Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12b08f
         (630 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC644.13c |||Rab GTPase binding |Schizosaccharomyces pombe|chr...   111   6e-26
SPCC61.04c |||Rab GTPase binding|Schizosaccharomyces pombe|chr 3...    41   1e-04
SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schiz...    27   2.2  
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    27   3.0  
SPAC22F3.09c |res2|mcs1, pct1|MBF transcription factor complex s...    26   3.9  
SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces...    26   3.9  
SPAC4D7.02c |||glycerophosphoryl diester phosphodiesterase |Schi...    26   3.9  

>SPAC644.13c |||Rab GTPase binding |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 225

 Score =  111 bits (268), Expect = 6e-26
 Identities = 50/122 (40%), Positives = 77/122 (63%)
 Frame = +1

Query: 211 NTLDEPIKETFMRDLRAVGNKFYHVLIPREKTSLLKEWDLWGPLLLCTLMATILQGSAER 390
           ++LDEPI+ T   + RA+G K  +VL P+    +L++WDLWGPL+   ++A  L  S ++
Sbjct: 55  DSLDEPIRVTLFNEFRAIGEKLVYVLYPKN-AQVLRDWDLWGPLIFSLVIALALALSTDK 113

Query: 391 ADNSNDGGPEFAEVFVIVWIGAAVVTINSKLLGGNISFFQSVCVLGYCLFPVALALIICR 570
            +  +     F  V  ++W G AV ++N KLLG NIS FQS+C+LGY  FP+ +A I+C 
Sbjct: 114 IERES----VFTVVVALIWFGEAVCSLNIKLLGANISIFQSMCILGYSSFPLMIASIVCA 169

Query: 571 II 576
            +
Sbjct: 170 FV 171


>SPCC61.04c |||Rab GTPase binding|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 227

 Score = 41.1 bits (92), Expect = 1e-04
 Identities = 36/140 (25%), Positives = 62/140 (44%), Gaps = 7/140 (5%)
 Frame = +1

Query: 187 SSGDNMEFNTLDEPIKETFMRDLRA----VGNKFYHVLIPREKTS--LLKEWDLWGPLLL 348
           S G    F+T   P + + + +L      +  K  HVL P +     ++ + D+ GP+L 
Sbjct: 42  SQGWLAAFSTSGYPGEPSLLEELEINFGHIKQKTTHVLNPFKHVDVHIMDDTDMAGPILF 101

Query: 349 CTLMATILQGSAERADNSNDGGPEFAEVFVIVWIGAAVVTINSKLLGG-NISFFQSVCVL 525
           C L +T L         S  G   F  ++ I  +G+  +    +L+   N+ F ++V VL
Sbjct: 102 CLLFSTFL---------SLHGRSHFGYIYGIALLGSLSLHFVLRLMSAKNLFFTRTVSVL 152

Query: 526 GYCLFPVALALIICRIILFS 585
           GY L P+ +      I  F+
Sbjct: 153 GYSLLPLVVIAFFKNIFTFN 172


>SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1273

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
 Frame = -2

Query: 491 PPSSLELIVTTAA---PIQTITNTSANSGPPSLELSALSAEPWRIVAIRVQR 345
           PP++   +V+  A   P+ +   TS N   P+L  S L A P   VAI   R
Sbjct: 310 PPTTAPAVVSPPASSFPLMSSAATSGNISSPALFDSELGARPEGSVAIEPSR 361


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 3227

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 5/66 (7%)
 Frame = +1

Query: 214  TLDEPIKETF-MRDLRAVGNKFYHVLIPREKTSLLKEW----DLWGPLLLCTLMATILQG 378
            TL+  +K  F M D    G+K  HVL  R   S+L  W    DL  P +   L+  +L  
Sbjct: 1077 TLNMALKSEFDMTDFNNSGSKLMHVLHARIFISVLHLWRSADDLHLPYITRALLTNVLSN 1136

Query: 379  SAERAD 396
              +  D
Sbjct: 1137 CYQFED 1142


>SPAC22F3.09c |res2|mcs1, pct1|MBF transcription factor complex
           subunit Res2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 657

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
 Frame = -3

Query: 196 LHWM-ALGQVYSFPPQLLPHLPLDTCRISSQTYSFQYYLFTN*IKCESYSFTL 41
           LHW  ++G +      L  +  +  C   SQT   +  +FTN   C+++   L
Sbjct: 252 LHWACSMGHIEMIKLLLRANADIGVCNRLSQTPLMRSVIFTNNYDCQTFGQVL 304


>SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 967

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 10/23 (43%), Positives = 19/23 (82%), Gaps = 1/23 (4%)
 Frame = +3

Query: 555 AHHLPHH-TVQCAEHLPILPEAS 620
           A ++PH+ + + ++HLP+LP+AS
Sbjct: 243 ATYIPHNPSKKSSQHLPLLPDAS 265


>SPAC4D7.02c |||glycerophosphoryl diester phosphodiesterase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 319

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -1

Query: 153 NYSHISRWIHVVFRVKRIHFNIIYLR 76
           +Y H S W+H+++   R  F    LR
Sbjct: 290 HYFHYSEWLHMIYGFLRAQFVFFLLR 315


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,829,353
Number of Sequences: 5004
Number of extensions: 63072
Number of successful extensions: 201
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 199
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)