BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fmgV12b08f (630 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC644.13c |||Rab GTPase binding |Schizosaccharomyces pombe|chr... 111 6e-26 SPCC61.04c |||Rab GTPase binding|Schizosaccharomyces pombe|chr 3... 41 1e-04 SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schiz... 27 2.2 SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||... 27 3.0 SPAC22F3.09c |res2|mcs1, pct1|MBF transcription factor complex s... 26 3.9 SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces... 26 3.9 SPAC4D7.02c |||glycerophosphoryl diester phosphodiesterase |Schi... 26 3.9 >SPAC644.13c |||Rab GTPase binding |Schizosaccharomyces pombe|chr 1|||Manual Length = 225 Score = 111 bits (268), Expect = 6e-26 Identities = 50/122 (40%), Positives = 77/122 (63%) Frame = +1 Query: 211 NTLDEPIKETFMRDLRAVGNKFYHVLIPREKTSLLKEWDLWGPLLLCTLMATILQGSAER 390 ++LDEPI+ T + RA+G K +VL P+ +L++WDLWGPL+ ++A L S ++ Sbjct: 55 DSLDEPIRVTLFNEFRAIGEKLVYVLYPKN-AQVLRDWDLWGPLIFSLVIALALALSTDK 113 Query: 391 ADNSNDGGPEFAEVFVIVWIGAAVVTINSKLLGGNISFFQSVCVLGYCLFPVALALIICR 570 + + F V ++W G AV ++N KLLG NIS FQS+C+LGY FP+ +A I+C Sbjct: 114 IERES----VFTVVVALIWFGEAVCSLNIKLLGANISIFQSMCILGYSSFPLMIASIVCA 169 Query: 571 II 576 + Sbjct: 170 FV 171 >SPCC61.04c |||Rab GTPase binding|Schizosaccharomyces pombe|chr 3|||Manual Length = 227 Score = 41.1 bits (92), Expect = 1e-04 Identities = 36/140 (25%), Positives = 62/140 (44%), Gaps = 7/140 (5%) Frame = +1 Query: 187 SSGDNMEFNTLDEPIKETFMRDLRA----VGNKFYHVLIPREKTS--LLKEWDLWGPLLL 348 S G F+T P + + + +L + K HVL P + ++ + D+ GP+L Sbjct: 42 SQGWLAAFSTSGYPGEPSLLEELEINFGHIKQKTTHVLNPFKHVDVHIMDDTDMAGPILF 101 Query: 349 CTLMATILQGSAERADNSNDGGPEFAEVFVIVWIGAAVVTINSKLLGG-NISFFQSVCVL 525 C L +T L S G F ++ I +G+ + +L+ N+ F ++V VL Sbjct: 102 CLLFSTFL---------SLHGRSHFGYIYGIALLGSLSLHFVLRLMSAKNLFFTRTVSVL 152 Query: 526 GYCLFPVALALIICRIILFS 585 GY L P+ + I F+ Sbjct: 153 GYSLLPLVVIAFFKNIFTFN 172 >SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schizosaccharomyces pombe|chr 1|||Manual Length = 1273 Score = 27.1 bits (57), Expect = 2.2 Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 3/52 (5%) Frame = -2 Query: 491 PPSSLELIVTTAA---PIQTITNTSANSGPPSLELSALSAEPWRIVAIRVQR 345 PP++ +V+ A P+ + TS N P+L S L A P VAI R Sbjct: 310 PPTTAPAVVSPPASSFPLMSSAATSGNISSPALFDSELGARPEGSVAIEPSR 361 >SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1|||Manual Length = 3227 Score = 26.6 bits (56), Expect = 3.0 Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 5/66 (7%) Frame = +1 Query: 214 TLDEPIKETF-MRDLRAVGNKFYHVLIPREKTSLLKEW----DLWGPLLLCTLMATILQG 378 TL+ +K F M D G+K HVL R S+L W DL P + L+ +L Sbjct: 1077 TLNMALKSEFDMTDFNNSGSKLMHVLHARIFISVLHLWRSADDLHLPYITRALLTNVLSN 1136 Query: 379 SAERAD 396 + D Sbjct: 1137 CYQFED 1142 >SPAC22F3.09c |res2|mcs1, pct1|MBF transcription factor complex subunit Res2|Schizosaccharomyces pombe|chr 1|||Manual Length = 657 Score = 26.2 bits (55), Expect = 3.9 Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 1/53 (1%) Frame = -3 Query: 196 LHWM-ALGQVYSFPPQLLPHLPLDTCRISSQTYSFQYYLFTN*IKCESYSFTL 41 LHW ++G + L + + C SQT + +FTN C+++ L Sbjct: 252 LHWACSMGHIEMIKLLLRANADIGVCNRLSQTPLMRSVIFTNNYDCQTFGQVL 304 >SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces pombe|chr 3|||Manual Length = 967 Score = 26.2 bits (55), Expect = 3.9 Identities = 10/23 (43%), Positives = 19/23 (82%), Gaps = 1/23 (4%) Frame = +3 Query: 555 AHHLPHH-TVQCAEHLPILPEAS 620 A ++PH+ + + ++HLP+LP+AS Sbjct: 243 ATYIPHNPSKKSSQHLPLLPDAS 265 >SPAC4D7.02c |||glycerophosphoryl diester phosphodiesterase |Schizosaccharomyces pombe|chr 1|||Manual Length = 319 Score = 26.2 bits (55), Expect = 3.9 Identities = 9/26 (34%), Positives = 14/26 (53%) Frame = -1 Query: 153 NYSHISRWIHVVFRVKRIHFNIIYLR 76 +Y H S W+H+++ R F LR Sbjct: 290 HYFHYSEWLHMIYGFLRAQFVFFLLR 315 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,829,353 Number of Sequences: 5004 Number of extensions: 63072 Number of successful extensions: 201 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 187 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 199 length of database: 2,362,478 effective HSP length: 70 effective length of database: 2,012,198 effective search space used: 279695522 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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