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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12b08f
         (630 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51398| Best HMM Match : zf-Tim10_DDP (HMM E-Value=2.7e-28)          60   2e-09
SB_14318| Best HMM Match : No HMM Matches (HMM E-Value=.)              37   0.012
SB_53774| Best HMM Match : efhand (HMM E-Value=0.012)                  31   0.77 
SB_20563| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.8  
SB_34803| Best HMM Match : Pox_A32 (HMM E-Value=3.7)                   29   2.4  
SB_39150| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.1  
SB_34910| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.1  
SB_50367| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.2  
SB_26360| Best HMM Match : PKD_channel (HMM E-Value=1.3e-30)           28   7.2  
SB_29339| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.5  
SB_21496| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.5  

>SB_51398| Best HMM Match : zf-Tim10_DDP (HMM E-Value=2.7e-28)
          Length = 143

 Score = 59.7 bits (138), Expect = 2e-09
 Identities = 24/42 (57%), Positives = 32/42 (76%)
 Frame = +1

Query: 499 SFFQSVCVLGYCLFPVALALIICRIILFSAQNTFLFFLRLVI 624
           SFFQSVCVLGYC+ P+ ++L +CR+IL + QN  LF  R V+
Sbjct: 2   SFFQSVCVLGYCILPLDISLTVCRLILLAKQNLALFIARFVV 43


>SB_14318| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 341

 Score = 37.1 bits (82), Expect = 0.012
 Identities = 36/122 (29%), Positives = 55/122 (45%), Gaps = 7/122 (5%)
 Frame = +1

Query: 220 DEPIKETFMRDLRAVGNKFYHVLIPREKTS--LLKEWDLWGPLLLCTLMATILQGSAERA 393
           + P+ E    +L  +  K   VL P + T   ++ + DL GPLL C     IL       
Sbjct: 173 EPPLLEELGLNLDHIWQKTLSVLHPLKPTDQHIMDDTDLGGPLLFCLAFGGILL------ 226

Query: 394 DNSNDGGPEFAEVFVIVWIGA-AVVTINSKLLGGNISFFQSVCVLGYCLFPV----ALAL 558
                G   F  ++    +G  A+  I + +   ++SF   V VLGYCL P+    A+AL
Sbjct: 227 ---LHGKVTFGYIYGYSLLGCIAMYAILNLMSLADVSFSTVVSVLGYCLLPMVGLSAIAL 283

Query: 559 II 564
           I+
Sbjct: 284 IV 285


>SB_53774| Best HMM Match : efhand (HMM E-Value=0.012)
          Length = 918

 Score = 31.1 bits (67), Expect = 0.77
 Identities = 16/57 (28%), Positives = 25/57 (43%)
 Frame = +3

Query: 327 PVGAVTPLHSYGHYPPGLCRKS*QLQRRRTRVC*SICDSLDRGCSCNYQL*TAGWKH 497
           P      + SYG  P    R S  + +   R C ++CD ++   + N +  T  WKH
Sbjct: 146 PATVCDRVRSYGSTPCDRVRPSAIIWKHTMRSCATVCDHMEAHLAINVRPCTVIWKH 202


>SB_20563| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 238

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 16/53 (30%), Positives = 26/53 (49%)
 Frame = -1

Query: 309 TGLFSRNEDMVEFVSDSSEVSHKSLFDRFIQCVKLHVVSTGWPSARYIHFPLN 151
           +GL+ R +D++   S SS      +FD  +   +L VV    P+ R +   LN
Sbjct: 108 SGLYYRTDDIISSASYSSSTQPCIVFDSHLTGRRLRVVFKSHPTPRRLQVALN 160


>SB_34803| Best HMM Match : Pox_A32 (HMM E-Value=3.7)
          Length = 354

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 13/29 (44%), Positives = 20/29 (68%)
 Frame = -2

Query: 473 LIVTTAAPIQTITNTSANSGPPSLELSAL 387
           +I+TT+A I   TNT+ +S P +L LS +
Sbjct: 288 IIITTSAAIPATTNTTQHSSPITLPLSII 316


>SB_39150| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 113

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 13/34 (38%), Positives = 23/34 (67%)
 Frame = +1

Query: 151 IEGEMNIPGRGPSSGDNMEFNTLDEPIKETFMRD 252
           +EG++ +PG   +  ++ E +TLDEP+ ET  R+
Sbjct: 17  VEGDITVPG---APEEDEEPSTLDEPVTETLERN 47


>SB_34910| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2147

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 19/70 (27%), Positives = 33/70 (47%)
 Frame = -2

Query: 584  LNSMMRQMMSARATGNKQ*PRTHTDWKNEMFPPSSLELIVTTAAPIQTITNTSANSGPPS 405
            + S  ++  S++ T   Q  R+         PPS+    VT   P   +T  SA   PPS
Sbjct: 1096 VTSATQESRSSQVTSATQESRSSQVTSATQEPPSTQVTSVTHEPPSSQVT--SATQEPPS 1153

Query: 404  LELSALSAEP 375
             ++++++ EP
Sbjct: 1154 SQVTSVTQEP 1163


>SB_50367| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1498

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +1

Query: 139  DVGVIEGEMNIPGRGPSSGDNMEFNTLDEPIKETFMRD 252
            D GV+EG ++ PG+    G     ++  EP  E   RD
Sbjct: 1000 DTGVLEGVLSQPGQSWDLGTLSVLSSYGEPFMEMLCRD 1037


>SB_26360| Best HMM Match : PKD_channel (HMM E-Value=1.3e-30)
          Length = 3015

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -2

Query: 236 SLIGSSNVLNSMLSPLDGPRPGIFISPSITPTS 138
           +L  +SN+ NS  +P   P  G  + P++ PTS
Sbjct: 56  TLAPTSNIANSTEAPTLAPTEGPTLGPTVAPTS 88


>SB_29339| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1048

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 20/60 (33%), Positives = 30/60 (50%)
 Frame = -2

Query: 509 WKNEMFPPSSLELIVTTAAPIQTITNTSANSGPPSLELSALSAEPWRIVAIRVQRSNGPH 330
           W++ M     L+ IV   AP    T+TSAN     +EL  L  E + ++  RV++S   H
Sbjct: 657 WQDHMHESLKLKTIVKGDAPTSLQTSTSANI---KVELYVL--EAYGLLLFRVEKSKEFH 711


>SB_21496| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1787

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = +2

Query: 215 HWMNRSKRLLCETSELSETNSTMSSFREKRPV 310
           HW  R ++   E  E   + +TM+ F  +RP+
Sbjct: 815 HWGEREEKAFQEIKESISSETTMAYFNPRRPI 846


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,454,084
Number of Sequences: 59808
Number of extensions: 488753
Number of successful extensions: 1437
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1281
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1434
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1572561250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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