Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV12b08f
(630 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1467 + 37570289-37570771,37571818-37571892,37572006-37572266 88 5e-18
05_04_0443 - 21283680-21283940,21284044-21284118,21284620-212846... 85 3e-17
05_03_0316 + 12242823-12242964,12243032-12243282,12243370-122435... 31 0.75
06_01_1202 + 10389090-10389140,10389218-10389853,10390355-103904... 31 1.00
11_04_0122 + 13689847-13690704 29 4.0
04_01_0246 + 3225743-3226473,3226493-3226624,3227580-3227670,322... 28 5.3
12_01_0428 + 3374519-3375423,3376663-3376742,3377206-3377217,337... 28 7.0
07_03_1348 + 25945444-25945551,25946411-25946607,25946732-259468... 28 7.0
05_06_0132 + 25893241-25893435,25894266-25894487,25894567-258948... 28 7.0
03_06_0680 - 35497868-35497884,35498058-35501961 28 7.0
11_06_0418 - 23317077-23317343,23317614-23317787,23317886-233179... 27 9.3
10_01_0266 + 2816391-2818898,2818934-2819162,2819369-2819444,281... 27 9.3
02_02_0565 + 11550071-11550909,11551603-11553133,11553205-11553537 27 9.3
>01_06_1467 + 37570289-37570771,37571818-37571892,37572006-37572266
Length = 272
Score = 88.2 bits (209), Expect = 5e-18
Identities = 46/125 (36%), Positives = 68/125 (54%), Gaps = 4/125 (3%)
Frame = +1
Query: 211 NTLDEPIKETFMRDLRAVGNKFYHVLIPR----EKTSLLKEWDLWGPLLLCTLMATILQG 378
NTL EP+ +T RDL + + V+ P + L++WDLWGP + L
Sbjct: 96 NTLTEPVWDTVKRDLARIVSNLKLVVFPNPYREDPGKALRDWDLWGPFFFIVFLGLTLSW 155
Query: 379 SAERADNSNDGGPEFAEVFVIVWIGAAVVTINSKLLGGNISFFQSVCVLGYCLFPVALAL 558
SA S FA F ++ GA ++T+N LLGG+I FFQS+ +LGYCLFP+ +
Sbjct: 156 SA-----SVKKSEVFAVAFAVLAAGAIILTLNVLLLGGHIIFFQSLSLLGYCLFPLDVGA 210
Query: 559 IICRI 573
++C +
Sbjct: 211 LVCML 215
>05_04_0443 -
21283680-21283940,21284044-21284118,21284620-21284649,
21286744-21287247
Length = 289
Score = 85.4 bits (202), Expect = 3e-17
Identities = 49/149 (32%), Positives = 75/149 (50%), Gaps = 9/149 (6%)
Frame = +1
Query: 211 NTLDEPIKETFMRDLRAVGNKFYHVLIPR----EKTSLLKEWDLWGPLLLCTLMATILQG 378
NTL EP+ +T RDL + + V+ P + L++WDLWGP + L
Sbjct: 103 NTLTEPVLDTVKRDLARIVSNLKLVVFPNPFREDPGKALRDWDLWGPFFFIVFLGLTLSW 162
Query: 379 SAE-----RADNSNDGGPEFAEVFVIVWIGAAVVTINSKLLGGNISFFQSVCVLGYCLFP 543
SA FA F ++ GA ++T+N LLGG I+FFQS+ +LGYCLFP
Sbjct: 163 SASVKKIIMFTRFLCKSEVFAVAFAVLAAGAIILTLNVLLLGGRINFFQSLSLLGYCLFP 222
Query: 544 VALALIICRIILFSAQNTFLFFLRLVISM 630
+ + +IC + N L + +V+++
Sbjct: 223 LDVGALICML----KDNVLLKIIAVVVTL 247
>05_03_0316 +
12242823-12242964,12243032-12243282,12243370-12243573,
12243660-12243752,12243828-12243926,12244006-12244308
Length = 363
Score = 31.1 bits (67), Expect = 0.75
Identities = 13/47 (27%), Positives = 24/47 (51%)
Frame = -1
Query: 588 RTEQYDAADDEREGHREQTVAENAHRLEE*NVSTQQFRVDSYNCSPD 448
R+++ D G + Q + N H +EE N++ ++R + Y PD
Sbjct: 4 RSQRLQGLDFSENGVQNQEMVPNDHYVEEQNITNAEWRSNCYEYHPD 50
>06_01_1202 +
10389090-10389140,10389218-10389853,10390355-10390439,
10390536-10390654,10391251-10391318,10391401-10391710
Length = 422
Score = 30.7 bits (66), Expect = 1.00
Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
Frame = +1
Query: 187 SSGDNMEFNTLDEPIKETFMRDLRAVGNKFYHVLIPREKTSLLKEWDLWG-PLLLCTLMA 363
S G N + + D+ I E +D G K HV+ +EKT + +EW ++G P
Sbjct: 235 SRGLNFDLDRSDDFIAEVTDKD---PGGK-RHVVDLKEKTCICREWQVYGKPCAHALCFI 290
Query: 364 TILQGSAERADNSNDGGPE 420
T ++G R +++D G E
Sbjct: 291 TSIRGVQCRWWDNSDSGLE 309
>11_04_0122 + 13689847-13690704
Length = 285
Score = 28.7 bits (61), Expect = 4.0
Identities = 13/50 (26%), Positives = 25/50 (50%)
Frame = -2
Query: 476 ELIVTTAAPIQTITNTSANSGPPSLELSALSAEPWRIVAIRVQRSNGPHR 327
E++V ++ + +A++ SL+ LS PWR + + GP+R
Sbjct: 192 EVLVARPDDVRKVVRAAASAARRSLKRRRLSVPPWRKRKFMIAKWLGPYR 241
>04_01_0246 +
3225743-3226473,3226493-3226624,3227580-3227670,
3228617-3229074,3229342-3229864
Length = 644
Score = 28.3 bits (60), Expect = 5.3
Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = +1
Query: 97 MNTFDSKYDMYPAGD-VGVIEGEMNIPGRGPSSGDNMEFNTLDE 225
++++ S+ P+G G+I G+ N G GP +EF+T D+
Sbjct: 133 LSSYPSRVPPKPSGQSFGLIAGDANDAGDGPDRFVAVEFDTYDD 176
>12_01_0428 +
3374519-3375423,3376663-3376742,3377206-3377217,
3377337-3377379,3378304-3380332
Length = 1022
Score = 27.9 bits (59), Expect = 7.0
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = +3
Query: 558 HHLPHHTVQCAEHLPILPE 614
+HLPHH C +L I PE
Sbjct: 495 NHLPHHLKACMMYLSIFPE 513
>07_03_1348 +
25945444-25945551,25946411-25946607,25946732-25946804,
25947003-25947092,25947410-25947465,25947559-25947738,
25947813-25948006,25948095-25948234,25948324-25948466,
25948549-25948697,25948784-25949148,25949264-25949368
Length = 599
Score = 27.9 bits (59), Expect = 7.0
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +2
Query: 218 WMNRSKRLLCETSELSETNSTMSSFREK 301
W LLCE SEL+ S SS R++
Sbjct: 116 WSREEDLLLCEISELANMRSVTSSVRQQ 143
>05_06_0132 +
25893241-25893435,25894266-25894487,25894567-25894863,
25894944-25895111,25895201-25895368,25895456-25895536,
25895704-25895770,25895874-25895971,25896587-25896659,
25896753-25896823,25896919-25896968,25897698-25897810,
25898182-25898300,25898629-25898721,25899025-25899051,
25899422-25899823,25900467-25900513,25900612-25900651,
25900733-25900795,25900881-25901018,25901873-25902031,
25902111-25902164,25902324-25902392,25902514-25902643,
25902909-25902949,25903133-25903178,25903200-25903357,
25903560-25903605,25903702-25903853,25904022-25904243
Length = 1202
Score = 27.9 bits (59), Expect = 7.0
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = -2
Query: 209 NSMLSPLDGPRPGIFISPSI 150
+S L PLD P PG+ ISP +
Sbjct: 94 SSQLPPLDVPLPGVIISPPL 113
>03_06_0680 - 35497868-35497884,35498058-35501961
Length = 1306
Score = 27.9 bits (59), Expect = 7.0
Identities = 20/78 (25%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
Frame = -2
Query: 608 KNRKVFCALNSMMRQMMSARATGNKQ*PRTHTDW-KNEMFPPSSLELIVTTAAPIQTITN 432
K+ K+ C ++ +M + A+++ K+ T K+E FP S+ L ++ + I N
Sbjct: 490 KDSKITCKIHDLMHDV--AQSSMGKECAAIATKLSKSEDFPSSARHLFLS-GYRAEAILN 546
Query: 431 TSANSGPPSLELSALSAE 378
TS G P ++ S++
Sbjct: 547 TSLEKGHPGIQTLICSSQ 564
>11_06_0418 -
23317077-23317343,23317614-23317787,23317886-23317971,
23318125-23318244,23318338-23318368,23318457-23318532,
23318672-23318759,23318877-23318938,23319041-23319117,
23319890-23319992,23320237-23320298,23321116-23321289,
23322160-23322405
Length = 521
Score = 27.5 bits (58), Expect = 9.3
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +1
Query: 358 MATILQGSAERA-DNSNDGGPEFAEVFVIVWIGAAVVTINS 477
M + GS+E DN+N+ GPE + V++G +NS
Sbjct: 338 MIELTNGSSEGGKDNANEDGPENNPQYTTVYVGNLPHDVNS 378
>10_01_0266 +
2816391-2818898,2818934-2819162,2819369-2819444,
2819776-2819830,2822042-2822110,2823077-2823321,
2824029-2824065
Length = 1072
Score = 27.5 bits (58), Expect = 9.3
Identities = 13/48 (27%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = -3
Query: 193 HWMALGQVYSFPPQLLPHLPLDTCRISSQTYSFQYYLFT-N*IKCESY 53
+WM + + S+P +LL + + + TYS + T + I+C Y
Sbjct: 841 YWMIIEMLNSYPRELLDNFQVMDSSAAGVTYSLLCFFMTDSAIRCNGY 888
>02_02_0565 + 11550071-11550909,11551603-11553133,11553205-11553537
Length = 900
Score = 27.5 bits (58), Expect = 9.3
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = +3
Query: 558 HHLPHHTVQCAEHLPILPE 614
+HLPHH C +L I PE
Sbjct: 432 NHLPHHLKACMLYLSIFPE 450
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,785,178
Number of Sequences: 37544
Number of extensions: 426270
Number of successful extensions: 1323
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1274
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1319
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1537558360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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