BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fmgV12b08f (630 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Z81137-10|CAB03470.2| 232|Caenorhabditis elegans Hypothetical p... 139 2e-33 Z74031-15|CAE45046.1| 261|Caenorhabditis elegans Hypothetical p... 42 3e-04 AL117207-21|CAN99696.1| 255|Caenorhabditis elegans Hypothetical... 40 0.001 AL117207-20|CAB60403.3| 228|Caenorhabditis elegans Hypothetical... 35 0.055 U28737-8|ABA61869.1| 537|Caenorhabditis elegans Hypothetical pr... 31 0.90 U28737-7|ABA61870.1| 501|Caenorhabditis elegans Hypothetical pr... 31 0.90 Z99277-2|CAB16487.1| 557|Caenorhabditis elegans Hypothetical pr... 30 1.2 Z54342-11|CAA91146.1| 502|Caenorhabditis elegans Hypothetical p... 30 1.6 Z67990-4|CAA91935.1| 369|Caenorhabditis elegans Hypothetical pr... 29 2.1 U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical p... 28 4.8 U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical p... 28 4.8 AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin p... 28 4.8 Z78417-10|CAB01688.2| 745|Caenorhabditis elegans Hypothetical p... 28 6.3 Z99281-9|CAB16515.1| 242|Caenorhabditis elegans Hypothetical pr... 27 8.4 Z81527-14|CAB04278.2| 506|Caenorhabditis elegans Hypothetical p... 27 8.4 Z79753-8|CAB02089.2| 506|Caenorhabditis elegans Hypothetical pr... 27 8.4 U97008-7|AAB52313.1| 385|Caenorhabditis elegans Temporarily ass... 27 8.4 U88179-4|AAU05547.1| 576|Caenorhabditis elegans Hypothetical pr... 27 8.4 U88179-3|AAX88809.1| 751|Caenorhabditis elegans Hypothetical pr... 27 8.4 U88179-2|AAU05546.1| 770|Caenorhabditis elegans Hypothetical pr... 27 8.4 >Z81137-10|CAB03470.2| 232|Caenorhabditis elegans Hypothetical protein W02D9.2 protein. Length = 232 Score = 139 bits (336), Expect = 2e-33 Identities = 69/153 (45%), Positives = 100/153 (65%), Gaps = 3/153 (1%) Frame = +1 Query: 178 RGPSSGDNM--EFNTLDEPIKETFMRDLRAVGNKFYHVLIPR-EKTSLLKEWDLWGPLLL 348 RGP ++ EF+TL+EP+ +T RD+ VG KF HV++P +K LL++WDLWGPL + Sbjct: 43 RGPMQEVDLDAEFDTLEEPVWDTVKRDVLTVGAKFTHVVLPHGDKQQLLRDWDLWGPLFI 102 Query: 349 CTLMATILQGSAERADNSNDGGPEFAEVFVIVWIGAAVVTINSKLLGGNISFFQSVCVLG 528 C +A +LQ + + P+F +VF I + G+ +VT N KLLGGNISFFQS+CV+G Sbjct: 103 CVGLALLLQHNG-----GTESAPQFTQVFTITFFGSVIVTANIKLLGGNISFFQSLCVIG 157 Query: 529 YCLFPVALALIICRIILFSAQNTFLFFLRLVIS 627 YCL P +A ++C + L + F LRL+I+ Sbjct: 158 YCLLPPFVAAVLCSLFL----HGIAFPLRLLIT 186 >Z74031-15|CAE45046.1| 261|Caenorhabditis elegans Hypothetical protein F32D8.14 protein. Length = 261 Score = 42.3 bits (95), Expect = 3e-04 Identities = 44/172 (25%), Positives = 73/172 (42%), Gaps = 11/172 (6%) Frame = +1 Query: 100 NTFDSKYDMYPAGDVGVIEGEMNIPGRG----PSSG---DNMEFNTLDEPIKETFMRDLR 258 N + + Y G+M +P G P++G D ++ + P+ E + Sbjct: 45 NDYYQQNQQYQQPQTNYYGGQMFMPNNGTGAIPNAGVAADGEDYEN-EPPLLEELGINFS 103 Query: 259 AVGNKFYHVLIPREKTSL--LKEWDLWGPLLLCTLM--ATILQGSAERADNSNDGGPEFA 426 + K VL P ++ + + DL GPL+ C L A +L G GG Sbjct: 104 HIKEKTIAVLNPTGSATVEVIADQDLAGPLVFCLLFGAALLLHGKLSFGFIYGVGGLGCV 