDRIHLGY 387
           +HLPHH   C  +L + PE  ++ D+  L Y
Sbjct: 191 NHLPHHLRACMMYLSLFPE-DYVVDKRRLLY 220


>04_03_0103 +
           11288977-11290353,11291962-11292075,11294987-11295436,
           11295813-11295910,11296023-11296206,11296979-11297068,
           11301608-11301727,11301812-11302054,11302715-11302988,
           11303237-11303357,11303591-11303849
          Length = 1109

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = -3

Query: 473 LPHHTVQCAEHLPILPEASHIHDRIHLGYFRGNKI 369
           L  H V C E  PI+P  S   D   + +F  N I
Sbjct: 695 LGFHHVPCQEDFPIMPTVSSSFDLKPVNFFESNPI 729


>03_06_0680 - 35497868-35497884,35498058-35501961
          Length = 1306

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 20/78 (25%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
 Frame = +3

Query: 429 KNRKVFCALNSMMRQMMSARATGNKQ*PRTHTDW-KNEMFPPSSLELIVTTAAPIQTITN 605
           K+ K+ C ++ +M  +  A+++  K+     T   K+E FP S+  L ++     + I N
Sbjct: 490 KDSKITCKIHDLMHDV--AQSSMGKECAAIATKLSKSEDFPSSARHLFLS-GYRAEAILN 546

Query: 606 TSANSGPPSLELSALSAE 659
           TS   G P ++    S++
Sbjct: 547 TSLEKGHPGIQTLICSSQ 564


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,428,803
Number of Sequences: 37544
Number of extensions: 371247
Number of successful extensions: 956
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 926
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 952
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1874582652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -