Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12b08f
         (630 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY344835-1|AAR05806.1|  334|Anopheles gambiae ICHIT protein.           27   0.37 
AY344833-1|AAR05804.1|  334|Anopheles gambiae ICHIT protein.           26   0.86 
AY344832-1|AAR05803.1|  333|Anopheles gambiae ICHIT protein.           26   0.86 
AY344831-1|AAR05802.1|  333|Anopheles gambiae ICHIT protein.           26   0.86 
AY344834-1|AAR05805.1|  334|Anopheles gambiae ICHIT protein.           26   1.1  
AJ439353-8|CAD27930.1| 1039|Anopheles gambiae putative DNA topoi...    25   1.5  
AY239359-1|AAO73809.1| 2259|Anopheles gambiae dicer-1 protein.         25   2.0  
AF313909-1|AAL99382.1| 1024|Anopheles gambiae collagen IV alpha ...    25   2.0  
AY344829-1|AAR05800.1|  334|Anopheles gambiae ICHIT protein.           23   6.1  
AJ010903-1|CAA09389.1|  373|Anopheles gambiae ICHIT protein prot...    23   6.1  
AY344830-1|AAR05801.1|  334|Anopheles gambiae ICHIT protein.           23   8.0  

>AY344835-1|AAR05806.1|  334|Anopheles gambiae ICHIT protein.
          Length = 334

 Score = 27.5 bits (58), Expect = 0.37
 Identities = 14/48 (29%), Positives = 19/48 (39%)
 Frame = -2

Query: 548 ATGNKQ*PRTHTDWKNEMFPPSSLELIVTTAAPIQTITNTSANSGPPS 405
           AT     P T T W ++  PP +         P  TIT     + PP+
Sbjct: 227 ATTTTHAPTTTTTWSDQPPPPPTTTTTTVWTDPTTTITTDYTTAYPPT 274



 Score = 25.8 bits (54), Expect = 1.1
 Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 6/46 (13%)
 Frame = -2

Query: 527 PRTHTDWKNEMFPPSSLELIV------TTAAPIQTITNTSANSGPP 408
           P T T W ++  PP++    V      TT  P  T T T ++  PP
Sbjct: 168 PTTTTTWSDQPPPPTTTTTTVWTDPTATTTTPAPTTTTTWSDLPPP 213


>AY344833-1|AAR05804.1|  334|Anopheles gambiae ICHIT protein.
          Length = 334

 Score = 26.2 bits (55), Expect = 0.86
 Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 6/46 (13%)
 Frame = -2

Query: 527 PRTHTDWKNEMFPPSSLELIV------TTAAPIQTITNTSANSGPP 408
           P T T W ++  PP++    V      TT  P  T T T ++  PP
Sbjct: 168 PTTTTTWSDQPPPPTTTTTTVWTDSTATTTTPASTTTTTWSDLPPP 213



 Score = 23.4 bits (48), Expect = 6.1
 Identities = 13/48 (27%), Positives = 17/48 (35%)
 Frame = -2

Query: 548 ATGNKQ*PRTHTDWKNEMFPPSSLELIVTTAAPIQTITNTSANSGPPS 405
           AT     P T T W +   PP +         P  T T     + PP+
Sbjct: 227 ATTTTHAPTTTTTWSDLPPPPPTTTTTTVWTDPTTTTTTDYTTAYPPT 274


>AY344832-1|AAR05803.1|  333|Anopheles gambiae ICHIT protein.
          Length = 333

 Score = 26.2 bits (55), Expect = 0.86
 Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 6/46 (13%)
 Frame = -2

Query: 527 PRTHTDWKNEMFPPSSLELIV------TTAAPIQTITNTSANSGPP 408
           P T T W ++  PP++    V      TT  P  T T T ++  PP
Sbjct: 167 PTTTTTWSDQPPPPTTTTTTVWTDPTATTTTPASTTTTTWSDLPPP 212



 Score = 23.4 bits (48), Expect = 6.1
 Identities = 13/48 (27%), Positives = 17/48 (35%)
 Frame = -2

Query: 548 ATGNKQ*PRTHTDWKNEMFPPSSLELIVTTAAPIQTITNTSANSGPPS 405
           AT     P T T W +   PP +         P  T T     + PP+
Sbjct: 226 ATTTTHAPTTTTTWSDLPPPPPTTTTTTVWTDPTTTTTTDYTTAYPPT 273


>AY344831-1|AAR05802.1|  333|Anopheles gambiae ICHIT protein.
          Length = 333

 Score = 26.2 bits (55), Expect = 0.86
 Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 6/46 (13%)
 Frame = -2

Query: 527 PRTHTDWKNEMFPPSSLELIV------TTAAPIQTITNTSANSGPP 408
           P T T W ++  PP++    V      TT  P  T T T ++  PP
Sbjct: 167 PTTTTTWSDQPPPPTTTTTTVWTDPTATTTTPASTTTTTWSDLPPP 212



 Score = 23.4 bits (48), Expect = 6.1
 Identities = 13/48 (27%), Positives = 17/48 (35%)
 Frame = -2

