BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fmgV12b08r (721 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 01_06_1467 + 37570289-37570771,37571818-37571892,37572006-37572266 96 2e-20 05_04_0443 - 21283680-21283940,21284044-21284118,21284620-212846... 93 3e-19 05_03_0316 + 12242823-12242964,12243032-12243282,12243370-122435... 31 0.92 11_04_0122 + 13689847-13690704 29 2.8 07_03_0836 - 21856808-21858451,21858600-21859487,21860019-21860048 29 3.7 12_01_0428 + 3374519-3375423,3376663-3376742,3377206-3377217,337... 28 8.6 07_01_0703 - 5295561-5297523,5299344-5299462 28 8.6 04_03_0103 + 11288977-11290353,11291962-11292075,11294987-112954... 28 8.6 03_06_0680 - 35497868-35497884,35498058-35501961 28 8.6 >01_06_1467 + 37570289-37570771,37571818-37571892,37572006-37572266 Length = 272 Score = 96.3 bits (229), Expect = 2e-20 Identities = 49/147 (33%), Positives = 82/147 (55%) Frame = -1 Query: 718 EWDLWGPVLLCTLMATILQGSAERADNSNDGGPEFAEVFVIVWIGAAVVTINSKLLGGNI 539 +WDLWGP + L SA S FA F ++ GA ++T+N LLGG+I Sbjct: 136 DWDLWGPFFFIVFLGLTLSWSA-----SVKKSEVFAVAFAVLAAGAIILTLNVLLLGGHI 190 Query: 538 SFFQSVCVLGYCLFPVALALIICRIILFSAQNTFLFFLRLVISMIGFIWATFAATKFLGD 359 FFQS+ +LGYCLFP+ + ++C + N L++++ + W+++AA F+ Sbjct: 191 IFFQSLSLLGYCLFPLDVGALVCML----KDNV---ILKIIVVTVTLAWSSWAAYPFMSA 243 Query: 358 SQPEGKKALAVYPICLFYFILSWLVVS 278 + +KALA+YP+ L Y + +L+++ Sbjct: 244 AVNPRRKALALYPVFLMYISVGFLIIA 270 >05_04_0443 - 21283680-21283940,21284044-21284118,21284620-21284649, 21286744-21287247 Length = 289 Score = 92.7 bits (220), Expect = 3e-19 Identities = 50/152 (32%), Positives = 82/152 (53%), Gaps = 5/152 (3%) Frame = -1 Query: 718 EWDLWGPVLLCTLMATILQGSAE-----RADNSNDGGPEFAEVFVIVWIGAAVVTINSKL 554 +WDLWGP + L SA FA F ++ GA ++T+N L Sbjct: 143 DWDLWGPFFFIVFLGLTLSWSASVKKIIMFTRFLCKSEVFAVAFAVLAAGAIILTLNVLL 202 Query: 553 LGGNISFFQSVCVLGYCLFPVALALIICRIILFSAQNTFLFFLRLVISMIGFIWATFAAT 374 LGG I+FFQS+ +LGYCLFP+ + +IC + N L + +V+++ W+++AA Sbjct: 203 LGGRINFFQSLSLLGYCLFPLDVGALICML----KDNVLLKIIAVVVTL---AWSSWAAY 255 Query: 373 KFLGDSQPEGKKALAVYPICLFYFILSWLVVS 278 F+ + +KALA+YP+ L Y + +L+++ Sbjct: 256 PFMSAAVNPRRKALALYPVFLMYVSVGFLIIA 287 >05_03_0316 + 12242823-12242964,12243032-12243282,12243370-12243573, 12243660-12243752,12243828-12243926,12244006-12244308 Length = 363 Score = 31.1 bits (67), Expect = 0.92 Identities = 13/47 (27%), Positives = 24/47 (51%) Frame = +2 Query: 449 RTEQYDAADDEREGHREQTVAENAHRLEE*NVSTQQFRVDSYNCSPD 589 R+++ D G + Q + N H +EE N++ ++R + Y PD Sbjct: 4 RSQRLQGLDFSENGVQNQEMVPNDHYVEEQNITNAEWRSNCYEYHPD 50 >11_04_0122 + 13689847-13690704 Length = 285 Score = 29.5 bits (63), Expect = 2.8 Identities = 13/50 (26%), Positives = 25/50 (50%) Frame = +3 Query: 561 ELIVTTAAPIQTITNTSANSGPPSLELSALSAEPWRIVAIRVQRSTGPHR 710 E++V ++ + +A++ SL+ LS PWR + + GP+R Sbjct: 192 EVLVARPDDVRKVVRAAASAARRSLKRRRLSVPPWRKRKFMIAKWLGPYR 241 >07_03_0836 - 21856808-21858451,21858600-21859487,21860019-21860048 Length = 853 Score = 29.1 bits (62), Expect = 3.7 Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 8/85 (9%) Frame = -1 Query: 526 SVCVLGYCLFPVALALIICRIILFSAQN--TFLFFLRLVI---SMIGFI---WATFAATK 371 SV +L Y LFPV + I R I + + T++ +L +VI MIG + WA Sbjct: 625 SVFLLFYLLFPV---IWIFRGIFYIQKPFPTYVLYLVIVIFMSEMIGMVEIKWAGLTLLD 681 Query: 370 FLGDSQPEGKKALAVYPICLFYFIL 296 ++ + Q A AVYP+ + + +L Sbjct: 682 WIRNEQFYIIGATAVYPLAVLHIVL 706 >12_01_0428 + 3374519-3375423,3376663-3376742,3377206-3377217, 3377337-3377379,3378304-3380332 Length = 1022 Score = 27.9 bits (59), Expect = 8.6 Identities = 10/19 (52%), Positives = 12/19 (63%) Frame = -3 Query: 479 HHLPHHTVQCAEHLPILPE 423 +HLPHH C +L I PE Sbjct: 495 NHLPHHLKACMMYLSIFPE 513 >07_01_0703 - 5295561-5297523,5299344-5299462 Length = 693 Score = 27.9 bits (59), Expect = 8.6 Identities = 12/31 (38%), Positives = 18/31 (58%) Frame = -3 Query: 479 HHLPHHTVQCAEHLPILPEASHIHDRIHLGY 387 +HLPHH C +L + PE ++ D+ L Y Sbjct: 191 NHLPHHLRACMMYLSLFPE-DYVVDKRRLLY 220 >04_03_0103 + 11288977-11290353,11291962-11292075,11294987-11295436, 11295813-11295910,11296023-11296206,11296979-11297068, 11301608-11301727,11301812-11302054,11302715-11302988, 11303237-11303357,11303591-11303849 Length = 1109 Score = 27.9 bits (59), Expect = 8.6 Identities = 13/35 (37%), Positives = 16/35 (45%) Frame = -3 Query: 473 LPHHTVQCAEHLPILPEASHIHDRIHLGYFRGNKI 369 L H V C E PI+P S D + +F N I Sbjct: 695 LGFHHVPCQEDFPIMPTVSSSFDLKPVNFFESNPI 729 >03_06_0680 - 35497868-35497884,35498058-35501961 Length = 1306 Score = 27.9 bits (59), Expect = 8.6 Identities = 20/78 (25%), Positives = 39/78 (50%), Gaps = 1/78 (1%) Frame = +3 Query: 429 KNRKVFCALNSMMRQMMSARATGNKQ*PRTHTDW-KNEMFPPSSLELIVTTAAPIQTITN 605 K+ K+ C ++ +M + A+++ K+ T K+E FP S+ L ++ + I N Sbjct: 490 KDSKITCKIHDLMHDV--AQSSMGKECAAIATKLSKSEDFPSSARHLFLS-GYRAEAILN 546 Query: 606 TSANSGPPSLELSALSAE 659 TS G P ++ S++ Sbjct: 547 TSLEKGHPGIQTLICSSQ 564 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 18,428,803 Number of Sequences: 37544 Number of extensions: 371247 Number of successful extensions: 956 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 926 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 952 length of database: 14,793,348 effective HSP length: 80 effective length of database: 11,789,828 effective search space used: 1874582652 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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