BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fmgV12b08f (630 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_51398| Best HMM Match : zf-Tim10_DDP (HMM E-Value=2.7e-28) 60 2e-09 SB_14318| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.012 SB_53774| Best HMM Match : efhand (HMM E-Value=0.012) 31 0.77 SB_20563| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8 SB_34803| Best HMM Match : Pox_A32 (HMM E-Value=3.7) 29 2.4 SB_39150| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1 SB_34910| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1 SB_50367| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.2 SB_26360| Best HMM Match : PKD_channel (HMM E-Value=1.3e-30) 28 7.2 SB_29339| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.5 SB_21496| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.5 >SB_51398| Best HMM Match : zf-Tim10_DDP (HMM E-Value=2.7e-28) Length = 143 Score = 59.7 bits (138), Expect = 2e-09 Identities = 24/42 (57%), Positives = 32/42 (76%) Frame = +1 Query: 499 SFFQSVCVLGYCLFPVALALIICRIILFSAQNTFLFFLRLVI 624 SFFQSVCVLGYC+ P+ ++L +CR+IL + QN LF R V+ Sbjct: 2 SFFQSVCVLGYCILPLDISLTVCRLILLAKQNLALFIARFVV 43 >SB_14318| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 341 Score = 37.1 bits (82), Expect = 0.012 Identities = 36/122 (29%), Positives = 55/122 (45%), Gaps = 7/122 (5%) Frame = +1 Query: 220 DEPIKETFMRDLRAVGNKFYHVLIPREKTS--LLKEWDLWGPLLLCTLMATILQGSAERA 393 + P+ E +L + K VL P + T ++ + DL GPLL C IL Sbjct: 173 EPPLLEELGLNLDHIWQKTLSVLHPLKPTDQHIMDDTDLGGPLLFCLAFGGILL------ 226 Query: 394 DNSNDGGPEFAEVFVIVWIGA-AVVTINSKLLGGNISFFQSVCVLGYCLFPV----ALAL 558 G F ++ +G A+ I + + ++SF V VLGYCL P+ A+AL Sbjct: 227 ---LHGKVTFGYIYGYSLLGCIAMYAILNLMSLADVSFSTVVSVLGYCLLPMVGLSAIAL 283 Query: 559 II 564 I+ Sbjct: 284 IV 285 >SB_53774| Best HMM Match : efhand (HMM E-Value=0.012) Length = 918 Score = 31.1 bits (67), Expect = 0.77 Identities = 16/57 (28%), Positives = 25/57 (43%) Frame = +3 Query: 327 PVGAVTPLHSYGHYPPGLCRKS*QLQRRRTRVC*SICDSLDRGCSCNYQL*TAGWKH 497 P + SYG P R S + + R C ++CD ++ + N + T WKH Sbjct: 146 PATVCDRVRSYGSTPCDRVRPSAIIWKHTMRSCATVCDHMEAHLAINVRPCTVIWKH 202 >SB_20563| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 238 Score = 29.9 bits (64), Expect = 1.8 Identities = 16/53 (30%), Positives = 26/53 (49%) Frame = -1 Query: 309 TGLFSRNEDMVEFVSDSSEVSHKSLFDRFIQCVKLHVVSTGWPSARYIHFPLN 151 +GL+ R +D++ S SS +FD + +L VV P+ R + LN Sbjct: 108 SGLYYRTDDIISSASYSSSTQPCIVFDSHLTGRRLRVVFKSHPTPRRLQVALN 160 >SB_34803| Best HMM Match : Pox_A32 (HMM E-Value=3.7) Length = 354 Score = 29.5 bits (63), Expect = 2.4 Identities = 13/29 (44%), Positives = 20/29 (68%) Frame = -2 Query: 473 LIVTTAAPIQTITNTSANSGPPSLELSAL 387 +I+TT+A I TNT+ +S P +L LS + Sbjct: 288 IIITTSAAIPATTNTTQHSSPITLPLSII 316 >SB_39150| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 113 Score = 29.1 bits (62), Expect = 3.1 Identities = 13/34 (38%), Positives = 23/34 (67%) Frame = +1 Query: 151 IEGEMNIPGRGPSSGDNMEFNTLDEPIKETFMRD 252 +EG++ +PG + ++ E +TLDEP+ ET R+ Sbjct: 17 VEGDITVPG---APEEDEEPSTLDEPVTETLERN 47 >SB_34910| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 2147 Score = 28.7 bits (61), Expect = 4.1 Identities = 19/70 (27%), Positives = 33/70 (47%) Frame = -2 Query: 584 LNSMMRQMMSARATGNKQ*PRTHTDWKNEMFPPSSLELIVTTAAPIQTITNTSANSGPPS 405 + S ++ S++ T Q R+ PPS+ VT P +T SA PPS Sbjct: 1096 VTSATQESRSSQVTSATQESRSSQVTSATQEPPSTQVTSVTHEPPSSQVT--SATQEPPS 1153 Query: 404 LELSALSAEP 375 ++++++ EP Sbjct: 1154 SQVTSVTQEP 1163 >SB_50367| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1498 Score = 27.9 bits (59), Expect = 7.2 Identities = 13/38 (34%), Positives = 19/38 (50%) Frame = +1 Query: 139 DVGVIEGEMNIPGRGPSSGDNMEFNTLDEPIKETFMRD 252 D GV+EG ++ PG+ G ++ EP E RD Sbjct: 1000 DTGVLEGVLSQPGQSWDLGTLSVLSSYGEPFMEMLCRD 1037 >SB_26360| Best HMM Match : PKD_channel (HMM E-Value=1.3e-30) Length = 3015 Score = 27.9 bits (59), Expect = 7.2 Identities = 12/33 (36%), Positives = 19/33 (57%) Frame = -2 Query: 236 SLIGSSNVLNSMLSPLDGPRPGIFISPSITPTS 138 +L +SN+ NS +P P G + P++ PTS Sbjct: 56 TLAPTSNIANSTEAPTLAPTEGPTLGPTVAPTS 88 >SB_29339| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1048 Score = 27.5 bits (58), Expect = 9.5 Identities = 20/60 (33%), Positives = 30/60 (50%) Frame = -2 Query: 509 WKNEMFPPSSLELIVTTAAPIQTITNTSANSGPPSLELSALSAEPWRIVAIRVQRSNGPH 330 W++ M L+ IV AP T+TSAN +EL L E + ++ RV++S H Sbjct: 657 WQDHMHESLKLKTIVKGDAPTSLQTSTSANI---KVELYVL--EAYGLLLFRVEKSKEFH 711 >SB_21496| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1787 Score = 27.5 bits (58), Expect = 9.5 Identities = 10/32 (31%), Positives = 17/32 (53%) Frame = +2 Query: 215 HWMNRSKRLLCETSELSETNSTMSSFREKRPV 310 HW R ++ E E + +TM+ F +RP+ Sbjct: 815 HWGEREEKAFQEIKESISSETTMAYFNPRRPI 846 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 21,454,084 Number of Sequences: 59808 Number of extensions: 488753 Number of successful extensions: 1437 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 1281 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1434 length of database: 16,821,457 effective HSP length: 79 effective length of database: 12,096,625 effective search space used: 1572561250 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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