Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV12b08f
(630 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_51398| Best HMM Match : zf-Tim10_DDP (HMM E-Value=2.7e-28) 60 2e-09
SB_14318| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.012
SB_53774| Best HMM Match : efhand (HMM E-Value=0.012) 31 0.77
SB_20563| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8
SB_34803| Best HMM Match : Pox_A32 (HMM E-Value=3.7) 29 2.4
SB_39150| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_34910| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_50367| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.2
SB_26360| Best HMM Match : PKD_channel (HMM E-Value=1.3e-30) 28 7.2
SB_29339| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.5
SB_21496| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.5
>SB_51398| Best HMM Match : zf-Tim10_DDP (HMM E-Value=2.7e-28)
Length = 143
Score = 59.7 bits (138), Expect = 2e-09
Identities = 24/42 (57%), Positives = 32/42 (76%)
Frame = +1
Query: 499 SFFQSVCVLGYCLFPVALALIICRIILFSAQNTFLFFLRLVI 624
SFFQSVCVLGYC+ P+ ++L +CR+IL + QN LF R V+
Sbjct: 2 SFFQSVCVLGYCILPLDISLTVCRLILLAKQNLALFIARFVV 43
>SB_14318| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 341
Score = 37.1 bits (82), Expect = 0.012
Identities = 36/122 (29%), Positives = 55/122 (45%), Gaps = 7/122 (5%)
Frame = +1
Query: 220 DEPIKETFMRDLRAVGNKFYHVLIPREKTS--LLKEWDLWGPLLLCTLMATILQGSAERA 393
+ P+ E +L + K VL P + T ++ + DL GPLL C IL
Sbjct: 173 EPPLLEELGLNLDHIWQKTLSVLHPLKPTDQHIMDDTDLGGPLLFCLAFGGILL------ 226
Query: 394 DNSNDGGPEFAEVFVIVWIGA-AVVTINSKLLGGNISFFQSVCVLGYCLFPV----ALAL 558
G F ++ +G A+ I + + ++SF V VLGYCL P+ A+AL
Sbjct: 227 ---LHGKVTFGYIYGYSLLGCIAMYAILNLMSLADVSFSTVVSVLGYCLLPMVGLSAIAL 283
Query: 559 II 564
I+
Sbjct: 284 IV 285
>SB_53774| Best HMM Match : efhand (HMM E-Value=0.012)
Length = 918
Score = 31.1 bits (67), Expect = 0.77
Identities = 16/57 (28%), Positives = 25/57 (43%)
Frame = +3
Query: 327 PVGAVTPLHSYGHYPPGLCRKS*QLQRRRTRVC*SICDSLDRGCSCNYQL*TAGWKH 497
P + SYG P R S + + R C ++CD ++ + N + T WKH
Sbjct: 146 PATVCDRVRSYGSTPCDRVRPSAIIWKHTMRSCATVCDHMEAHLAINVRPCTVIWKH 202
>SB_20563| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 238
Score = 29.9 bits (64), Expect = 1.8
Identities = 16/53 (30%), Positives = 26/53 (49%)
Frame = -1
Query: 309 TGLFSRNEDMVEFVSDSSEVSHKSLFDRFIQCVKLHVVSTGWPSARYIHFPLN 151
+GL+ R +D++ S SS +FD + +L VV P+ R + LN
Sbjct: 108 SGLYYRTDDIISSASYSSSTQPCIVFDSHLTGRRLRVVFKSHPTPRRLQVALN 160
>SB_34803| Best HMM Match : Pox_A32 (HMM E-Value=3.7)
Length = 354
Score = 29.5 bits (63), Expect = 2.4
Identities = 13/29 (44%), Positives = 20/29 (68%)
Frame = -2
Query: 473 LIVTTAAPIQTITNTSANSGPPSLELSAL 387
+I+TT+A I TNT+ +S P +L LS +
Sbjct: 288 IIITTSAAIPATTNTTQHSSPITLPLSII 316
>SB_39150| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 113
Score = 29.1 bits (62), Expect = 3.1
Identities = 13/34 (38%), Positives = 23/34 (67%)
Frame = +1
Query: 151 IEGEMNIPGRGPSSGDNMEFNTLDEPIKETFMRD 252
+EG++ +PG + ++ E +TLDEP+ ET R+
Sbjct: 17 VEGDITVPG---APEEDEEPSTLDEPVTETLERN 47
>SB_34910| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2147
Score = 28.7 bits (61), Expect = 4.1
Identities = 19/70 (27%), Positives = 33/70 (47%)
Frame = -2
Query: 584 LNSMMRQMMSARATGNKQ*PRTHTDWKNEMFPPSSLELIVTTAAPIQTITNTSANSGPPS 405
+ S ++ S++ T Q R+ PPS+ VT P +T SA PPS
Sbjct: 1096 VTSATQESRSSQVTSATQESRSSQVTSATQEPPSTQVTSVTHEPPSSQVT--SATQEPPS 1153
Query: 404 LELSALSAEP 375
++++++ EP
Sbjct: 1154 SQVTSVTQEP 1163
>SB_50367| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1498
Score = 27.9 bits (59), Expect = 7.2
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = +1
Query: 139 DVGVIEGEMNIPGRGPSSGDNMEFNTLDEPIKETFMRD 252
D GV+EG ++ PG+ G ++ EP E RD
Sbjct: 1000 DTGVLEGVLSQPGQSWDLGTLSVLSSYGEPFMEMLCRD 1037
>SB_26360| Best HMM Match : PKD_channel (HMM E-Value=1.3e-30)
Length = 3015
Score = 27.9 bits (59), Expect = 7.2
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = -2
Query: 236 SLIGSSNVLNSMLSPLDGPRPGIFISPSITPTS 138
+L +SN+ NS +P P G + P++ PTS
Sbjct: 56 TLAPTSNIANSTEAPTLAPTEGPTLGPTVAPTS 88
>SB_29339| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1048
Score = 27.5 bits (58), Expect = 9.5
Identities = 20/60 (33%), Positives = 30/60 (50%)
Frame = -2
Query: 509 WKNEMFPPSSLELIVTTAAPIQTITNTSANSGPPSLELSALSAEPWRIVAIRVQRSNGPH 330
W++ M L+ IV AP T+TSAN +EL L E + ++ RV++S H
Sbjct: 657 WQDHMHESLKLKTIVKGDAPTSLQTSTSANI---KVELYVL--EAYGLLLFRVEKSKEFH 711
>SB_21496| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1787
Score = 27.5 bits (58), Expect = 9.5
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = +2
Query: 215 HWMNRSKRLLCETSELSETNSTMSSFREKRPV 310
HW R ++ E E + +TM+ F +RP+
Sbjct: 815 HWGEREEKAFQEIKESISSETTMAYFNPRRPI 846
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,454,084
Number of Sequences: 59808
Number of extensions: 488753
Number of successful extensions: 1437
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1281
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1434
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1572561250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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