Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV12b08r
(721 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_51398| Best HMM Match : zf-Tim10_DDP (HMM E-Value=2.7e-28) 72 5e-13
SB_14318| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.019
SB_27135| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.54
SB_53774| Best HMM Match : efhand (HMM E-Value=0.012) 31 1.2
SB_34910| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.6
SB_34803| Best HMM Match : Pox_A32 (HMM E-Value=3.7) 29 2.9
SB_56500| Best HMM Match : Tctex-1 (HMM E-Value=0.0079) 29 3.8
SB_41940| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.0
SB_54545| Best HMM Match : TIP49 (HMM E-Value=4.3) 29 5.0
>SB_51398| Best HMM Match : zf-Tim10_DDP (HMM E-Value=2.7e-28)
Length = 143
Score = 71.7 bits (168), Expect = 5e-13
Identities = 30/53 (56%), Positives = 39/53 (73%)
Frame = -1
Query: 538 SFFQSVCVLGYCLFPVALALIICRIILFSAQNTFLFFLRLVISMIGFIWATFA 380
SFFQSVCVLGYC+ P+ ++L +CR+IL + QN LF R V+ + GF WAT A
Sbjct: 2 SFFQSVCVLGYCILPLDISLTVCRLILLAKQNLALFIARFVVVLGGFAWATVA 54
>SB_14318| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 341
Score = 36.7 bits (81), Expect = 0.019
Identities = 39/146 (26%), Positives = 62/146 (42%), Gaps = 2/146 (1%)
Frame = -1
Query: 712 DLWGPVLLCTLMATILQGSAERADNSNDGGPEFAEVFVIVWIGA-AVVTINSKLLGGNIS 536
DL GP+L C IL G F ++ +G A+ I + + ++S
Sbjct: 210 DLGGPLLFCLAFGGILL---------LHGKVTFGYIYGYSLLGCIAMYAILNLMSLADVS 260
Query: 535 FFQSVCVLGYCLFPVALALIICRIILFSAQNTFLFFLRLVISMIGFIWATFAATK-FLGD 359
F V VLGYCL P+ I I+ S Q L V++ + W + ++K F+
Sbjct: 261 FSTVVSVLGYCLLPMVGLSAIALIV--SLQGA----LGSVLTAVTIGWCSLVSSKLFVIA 314
Query: 358 SQPEGKKALAVYPICLFYFILSWLVV 281
+ ++ L YP L Y + + L V
Sbjct: 315 LGMDHQQPLVAYPCALLYGVFALLTV 340
>SB_27135| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 222
Score = 31.9 bits (69), Expect = 0.54
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Frame = -1
Query: 466 IILFSAQNTFLFFLRLVIS--MIGFIWATFAATKFLGDSQPEGKKALAVYPICLFY 305
I ++ + +F L V+ IG +WA+++A L K+ L +YPI L Y
Sbjct: 157 ITIWVLGSLIVFLLARVLGGEAIGVVWASYSAGSLLIHEDLRSKRPLLLYPILLLY 212
>SB_53774| Best HMM Match : efhand (HMM E-Value=0.012)
Length = 918
Score = 30.7 bits (66), Expect = 1.2
Identities = 15/50 (30%), Positives = 24/50 (48%)
Frame = -3
Query: 689 LHSYGHYPPGLCRKS*QLQRRRTRVC*SICDSLDRGCSCNYQL*TAGWKH 540
+ SYG P R S + + R C ++CD ++ + N + T WKH
Sbjct: 153 VRSYGSTPCDRVRPSAIIWKHTMRSCATVCDHMEAHLAINVRPCTVIWKH 202
>SB_34910| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2147
Score = 30.3 bits (65), Expect = 1.6
Identities = 24/99 (24%), Positives = 43/99 (43%)
Frame = +3
Query: 366 RNFVAAKVAQMNPIMDMTSLRKNRKVFCALNSMMRQMMSARATGNKQ*PRTHTDWKNEMF 545
R+ Q +P +TS+ + + S ++ S++ T Q R+
Sbjct: 1068 RSSQVTSATQESPSSQVTSVTQESPS-SQVTSATQESRSSQVTSATQESRSSQVTSATQE 1126
Query: 546 PPSSLELIVTTAAPIQTITNTSANSGPPSLELSALSAEP 662
PPS+ VT P +T SA PPS ++++++ EP
Sbjct: 1127 PPSTQVTSVTHEPPSSQVT--SATQEPPSSQVTSVTQEP 1163
>SB_34803| Best HMM Match : Pox_A32 (HMM E-Value=3.7)
Length = 354
Score = 29.5 bits (63), Expect = 2.9
Identities = 13/29 (44%), Positives = 20/29 (68%)
Frame = +3
Query: 564 LIVTTAAPIQTITNTSANSGPPSLELSAL 650
+I+TT+A I TNT+ +S P +L LS +
Sbjct: 288 IIITTSAAIPATTNTTQHSSPITLPLSII 316
>SB_56500| Best HMM Match : Tctex-1 (HMM E-Value=0.0079)
Length = 502
Score = 29.1 bits (62), Expect = 3.8
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 4/35 (11%)
Frame = -3
Query: 497 PGGPRAH-HLPHHTV---QCAEHLPILPEASHIHD 405
P PR H H+P++ + +C EH+P P +S D
Sbjct: 159 PSSPRYHEHIPNYPLSSPRCHEHIPNYPSSSEAED 193
>SB_41940| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 270
Score = 28.7 bits (61), Expect = 5.0
Identities = 28/102 (27%), Positives = 53/102 (51%), Gaps = 8/102 (7%)
Frame = -1
Query: 568 INSKLLGGNISFFQSVCVLGYCLFPVALALIICRIILFSA-----QNTFLFFLRLVISMI 404
++SKL + F+++ V+ L VA+ L++ I +A +NTF+F V+ +I
Sbjct: 67 LHSKLNDQSSKAFETISVI--TLHAVAINLVVIAINRMNAIANPFKNTFIFSKAKVLMLI 124
Query: 403 GFIW-ATFAATKFLGDSQPEGKKALAVYP--ICLFYFILSWL 287
+W FL ++Q EG KA + Y + + F+L+++
Sbjct: 125 SCVWIGAILMAVFLLETQ-EG-KAFSPYSHLLLILTFLLAYV 164
>SB_54545| Best HMM Match : TIP49 (HMM E-Value=4.3)
Length = 516
Score = 28.7 bits (61), Expect = 5.0
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +1
Query: 16 LFILNVFIGMFCCASNFRV 72
+F+L V FCCASNFR+
Sbjct: 108 MFLLTVERTRFCCASNFRI 126
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,413,482
Number of Sequences: 59808
Number of extensions: 434929
Number of successful extensions: 1080
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 984
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1079
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1913853903
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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