Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV12b08r
(721 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81137-10|CAB03470.2| 232|Caenorhabditis elegans Hypothetical p... 161 5e-40
AL117207-21|CAN99696.1| 255|Caenorhabditis elegans Hypothetical... 55 6e-08
AL117207-20|CAB60403.3| 228|Caenorhabditis elegans Hypothetical... 55 6e-08
Z74031-15|CAE45046.1| 261|Caenorhabditis elegans Hypothetical p... 50 2e-06
U28737-8|ABA61869.1| 537|Caenorhabditis elegans Hypothetical pr... 31 1.1
U28737-7|ABA61870.1| 501|Caenorhabditis elegans Hypothetical pr... 31 1.1
Z54342-11|CAA91146.1| 502|Caenorhabditis elegans Hypothetical p... 30 1.9
Z67990-4|CAA91935.1| 369|Caenorhabditis elegans Hypothetical pr... 29 2.5
AF016685-7|AAG24151.1| 341|Caenorhabditis elegans Seven tm rece... 28 5.8
Z78417-10|CAB01688.2| 745|Caenorhabditis elegans Hypothetical p... 28 7.7
AF016415-4|AAW88419.1| 298|Caenorhabditis elegans Serpentine re... 28 7.7
>Z81137-10|CAB03470.2| 232|Caenorhabditis elegans Hypothetical
protein W02D9.2 protein.
Length = 232
Score = 161 bits (391), Expect = 5e-40
Identities = 69/149 (46%), Positives = 103/149 (69%)
Frame = -1
Query: 718 EWDLWGPVLLCTLMATILQGSAERADNSNDGGPEFAEVFVIVWIGAAVVTINSKLLGGNI 539
+WDLWGP+ +C +A +LQ + + P+F +VF I + G+ +VT N KLLGGNI
Sbjct: 93 DWDLWGPLFICVGLALLLQHNG-----GTESAPQFTQVFTITFFGSVIVTANIKLLGGNI 147
Query: 538 SFFQSVCVLGYCLFPVALALIICRIILFSAQNTFLFFLRLVISMIGFIWATFAATKFLGD 359
SFFQS+CV+GYCL P +A ++C + L + F LRL+I+ IGF+W+T+A+ FL
Sbjct: 148 SFFQSLCVIGYCLLPPFVAAVLCSLFL----HGIAFPLRLLITSIGFVWSTYASMGFLAG 203
Query: 358 SQPEGKKALAVYPICLFYFILSWLVVSHS 272
QP+ K+ L +YP+ LFYF++SW+++SHS
Sbjct: 204 CQPDKKRLLVIYPVFLFYFVVSWMIISHS 232
>AL117207-21|CAN99696.1| 255|Caenorhabditis elegans Hypothetical
protein Y60A3A.19b protein.
Length = 255
Score = 54.8 bits (126), Expect = 6e-08
Identities = 31/100 (31%), Positives = 53/100 (53%), Gaps = 1/100 (1%)
Frame = -1
Query: 601 VIVWI-GAAVVTINSKLLGGNISFFQSVCVLGYCLFPVALALIICRIILFSAQNTFLFFL 425
+ +W G +V ++ LGG++ + Q + ++GYCL P+ + +I LFS+ L
Sbjct: 152 ITIWFCGGFMVYFIARALGGDVGYSQVLGIVGYCLIPLVVTSLITP--LFSS----FRLL 205
Query: 424 RLVISMIGFIWATFAATKFLGDSQPEGKKALAVYPICLFY 305
+ M G IW+ ++A L + + KK L VYP+ L Y
Sbjct: 206 SNGLGMFGTIWSVYSAGTLLCVDELQAKKPLVVYPVFLLY 245
>AL117207-20|CAB60403.3| 228|Caenorhabditis elegans Hypothetical
protein Y60A3A.19a protein.
Length = 228
Score = 54.8 bits (126), Expect = 6e-08
Identities = 31/100 (31%), Positives = 53/100 (53%), Gaps = 1/100 (1%)
Frame = -1
Query: 601 VIVWI-GAAVVTINSKLLGGNISFFQSVCVLGYCLFPVALALIICRIILFSAQNTFLFFL 425
+ +W G +V ++ LGG++ + Q + ++GYCL P+ + +I LFS+ L
Sbjct: 125 ITIWFCGGFMVYFIARALGGDVGYSQVLGIVGYCLIPLVVTSLITP--LFSS----FRLL 178
Query: 424 RLVISMIGFIWATFAATKFLGDSQPEGKKALAVYPICLFY 305
+ M G IW+ ++A L + + KK L VYP+ L Y
Sbjct: 179 SNGLGMFGTIWSVYSAGTLLCVDELQAKKPLVVYPVFLLY 218
>Z74031-15|CAE45046.1| 261|Caenorhabditis elegans Hypothetical
protein F32D8.14 protein.
