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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12b08f
         (630 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81137-10|CAB03470.2|  232|Caenorhabditis elegans Hypothetical p...   139   2e-33
Z74031-15|CAE45046.1|  261|Caenorhabditis elegans Hypothetical p...    42   3e-04
AL117207-21|CAN99696.1|  255|Caenorhabditis elegans Hypothetical...    40   0.001
AL117207-20|CAB60403.3|  228|Caenorhabditis elegans Hypothetical...    35   0.055
U28737-8|ABA61869.1|  537|Caenorhabditis elegans Hypothetical pr...    31   0.90 
U28737-7|ABA61870.1|  501|Caenorhabditis elegans Hypothetical pr...    31   0.90 
Z99277-2|CAB16487.1|  557|Caenorhabditis elegans Hypothetical pr...    30   1.2  
Z54342-11|CAA91146.1|  502|Caenorhabditis elegans Hypothetical p...    30   1.6  
Z67990-4|CAA91935.1|  369|Caenorhabditis elegans Hypothetical pr...    29   2.1  
U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical p...    28   4.8  
U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical p...    28   4.8  
AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin p...    28   4.8  
Z78417-10|CAB01688.2|  745|Caenorhabditis elegans Hypothetical p...    28   6.3  
Z99281-9|CAB16515.1|  242|Caenorhabditis elegans Hypothetical pr...    27   8.4  
Z81527-14|CAB04278.2|  506|Caenorhabditis elegans Hypothetical p...    27   8.4  
Z79753-8|CAB02089.2|  506|Caenorhabditis elegans Hypothetical pr...    27   8.4  
U97008-7|AAB52313.1|  385|Caenorhabditis elegans Temporarily ass...    27   8.4  
U88179-4|AAU05547.1|  576|Caenorhabditis elegans Hypothetical pr...    27   8.4  
U88179-3|AAX88809.1|  751|Caenorhabditis elegans Hypothetical pr...    27   8.4  
U88179-2|AAU05546.1|  770|Caenorhabditis elegans Hypothetical pr...    27   8.4  

>Z81137-10|CAB03470.2|  232|Caenorhabditis elegans Hypothetical
           protein W02D9.2 protein.
          Length = 232

 Score =  139 bits (336), Expect = 2e-33
 Identities = 69/153 (45%), Positives = 100/153 (65%), Gaps = 3/153 (1%)
 Frame = +1

Query: 178 RGPSSGDNM--EFNTLDEPIKETFMRDLRAVGNKFYHVLIPR-EKTSLLKEWDLWGPLLL 348
           RGP    ++  EF+TL+EP+ +T  RD+  VG KF HV++P  +K  LL++WDLWGPL +
Sbjct: 43  RGPMQEVDLDAEFDTLEEPVWDTVKRDVLTVGAKFTHVVLPHGDKQQLLRDWDLWGPLFI 102

Query: 349 CTLMATILQGSAERADNSNDGGPEFAEVFVIVWIGAAVVTINSKLLGGNISFFQSVCVLG 528
           C  +A +LQ +        +  P+F +VF I + G+ +VT N KLLGGNISFFQS+CV+G
Sbjct: 103 CVGLALLLQHNG-----GTESAPQFTQVFTITFFGSVIVTANIKLLGGNISFFQSLCVIG 157

Query: 529 YCLFPVALALIICRIILFSAQNTFLFFLRLVIS 627
           YCL P  +A ++C + L    +   F LRL+I+
Sbjct: 158 YCLLPPFVAAVLCSLFL----HGIAFPLRLLIT 186


>Z74031-15|CAE45046.1|  261|Caenorhabditis elegans Hypothetical
           protein F32D8.14 protein.
          Length = 261

 Score = 42.3 bits (95), Expect = 3e-04
 Identities = 44/172 (25%), Positives = 73/172 (42%), Gaps = 11/172 (6%)
 Frame = +1

