Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12b08r
         (721 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g18840.1 68415.m02194 integral membrane Yip1 family protein c...    98   6e-21
At4g30260.1 68417.m04302 integral membrane Yip1 family protein c...    97   1e-20
At2g36300.1 68415.m04455 integral membrane Yip1 family protein c...    37   0.015
At3g52760.1 68416.m05813 integral membrane Yip1 family protein c...    32   0.33 
At4g27720.1 68417.m03984 expressed protein contains Pfam PF05631...    29   4.1  
At4g22550.1 68417.m03255 phosphatidic acid phosphatase-related /...    28   5.4  
At3g16340.1 68416.m02066 ABC transporter family protein similar ...    28   5.4  
At1g10470.1 68414.m01179 two-component responsive regulator / re...    28   7.2  

>At2g18840.1 68415.m02194 integral membrane Yip1 family protein
           contains Pfam domain, PF04893: Yip1 domain
          Length = 281

 Score = 97.9 bits (233), Expect = 6e-21
 Identities = 51/147 (34%), Positives = 82/147 (55%)
 Frame = -1

Query: 718 EWDLWGPVLLCTLMATILQGSAERADNSNDGGPEFAEVFVIVWIGAAVVTINSKLLGGNI 539
           +WDLWGP      +   L  SA     S      FA  F ++  GA ++T+N  LLGG+I
Sbjct: 145 DWDLWGPFFFIVFLGLTLSWSA-----SVKKSEVFAVAFALLAAGAVILTLNVLLLGGHI 199

Query: 538 SFFQSVCVLGYCLFPVALALIICRIILFSAQNTFLFFLRLVISMIGFIWATFAATKFLGD 359
            FFQS+ +LGYCLFP+ +  +IC +      N     L++V+  +   W+++AA  F+  
Sbjct: 200 IFFQSLSLLGYCLFPLDVGAVICML----KDNV---ILKMVVVSVTLAWSSWAAYPFMSS 252

Query: 358 SQPEGKKALAVYPICLFYFILSWLVVS 278
           +    +KALA+YP+ L Y  + +L+++
Sbjct: 253 AVNPRRKALALYPVFLMYVSVGFLIIA 279


>At4g30260.1 68417.m04302 integral membrane Yip1 family protein
           contains Pfam domain, PF04893: Yip1 domain
          Length = 280

 Score = 97.1 bits (231), Expect = 1e-20
 Identities = 51/147 (34%), Positives = 82/147 (55%)
 Frame = -1

Query: 718 EWDLWGPVLLCTLMATILQGSAERADNSNDGGPEFAEVFVIVWIGAAVVTINSKLLGGNI 539
           +WDLWGP      +   L  SA     S      FA  F ++  GA ++T+N  LLGG+I
Sbjct: 144 DWDLWGPFFFIVFLGLTLSWSA-----SVKKSEVFAVAFALLAAGAVILTLNVLLLGGHI 198

Query: 538 SFFQSVCVLGYCLFPVALALIICRIILFSAQNTFLFFLRLVISMIGFIWATFAATKFLGD 359
            FFQS+ +LGYCLFP+ +  +IC +      N     L++V+  +   W+++AA  F+  
Sbjct: 199 IFFQSLSLLGYCLFPLDVGAVICML----KDNV---ILKMVVVSVTLAWSSWAAYPFMSA 251

Query: 358 SQPEGKKALAVYPICLFYFILSWLVVS 278
           +    +KALA+YP+ L Y  + +L+++
Sbjct: 252 AVNPRRKALALYPVFLMYVSVGFLIIA 278


>At2g36300.1 68415.m04455 integral membrane Yip1 family protein
           contains Pfam domain, PF04893: Yip1 domain
          Length = 255

 Score = 36.7 bits (81), Expect = 0.015
 Identities = 24/91 (26%), Positives = 44/91 (48%), Gaps = 2/91 (2%)
 Frame = -1

Query: 547 GNISFFQSVCVLGYCLFPVALALIICRIILFSAQNTFLFFLRLVISMIGFIWATFAATKF 368
           GN++      ++GYCL PV   +++  + LF  Q      +R V++ +  +W+T A +  
Sbjct: 169 GNLNLHTCTSLVGYCLLPV---VVLSAVSLFVPQGAGP--VRFVLAALFVLWSTRACSTL 223