Length = 261
Score = 50.0 bits (114), Expect = 2e-06
Identities = 40/147 (27%), Positives = 68/147 (46%), Gaps = 3/147 (2%)
Frame = -1
Query: 712 DLWGPVLLCTLM--ATILQGSAERADNSNDGGPEFAEVFVIVWIGAAVVTINSKLLGGNI 539
DL GP++ C L A +L G GG ++ ++ + A + K NI
Sbjct: 128 DLAGPLVFCLLFGAALLLHGKLSFGFIYGVGGLGCVGIYALMNLMAT----DEK----NI 179
Query: 538 SFFQSVCVLGYCLFPVALALIICRIILFSAQNTFLFFLRLVISMIGFIWATFAATK-FLG 362
SF + VLGYCL P+AL I+ ++ F + +IS + +W + A++K F+
Sbjct: 180 SFTCTASVLGYCLLPMALLSIVTAVLSFKG------IIGYIISSLAVLWCSSASSKLFVI 233
Query: 361 DSQPEGKKALAVYPICLFYFILSWLVV 281
+ ++ L YP L Y + + L +
Sbjct: 234 ALSMDHQRLLVAYPCVLLYSVFALLAI 260
>U28737-8|ABA61869.1| 537|Caenorhabditis elegans Hypothetical
protein F14B8.5a protein.
Length = 537
Score = 30.7 bits (66), Expect = 1.1
Identities = 17/47 (36%), Positives = 25/47 (53%)
Frame = -1
Query: 595 VWIGAAVVTINSKLLGGNISFFQSVCVLGYCLFPVALALIICRIILF 455
V+ GA +N +G +F VLG CL +AL LI+C I+ +
Sbjct: 361 VYNGACAAAVNVNNVGVAYAFRTWTIVLG-CLLGIALLLILCLILAY 406
>U28737-7|ABA61870.1| 501|Caenorhabditis elegans Hypothetical
protein F14B8.5b protein.
Length = 501
Score = 30.7 bits (66), Expect = 1.1
Identities = 17/47 (36%), Positives = 25/47 (53%)
Frame = -1
Query: 595 VWIGAAVVTINSKLLGGNISFFQSVCVLGYCLFPVALALIICRIILF 455
V+ GA +N +G +F VLG CL +AL LI+C I+ +
Sbjct: 325 VYNGACAAAVNVNNVGVAYAFRTWTIVLG-CLLGIALLLILCLILAY 370
>Z54342-11|CAA91146.1| 502|Caenorhabditis elegans Hypothetical
protein C08H9.5 protein.
Length = 502
Score = 29.9 bits (64), Expect = 1.9
Identities = 13/23 (56%), Positives = 19/23 (82%)
Frame = -1
Query: 523 VCVLGYCLFPVALALIICRIILF 455
+ +L YCLF VALA++IC +I+F
Sbjct: 76 IFILLYCLF-VALAILICGLIIF 97
>Z67990-4|CAA91935.1| 369|Caenorhabditis elegans Hypothetical
protein F02D10.4 protein.
Length = 369
Score = 29.5 bits (63), Expect = 2.5
Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 5/63 (7%)
Frame = +2
Query: 413 YD*PQEE*EGVLRTEQYDAAD-DEREGHREQT----VAENAHRLEE*NVSTQQFRVDSYN 577
YD P + G TEQYD D + H Q V+EN R E +++ + + D
Sbjct: 97 YDTPGRQENGGRYTEQYDTVDQSSKREHLSQRYGDHVSENNSRTEYKSINNGESKTDRDC 156
Query: 578 CSP 586
C P
Sbjct: 157 CGP 159
>AF016685-7|AAG24151.1| 341|Caenorhabditis elegans Seven tm
receptor protein 86 protein.
Length = 341
Score = 28.3 bits (60), Expect = 5.8
Identities = 28/104 (26%), Positives = 45/104 (43%), Gaps = 5/104 (4%)
Frame = -1
Query: 571 TINSKLLGGNISFFQSVCVLGYCLFPVALALIICRIILFSAQNTFLFFLRLVISMIGFIW 392
TI + LG ++ F + + F + R ++FS T + + VIS++ +
Sbjct: 5 TIRCEQLGVVVALFSNTMLFYLLTFKANTSYGAYRRLMFSY--TIVELMYSVISVMSGMM 62
Query: 391 ATFAATKFLGDSQPEGKKALAVYPI-----CLFYFILSWLVVSH 275
A T F+ EG + + PI C FYF L L+V H
Sbjct: 63 AHSTETSFVVFDLYEGYVSRYLAPIFLIDFCAFYFTLILLLVVH 106
>Z78417-10|CAB01688.2| 745|Caenorhabditis elegans Hypothetical
protein C35C5.2 protein.
Length = 745
Score = 27.9 bits (59), Expect = 7.7
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = -1
Query: 628 GGPEFAEVFVIVWIGAAVVTINSKLLGGN 542
G EFAE + + + AV IN L+GGN
Sbjct: 415 GSTEFAEEYRLQLMRRAVAVINMDLIGGN 443
>AF016415-4|AAW88419.1| 298|Caenorhabditis elegans Serpentine
receptor, class bc (class b-like) protein 31 protein.
Length = 298
Score = 27.9 bits (59), Expect = 7.7
Identities = 15/58 (25%), Positives = 31/58 (53%)
Frame = -1
Query: 499 FPVALALIICRIILFSAQNTFLFFLRLVISMIGFIWATFAATKFLGDSQPEGKKALAV 326
F +AL I I++FS ++ F+ R +++ +G W+ A+ + + ++A AV
Sbjct: 54 FGLALLSYISFILIFSEKSEFMIEHRNLLTYLGLFWSNTASCRSILALAIAAERATAV 111
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,142,978
Number of Sequences: 27780
Number of extensions: 336834
Number of successful extensions: 1067
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1002
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1063
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1687292480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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