Query: 100 NTFDSKYDMYPAGDVGVIEGEMNIPGRG----PSSG---DNMEFNTLDEPIKETFMRDLR 258
           N +  +   Y         G+M +P  G    P++G   D  ++   + P+ E    +  
Sbjct: 45  NDYYQQNQQYQQPQTNYYGGQMFMPNNGTGAIPNAGVAADGEDYEN-EPPLLEELGINFS 103

Query: 259 AVGNKFYHVLIPREKTSL--LKEWDLWGPLLLCTLM--ATILQGSAERADNSNDGGPEFA 426
            +  K   VL P    ++  + + DL GPL+ C L   A +L G          GG    
Sbjct: 104 HIKEKTIAVLNPTGSATVEVIADQDLAGPLVFCLLFGAALLLHGKLSFGFIYGVGGLGCV 163

Query: 427 EVFVIVWIGAAVVTINSKLLGGNISFFQSVCVLGYCLFPVALALIICRIILF 582
            ++ ++ + A     + K    NISF  +  VLGYCL P+AL  I+  ++ F
Sbjct: 164 GIYALMNLMAT----DEK----NISFTCTASVLGYCLLPMALLSIVTAVLSF 207


>AL117207-21|CAN99696.1|  255|Caenorhabditis elegans Hypothetical
           protein Y60A3A.19b protein.
          Length = 255

 Score = 39.9 bits (89), Expect = 0.001
 Identities = 32/119 (26%), Positives = 55/119 (46%), Gaps = 6/119 (5%)
 Frame = +1

Query: 226 PIKETFMRDLRAVGNKFYHVLIP----REKTSLLKEW-DLWGPLLLCTLMATILQGSAER 390
           P+ E    DL  +  K   VL+P    R K ++++E  D WGPL +    A +       
Sbjct: 87  PLLEELDIDLTDIYYKIRCVLLPLPYFRMKLNIVRESPDFWGPLAVVLAFAIL------- 139

Query: 391 ADNSNDGGPEFAEVFVIVWI-GAAVVTINSKLLGGNISFFQSVCVLGYCLFPVALALII 564
              S  G        + +W  G  +V   ++ LGG++ + Q + ++GYCL P+ +  +I
Sbjct: 140 ---SLYGQFGVVSWIITIWFCGGFMVYFIARALGGDVGYSQVLGIVGYCLIPLVVTSLI 195


>AL117207-20|CAB60403.3|  228|Caenorhabditis elegans Hypothetical
           protein Y60A3A.19a protein.
          Length = 228

 Score = 34.7 bits (76), Expect = 0.055
 Identities = 13/44 (29%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
 Frame = +1

Query: 436 VIVWI-GAAVVTINSKLLGGNISFFQSVCVLGYCLFPVALALII 564
           + +W  G  +V   ++ LGG++ + Q + ++GYCL P+ +  +I
Sbjct: 125 ITIWFCGGFMVYFIARALGGDVGYSQVLGIVGYCLIPLVVTSLI 168


>U28737-8|ABA61869.1|  537|Caenorhabditis elegans Hypothetical
           protein F14B8.5a protein.
          Length = 537

 Score = 30.7 bits (66), Expect = 0.90
 Identities = 17/47 (36%), Positives = 25/47 (53%)
 Frame = +1

Query: 442 VWIGAAVVTINSKLLGGNISFFQSVCVLGYCLFPVALALIICRIILF 582
           V+ GA    +N   +G   +F     VLG CL  +AL LI+C I+ +
Sbjct: 361 VYNGACAAAVNVNNVGVAYAFRTWTIVLG-CLLGIALLLILCLILAY 406


>U28737-7|ABA61870.1|  501|Caenorhabditis elegans Hypothetical
           protein F14B8.5b protein.
          Length = 501

 Score = 30.7 bits (66), Expect = 0.90
 Identities = 17/47 (36%), Positives = 25/47 (53%)
 Frame = +1