Query: 548 ATGNKQ*PRTHTDWKNEMFPPSSLELIVTTAAPIQTITNTSANSGPPS 405
           AT     P T T W +   PP +         P  T T     + PP+
Sbjct: 226 ATTTTHVPTTTTTWSDLPPPPPTTTTTTVWTDPTTTTTTDYTTAYPPT 273


>AY344834-1|AAR05805.1|  334|Anopheles gambiae ICHIT protein.
          Length = 334

 Score = 25.8 bits (54), Expect = 1.1
 Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 6/46 (13%)
 Frame = -2

Query: 527 PRTHTDWKNEMFPPSSLELIV------TTAAPIQTITNTSANSGPP 408
           P T T W ++  PP++    V      TT  P  T T T ++  PP
Sbjct: 168 PTTTTTWSDQPPPPTTTTTTVWTDPTATTTTPAPTTTTTWSDLPPP 213



 Score = 23.4 bits (48), Expect = 6.1
 Identities = 13/48 (27%), Positives = 17/48 (35%)
 Frame = -2

Query: 548 ATGNKQ*PRTHTDWKNEMFPPSSLELIVTTAAPIQTITNTSANSGPPS 405
           AT     P T T W +   PP +         P  T T     + PP+
Sbjct: 227 ATTTTHAPTTTTTWSDLPPPPPTTTTTTVWTDPTTTTTTDYTTAYPPT 274


>AJ439353-8|CAD27930.1| 1039|Anopheles gambiae putative DNA
           topoisomerase protein.
          Length = 1039

 Score = 25.4 bits (53), Expect = 1.5
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -2

Query: 227 GSSNVLNSMLSPLDGPRPGIFISPSITPTSP 135
           GSSN   S  S L+G   G   + + TPT+P
Sbjct: 118 GSSNAALSNSSVLNGSNSGSATTTTTTPTNP 148


>AY239359-1|AAO73809.1| 2259|Anopheles gambiae dicer-1 protein.
          Length = 2259

 Score = 25.0 bits (52), Expect = 2.0
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = -1

Query: 441  YHKYFSKLXXXXXXXXXSFCRALEDSGHKSAKE 343
            +HKYF  L          F R  +++GH+  +E
Sbjct: 2070 FHKYFLHLSPGLQEVIDRFVRIQQENGHRITEE 2102


>AF313909-1|AAL99382.1| 1024|Anopheles gambiae collagen IV alpha 1
           chain protein.
          Length = 1024

 Score = 25.0 bits (52), Expect = 2.0
 Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 4/31 (12%)
 Frame = +1

Query: 115 KYDMYPAGDVG----VIEGEMNIPGRGPSSG 195
           K DM P G+ G    V++GE  +PGR   +G
Sbjct: 529 KGDMGPLGEKGDACPVVKGEKGLPGRPGKTG 559


>AY344829-1|AAR05800.1|  334|Anopheles gambiae ICHIT protein.
          Length = 334

 Score = 23.4 bits (48), Expect = 6.1
 Identities = 13/48 (27%), Positives = 17/48 (35%)
 Frame = -2

Query: 548 ATGNKQ*PRTHTDWKNEMFPPSSLELIVTTAAPIQTITNTSANSGPPS 405
           AT     P T T W +   PP +         P  T T     + PP+
Sbjct: 227 ATTTTHVPTTTTTWSDLPPPPPTTTTTTVWTDPTTTTTTDYTTAYPPT 274



 Score = 23.0 bits (47), Expect = 8.0
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = -2

Query: 527 PRTHTDWKNEMFPPSSLELIVTTAAPIQTITN 432
           P T T W ++  PP++    V T +   T T+
Sbjct: 168 PTTTTTWSDQPRPPTTTTTTVWTDSTATTTTH 199


>AJ010903-1|CAA09389.1|  373|Anopheles gambiae ICHIT protein
           protein.
          Length = 373

 Score = 23.4 bits (48), Expect = 6.1
 Identities = 13/48 (27%), Positives = 17/48 (35%)
 Frame = -2

Query: 548 ATGNKQ*PRTHTDWKNEMFPPSSLELIVTTAAPIQTITNTSANSGPPS 405
           AT     P T T W +   PP +         P  T T     + PP+
Sbjct: 227 ATTTTHAPTTTTTWSDLPPPPPTTTTTTVWTDPTTTTTTDYTTAYPPT 274


>AY344830-1|AAR05801.1|  334|Anopheles gambiae ICHIT protein.
          Length = 334

 Score = 23.0 bits (47), Expect = 8.0
 Identities = 13/48 (27%), Positives = 17/48 (35%)
 Frame = -2

Query: 548 ATGNKQ*PRTHTDWKNEMFPPSSLELIVTTAAPIQTITNTSANSGPPS 405
           AT     P T T W +   PP +         P  T T     + PP+
Sbjct: 227 ATTTTHVPPTTTTWSDLPPPPPTTTTTTVWTDPTTTTTTDYTTAYPPT 274


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 724,550
Number of Sequences: 2352
Number of extensions: 15018
Number of successful extensions: 66
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 61468785
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)