Query: 367 LGDSQPEGK--KALAVYPICLFYFILSWLVV 281
           +      G+  + L  Y   L Y + S LV+
Sbjct: 224 VVSLADGGEEHRGLIAYACFLIYTLFSLLVI 254


>At3g52760.1 68416.m05813 integral membrane Yip1 family protein
           contains Pfam domain, PF04893: Yip1 domain
          Length = 257

 Score = 32.3 bits (70), Expect = 0.33
 Identities = 25/91 (27%), Positives = 41/91 (45%), Gaps = 2/91 (2%)
 Frame = -1

Query: 547 GNISFFQSVCVLGYCLFPVALALIICRIILFSAQNTFLFFLRLVISMIGFIWATFAATKF 368
           GN++      ++GY L PV   +I+  + LF  Q      +R V+     +WAT A +  
Sbjct: 171 GNLNLHTCTSLVGYSLLPV---VILSAVSLFVPQGAGP--VRFVLGAAFVLWATRACSNL 225

Query: 367 LGDSQPEGK--KALAVYPICLFYFILSWLVV 281
           +      G+  + L  Y   L Y + S LV+
Sbjct: 226 VVSLADGGEEHRGLISYACFLIYTLFSLLVI 256


>At4g27720.1 68417.m03984 expressed protein contains Pfam PF05631:
           Protein of unknown function (DUF791)
          Length = 460

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = -1

Query: 562 SKLLGGNISFFQSVCVLGYCLFPVALALIICRIILFSAQ 446
           SK+ GG ISF     +LG+C+F   + L    I+   +Q
Sbjct: 340 SKVKGGGISFSGCFQLLGFCIFEACVGLFWPSIMKMRSQ 378


>At4g22550.1 68417.m03255 phosphatidic acid phosphatase-related /
           PAP2-related contains Pfam profile PF01569: PAP2
           superfamily
          Length = 213

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 15/29 (51%), Positives = 18/29 (62%)
 Frame = -1

Query: 634 NDGGPEFAEVFVIVWIGAAVVTINSKLLG 548
           NDG  +  EV V+VWI A V  I+  LLG
Sbjct: 152 NDGDVK-VEVVVVVWIWATVTAISRILLG 179


>At3g16340.1 68416.m02066 ABC transporter family protein similar to
            PDR5-like ABC transporter GI:1514643 from [Spirodela
            polyrhiza]; contains Pfam profile: PF00005 ABC
            transporter
          Length = 1416

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 24/105 (22%), Positives = 47/105 (44%), Gaps = 7/105 (6%)
 Frame = -1

Query: 685  TLMATILQGS-----AERADNSNDGGPEFAEVFV-IVWIGAAVVTINSKLLGGNIS-FFQ 527
            TL A ++ GS       + +N+ND       ++  ++++G    +    L+    S F++
Sbjct: 1166 TLAAAVMLGSIFWKVGTKRENANDLTKVIGAMYAAVLFVGVNNSSSVQPLIAVERSVFYR 1225

Query: 526  SVCVLGYCLFPVALALIICRIILFSAQNTFLFFLRLVISMIGFIW 392
                  Y   P ALA ++C I     Q T  ++  ++ +M+ F W
Sbjct: 1226 ERAAEMYSALPYALAQVVCEIPYVLIQTT--YYTLIIYAMMCFEW 1268


>At1g10470.1 68414.m01179 two-component responsive regulator /
           response regulator 4 (ARR4) identical to responce
           regulator1 GI:3273195 from [Arabidopsis thaliana];
           identical to cDNA ARR4 mRNA for response regulator 4
           GI:3953596
          Length = 259

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
 Frame = +3

Query: 489 ATGNKQ*PRTHTDWKNEMFPPSSLELIVTT-AAPIQTITNTSANSGPPSLELSALSAEP 662
           + GNK+     +   N   PP S  L ++  ++P  T++  S++S PP   +   S  P
Sbjct: 168 SNGNKRKLPEDSSSVNSSLPPPSPPLTISPESSPPLTVSTESSDSSPPLSPVEIFSTSP 226


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,840,622
Number of Sequences: 28952
Number of extensions: 295480
Number of successful extensions: 712
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 694
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 708
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1565336320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)