Query: 442 VWIGAAVVTINSKLLGGNISFFQSVCVLGYCLFPVALALIICRIILF 582
           V+ GA    +N   +G   +F     VLG CL  +AL LI+C I+ +
Sbjct: 325 VYNGACAAAVNVNNVGVAYAFRTWTIVLG-CLLGIALLLILCLILAY 370


>Z99277-2|CAB16487.1|  557|Caenorhabditis elegans Hypothetical
           protein Y53C12A.3 protein.
          Length = 557

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 32/130 (24%), Positives = 49/130 (37%), Gaps = 4/130 (3%)
 Frame = +1

Query: 250 DLRAVGNKFYHVLIPREKTSLLKEWDLWGPLLLCTLMATIL----QGSAERADNSNDGGP 417
           D   V  +     IPR+ + +    DL+GP +L   M  +L    + S     N    G 
Sbjct: 101 DPAEVRTRLIRSFIPRKPSQIQVSPDLYGPTMLVLTMVALLLYNMKTSGIVIQNGTLMGT 160

Query: 418 EFAEVFVIVWIGAAVVTINSKLLGGNISFFQSVCVLGYCLFPVALALIICRIILFSAQNT 597
                F    + +  + I   LL     F   +   GY L    L L++    LF + + 
Sbjct: 161 AMFTCFGSWMLISGALWIACFLLAAEQPFLTILSSFGYSLTSQCLVLLLTS--LFHSSHD 218

Query: 598 FLFFLRLVIS 627
            LFF  L+ S
Sbjct: 219 HLFFFVLLAS 228


>Z54342-11|CAA91146.1|  502|Caenorhabditis elegans Hypothetical
           protein C08H9.5 protein.
          Length = 502

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 13/23 (56%), Positives = 19/23 (82%)
 Frame = +1

Query: 514 VCVLGYCLFPVALALIICRIILF 582
           + +L YCLF VALA++IC +I+F
Sbjct: 76  IFILLYCLF-VALAILICGLIIF 97


>Z67990-4|CAA91935.1|  369|Caenorhabditis elegans Hypothetical
           protein F02D10.4 protein.
          Length = 369

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 5/63 (7%)
 Frame = -1

Query: 624 YD*PQEE*EGVLRTEQYDAAD-DEREGHREQT----VAENAHRLEE*NVSTQQFRVDSYN 460
           YD P  +  G   TEQYD  D   +  H  Q     V+EN  R E  +++  + + D   
Sbjct: 97  YDTPGRQENGGRYTEQYDTVDQSSKREHLSQRYGDHVSENNSRTEYKSINNGESKTDRDC 156

Query: 459 CSP 451
           C P
Sbjct: 157 CGP 159


>U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical protein
             K07E12.1b protein.
          Length = 12268

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +3

Query: 300   KDQSFKRMGPVGAVTPLHSYGHY 368
             KD+  K +GP G V P  S GHY
Sbjct: 10420 KDEEGKPVGPDGQVLPTDSAGHY 10442


>U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical protein
             K07E12.1a protein.
          Length = 13100

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +3

Query: 300   KDQSFKRMGPVGAVTPLHSYGHY 368
             KD+  K +GP G V P  S GHY
Sbjct: 10465 KDEEGKPVGPDGQVLPTDSAGHY 10487


>AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin protein.
          Length = 13100

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +3

Query: 300   KDQSFKRMGPVGAVTPLHSYGHY 368
             KD+  K +GP G V P  S GHY
Sbjct: 10465 KDEEGKPVGPDGQVLPTDSAGHY 10487


>Z78417-10|CAB01688.2|  745|Caenorhabditis elegans Hypothetical
           protein C35C5.2 protein.
          Length = 745

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +1

Query: 409 GGPEFAEVFVIVWIGAAVVTINSKLLGGN 495
           G  EFAE + +  +  AV  IN  L+GGN
Sbjct: 415 GSTEFAEEYRLQLMRRAVAVINMDLIGGN 443


>Z99281-9|CAB16515.1|  242|Caenorhabditis elegans Hypothetical
           protein Y57G11C.14 protein.
          Length = 242

