BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fmgV12b08f (630 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 01_06_1467 + 37570289-37570771,37571818-37571892,37572006-37572266 88 5e-18 05_04_0443 - 21283680-21283940,21284044-21284118,21284620-212846... 85 3e-17 05_03_0316 + 12242823-12242964,12243032-12243282,12243370-122435... 31 0.75 06_01_1202 + 10389090-10389140,10389218-10389853,10390355-103904... 31 1.00 11_04_0122 + 13689847-13690704 29 4.0 04_01_0246 + 3225743-3226473,3226493-3226624,3227580-3227670,322... 28 5.3 12_01_0428 + 3374519-3375423,3376663-3376742,3377206-3377217,337... 28 7.0 07_03_1348 + 25945444-25945551,25946411-25946607,25946732-259468... 28 7.0 05_06_0132 + 25893241-25893435,25894266-25894487,25894567-258948... 28 7.0 03_06_0680 - 35497868-35497884,35498058-35501961 28 7.0 11_06_0418 - 23317077-23317343,23317614-23317787,23317886-233179... 27 9.3 10_01_0266 + 2816391-2818898,2818934-2819162,2819369-2819444,281... 27 9.3 02_02_0565 + 11550071-11550909,11551603-11553133,11553205-11553537 27 9.3 >01_06_1467 + 37570289-37570771,37571818-37571892,37572006-37572266 Length = 272 Score = 88.2 bits (209), Expect = 5e-18 Identities = 46/125 (36%), Positives = 68/125 (54%), Gaps = 4/125 (3%) Frame = +1 Query: 211 NTLDEPIKETFMRDLRAVGNKFYHVLIPR----EKTSLLKEWDLWGPLLLCTLMATILQG 378 NTL EP+ +T RDL + + V+ P + L++WDLWGP + L Sbjct: 96 NTLTEPVWDTVKRDLARIVSNLKLVVFPNPYREDPGKALRDWDLWGPFFFIVFLGLTLSW 155 Query: 379 SAERADNSNDGGPEFAEVFVIVWIGAAVVTINSKLLGGNISFFQSVCVLGYCLFPVALAL 558 SA S FA F ++ GA ++T+N LLGG+I FFQS+ +LGYCLFP+ + Sbjct: 156 SA-----SVKKSEVFAVAFAVLAAGAIILTLNVLLLGGHIIFFQSLSLLGYCLFPLDVGA 210 Query: 559 IICRI 573 ++C + Sbjct: 211 LVCML 215 >05_04_0443 - 21283680-21283940,21284044-21284118,21284620-21284649, 21286744-21287247 Length = 289 Score = 85.4 bits (202), Expect = 3e-17 Identities = 49/149 (32%), Positives = 75/149 (50%), Gaps = 9/149 (6%) Frame = +1 Query: 211 NTLDEPIKETFMRDLRAVGNKFYHVLIPR----EKTSLLKEWDLWGPLLLCTLMATILQG 378 NTL EP+ +T RDL + + V+ P + L++WDLWGP + L Sbjct: 103 NTLTEPVLDTVKRDLARIVSNLKLVVFPNPFREDPGKALRDWDLWGPFFFIVFLGLTLSW 162 Query: 379 SAE-----RADNSNDGGPEFAEVFVIVWIGAAVVTINSKLLGGNISFFQSVCVLGYCLFP 543 SA FA F ++ GA ++T+N LLGG I+FFQS+ +LGYCLFP Sbjct: 163 SASVKKIIMFTRFLCKSEVFAVAFAVLAAGAIILTLNVLLLGGRINFFQSLSLLGYCLFP 222 Query: 544 VALALIICRIILFSAQNTFLFFLRLVISM 630 + + +IC + N L + +V+++ Sbjct: 223 LDVGALICML----KDNVLLKIIAVVVTL 247 >05_03_0316 + 12242823-12242964,12243032-12243282,12243370-12243573, 12243660-12243752,12243828-12243926,12244006-12244308 Length = 363 Score = 31.1 bits (67), Expect = 0.75 Identities = 13/47 (27%), Positives = 24/47 (51%) Frame = -1 Query: 588 RTEQYDAADDEREGHREQTVAENAHRLEE*NVSTQQFRVDSYNCSPD 448 R+++ D G + Q + N H +EE N++ ++R + Y PD Sbjct: 4 RSQRLQGLDFSENGVQNQEMVPNDHYVEEQNITNAEWRSNCYEYHPD 50 >06_01_1202 + 10389090-10389140,10389218-10389853,10390355-10390439, 10390536-10390654,10391251-10391318,10391401-10391710 Length = 422 Score = 30.7 bits (66), Expect = 1.00 Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 1/79 (1%) Frame = +1 Query: 187 SSGDNMEFNTLDEPIKETFMRDLRAVGNKFYHVLIPREKTSLLKEWDLWG-PLLLCTLMA 363 S G N + + D+ I E +D G K HV+ +EKT + +EW ++G P Sbjct: 235 SRGLNFDLDRSDDFIAEVTDKD---PGGK-RHVVDLKEKTCICREWQVYGKPCAHALCFI 290 Query: 364 TILQGSAERADNSNDGGPE 420 T ++G R +++D G E Sbjct: 291 TSIRGVQCRWWDNSDSGLE 309 >11_04_0122 + 13689847-13690704 Length = 285 Score = 28.7 bits (61), Expect = 4.0 Identities = 13/50 (26%), Positives = 25/50 (50%) Frame = -2 Query: 476 ELIVTTAAPIQTITNTSANSGPPSLELSALSAEPWRIVAIRVQRSNGPHR 327 E++V ++ + +A++ SL+ LS PWR + + GP+R Sbjct: 192 EVLVARPDDVRKVVRAAASAARRSLKRRRLSVPPWRKRKFMIAKWLGPYR 241 >04_01_0246 + 3225743-3226473,3226493-3226624,3227580-3227670, 3228617-3229074,3229342-3229864 Length = 644 Score = 28.3 bits (60), Expect = 5.3 Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 1/44 (2%) Frame = +1 Query: 97 MNTFDSKYDMYPAGD-VGVIEGEMNIPGRGPSSGDNMEFNTLDE 225 ++++ S+ P+G G+I G+ N G GP +EF+T D+ Sbjct: 133 LSSYPSRVPPKPSGQSFGLIAGDANDAGDGPDRFVAVEFDTYDD 176 >12_01_0428 + 3374519-3375423,3376663-3376742,3377206-3377217, 3377337-3377379,3378304-3380332 Length = 1022 Score = 27.9 bits (59), Expect = 7.0 Identities = 10/19 (52%), Positives = 12/19 (63%) Frame = +3 Query: 558 HHLPHHTVQCAEHLPILPE 614 +HLPHH C +L I PE Sbjct: 495 NHLPHHLKACMMYLSIFPE 513 >07_03_1348 + 25945444-25945551,25946411-25946607,25946732-25946804, 25947003-25947092,25947410-25947465,25947559-25947738, 25947813-25948006,25948095-25948234,25948324-25948466, 25948549-25948697,25948784-25949148,25949264-25949368 Length = 599 Score = 27.9 bits (59), Expect = 7.0 Identities = 12/28 (42%), Positives = 15/28 (53%) Frame = +2 Query: 218 WMNRSKRLLCETSELSETNSTMSSFREK 301 W LLCE SEL+ S SS R++ Sbjct: 116 WSREEDLLLCEISELANMRSVTSSVRQQ 143 >05_06_0132 + 25893241-25893435,25894266-25894487,25894567-25894863, 25894944-25895111,25895201-25895368,25895456-25895536, 25895704-25895770,25895874-25895971,25896587-25896659, 25896753-25896823,25896919-25896968,25897698-25897810, 25898182-25898300,25898629-25898721,25899025-25899051, 25899422-25899823,25900467-25900513,25900612-25900651, 25900733-25900795,25900881-25901018,25901873-25902031, 25902111-25902164,25902324-25902392,25902514-25902643, 25902909-25902949,25903133-25903178,25903200-25903357, 25903560-25903605,25903702-25903853,25904022-25904243 Length = 1202 Score = 27.9 bits (59), Expect = 7.0 Identities = 11/20 (55%), Positives = 14/20 (70%) Frame = -2 Query: 209 NSMLSPLDGPRPGIFISPSI 150 +S L PLD P PG+ ISP + Sbjct: 94 SSQLPPLDVPLPGVIISPPL 113 >03_06_0680 - 35497868-35497884,35498058-35501961 Length = 1306 Score = 27.9 bits (59), Expect = 7.0 Identities = 20/78 (25%), Positives = 39/78 (50%), Gaps = 1/78 (1%) Frame = -2 Query: 608 KNRKVFCALNSMMRQMMSARATGNKQ*PRTHTDW-KNEMFPPSSLELIVTTAAPIQTITN 432 K+ K+ C ++ +M + A+++ K+ T K+E FP S+ L ++ + I N Sbjct: 490 KDSKITCKIHDLMHDV--AQSSMGKECAAIATKLSKSEDFPSSARHLFLS-GYRAEAILN 546 Query: 431 TSANSGPPSLELSALSAE 378 TS G P ++ S++ Sbjct: 547 TSLEKGHPGIQTLICSSQ 564 >11_06_0418 - 23317077-23317343,23317614-23317787,23317886-23317971, 23318125-23318244,23318338-23318368,23318457-23318532, 23318672-23318759,23318877-23318938,23319041-23319117, 23319890-23319992,23320237-23320298,23321116-23321289, 23322160-23322405 Length = 521 Score = 27.5 bits (58), Expect = 9.3 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%) Frame = +1 Query: 358 MATILQGSAERA-DNSNDGGPEFAEVFVIVWIGAAVVTINS 477 M + GS+E DN+N+ GPE + V++G +NS Sbjct: 338 MIELTNGSSEGGKDNANEDGPENNPQYTTVYVGNLPHDVNS 378 >10_01_0266 + 2816391-2818898,2818934-2819162,2819369-2819444, 2819776-2819830,2822042-2822110,2823077-2823321, 2824029-2824065 Length = 1072 Score = 27.5 bits (58), Expect = 9.3 Identities = 13/48 (27%), Positives = 24/48 (50%), Gaps = 1/48 (2%) Frame = -3 Query: 193 HWMALGQVYSFPPQLLPHLPLDTCRISSQTYSFQYYLFT-N*IKCESY 53 +WM + + S+P +LL + + + TYS + T + I+C Y Sbjct: 841 YWMIIEMLNSYPRELLDNFQVMDSSAAGVTYSLLCFFMTDSAIRCNGY 888 >02_02_0565 + 11550071-11550909,11551603-11553133,11553205-11553537 Length = 900 Score = 27.5 bits (58), Expect = 9.3 Identities = 10/19 (52%), Positives = 12/19 (63%) Frame = +3 Query: 558 HHLPHHTVQCAEHLPILPE 614 +HLPHH C +L I PE Sbjct: 432 NHLPHHLKACMLYLSIFPE 450 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 18,785,178 Number of Sequences: 37544 Number of extensions: 426270 Number of successful extensions: 1323 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 1274 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1319 length of database: 14,793,348 effective HSP length: 79 effective length of database: 11,827,372 effective search space used: 1537558360 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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