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 18/67 (26%), Positives = 28/67 (41%), Gaps = 1/67 (1%)
 Frame = +1

Query: 28  CVGE-IK*NYKTHILFNS*INNIEMNTFDSKYDMYPAGDVGVIEGEMNIPGRGPSSGDNM 204
           C+ E +K + K  I+FN  + + E   FD     Y + D GV+E   +     P    + 
Sbjct: 80  CMDETLKNSSKPRIIFNKQLGHAESIDFDVPSLSYESSDKGVVESTTSTSVSNPKKTTSS 139

Query: 205 EFNTLDE 225
              T  E
Sbjct: 140 SMFTKSE 146


>Z81527-14|CAB04278.2|  506|Caenorhabditis elegans Hypothetical
           protein F35E12.8 protein.
          Length = 506

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = -2

Query: 221 SNVLNSMLSPLDGPRPGIFISPSITPTSPAGYMSYFESNVFISILF 84
           S+  ++ L+P +G +  IF S   TP + +GY   F S   ++  F
Sbjct: 347 SSTADNWLTPYNGRKGSIFSSSLWTPEATSGYNHTFVSTNVMTFTF 392


>Z79753-8|CAB02089.2|  506|Caenorhabditis elegans Hypothetical
           protein F35E12.8 protein.
          Length = 506

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = -2

Query: 221 SNVLNSMLSPLDGPRPGIFISPSITPTSPAGYMSYFESNVFISILF 84
           S+  ++ L+P +G +  IF S   TP + +GY   F S   ++  F
Sbjct: 347 SSTADNWLTPYNGRKGSIFSSSLWTPEATSGYNHTFVSTNVMTFTF 392


>U97008-7|AAB52313.1|  385|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 293 protein.
          Length = 385

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 21/70 (30%), Positives = 34/70 (48%)
 Frame = +1

Query: 268 NKFYHVLIPREKTSLLKEWDLWGPLLLCTLMATILQGSAERADNSNDGGPEFAEVFVIVW 447
           +KF + +I   ++S L+  D++G L+ C L  T+ + +   AD S D           VW
Sbjct: 116 DKFIYTVIIFTQSSSLRLSDMFGLLVSCILAFTVPESAF--ADISGDLNCTQYNGTFFVW 173

Query: 448 IGAAVVTINS 477
             AAV   N+
Sbjct: 174 TPAAVACSNA 183


>U88179-4|AAU05547.1|  576|Caenorhabditis elegans Hypothetical
           protein R57.1b protein.
          Length = 576

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 15/31 (48%), Positives = 17/31 (54%)
 Frame = +1

Query: 409 GGPEFAEVFVIVWIGAAVVTINSKLLGGNIS 501
           G  EF E FV +    AVV IN   + GNIS
Sbjct: 422 GSTEFVEEFVNILQKRAVVYINMDCIQGNIS 452


>U88179-3|AAX88809.1|  751|Caenorhabditis elegans Hypothetical
           protein R57.1c protein.
          Length = 751

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 15/31 (48%), Positives = 17/31 (54%)
 Frame = +1

Query: 409 GGPEFAEVFVIVWIGAAVVTINSKLLGGNIS 501
           G  EF E FV +    AVV IN   + GNIS
Sbjct: 422 GSTEFVEEFVNILQKRAVVYINMDCIQGNIS 452


>U88179-2|AAU05546.1|  770|Caenorhabditis elegans Hypothetical
           protein R57.1a protein.
          Length = 770

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 15/31 (48%), Positives = 17/31 (54%)
 Frame = +1

Query: 409 GGPEFAEVFVIVWIGAAVVTINSKLLGGNIS 501
           G  EF E FV +    AVV IN   + GNIS
Sbjct: 441 GSTEFVEEFVNILQKRAVVYINMDCIQGNIS 471


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,909,279
Number of Sequences: 27780
Number of extensions: 363930
Number of successful extensions: 1365
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1362
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1385109898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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