163 Query: 427 EVFVIVWIGAAVVTINSKLLGGNISFFQSVCVLGYCLFPVALALIICRIILF 582 ++ ++ + A + K NISF + VLGYCL P+AL I+ ++ F Sbjct: 164 GIYALMNLMAT----DEK----NISFTCTASVLGYCLLPMALLSIVTAVLSF 207 >AL117207-21|CAN99696.1| 255|Caenorhabditis elegans Hypothetical protein Y60A3A.19b protein. Length = 255 Score = 39.9 bits (89), Expect = 0.001 Identities = 32/119 (26%), Positives = 55/119 (46%), Gaps = 6/119 (5%) Frame = +1 Query: 226 PIKETFMRDLRAVGNKFYHVLIP----REKTSLLKEW-DLWGPLLLCTLMATILQGSAER 390 P+ E DL + K VL+P R K ++++E D WGPL + A + Sbjct: 87 PLLEELDIDLTDIYYKIRCVLLPLPYFRMKLNIVRESPDFWGPLAVVLAFAIL------- 139 Query: 391 ADNSNDGGPEFAEVFVIVWI-GAAVVTINSKLLGGNISFFQSVCVLGYCLFPVALALII 564 S G + +W G +V ++ LGG++ + Q + ++GYCL P+ + +I Sbjct: 140 ---SLYGQFGVVSWIITIWFCGGFMVYFIARALGGDVGYSQVLGIVGYCLIPLVVTSLI 195 >AL117207-20|CAB60403.3| 228|Caenorhabditis elegans Hypothetical protein Y60A3A.19a protein. Length = 228 Score = 34.7 bits (76), Expect = 0.055 Identities = 13/44 (29%), Positives = 27/44 (61%), Gaps = 1/44 (2%) Frame = +1 Query: 436 VIVWI-GAAVVTINSKLLGGNISFFQSVCVLGYCLFPVALALII 564 + +W G +V ++ LGG++ + Q + ++GYCL P+ + +I Sbjct: 125 ITIWFCGGFMVYFIARALGGDVGYSQVLGIVGYCLIPLVVTSLI 168 >U28737-8|ABA61869.1| 537|Caenorhabditis elegans Hypothetical protein F14B8.5a protein. Length = 537 Score = 30.7 bits (66), Expect = 0.90 Identities = 17/47 (36%), Positives = 25/47 (53%) Frame = +1 Query: 442 VWIGAAVVTINSKLLGGNISFFQSVCVLGYCLFPVALALIICRIILF 582 V+ GA +N +G +F VLG CL +AL LI+C I+ + Sbjct: 361 VYNGACAAAVNVNNVGVAYAFRTWTIVLG-CLLGIALLLILCLILAY 406 >U28737-7|ABA61870.1| 501|Caenorhabditis elegans Hypothetical protein F14B8.5b protein. Length = 501 Score = 30.7 bits (66), Expect = 0.90 Identities = 17/47 (36%), Positives = 25/47 (53%) Frame = +1 Query: 442 VWIGAAVVTINSKLLGGNISFFQSVCVLGYCLFPVALALIICRIILF 582 V+ GA +N +G +F VLG CL +AL LI+C I+ + Sbjct: 325 VYNGACAAAVNVNNVGVAYAFRTWTIVLG-CLLGIALLLILCLILAY 370 >Z99277-2|CAB16487.1| 557|Caenorhabditis elegans Hypothetical protein Y53C12A.3 protein. Length = 557 Score = 30.3 bits (65), Expect = 1.2 Identities = 32/130 (24%), Positives = 49/130 (37%), Gaps = 4/130 (3%) Frame = +1 Query: 250 DLRAVGNKFYHVLIPREKTSLLKEWDLWGPLLLCTLMATIL----QGSAERADNSNDGGP 417 D V + IPR+ + + DL+GP +L M +L + S N G Sbjct: 101 DPAEVRTRLIRSFIPRKPSQIQVSPDLYGPTMLVLTMVALLLYNMKTSGIVIQNGTLMGT 160 Query: 418 EFAEVFVIVWIGAAVVTINSKLLGGNISFFQSVCVLGYCLFPVALALIICRIILFSAQNT 597 F + + + I LL F + GY L L L++ LF + + Sbjct: 161 AMFTCFGSWMLISGALWIACFLLAAEQPFLTILSSFGYSLTSQCLVLLLTS--LFHSSHD 218 Query: 598 FLFFLRLVIS 627 LFF L+ S Sbjct: 219 HLFFFVLLAS 228 >Z54342-11|CAA91146.1| 502|Caenorhabditis elegans Hypothetical protein C08H9.5 protein. Length = 502 Score = 29.9 bits (64), Expect = 1.6 Identities = 13/23 (56%), Positives = 19/23 (82%) Frame = +1 Query: 514 VCVLGYCLFPVALALIICRIILF 582 + +L YCLF VALA++IC +I+F Sbjct: 76 IFILLYCLF-VALAILICGLIIF 97 >Z67990-4|CAA91935.1| 369|Caenorhabditis elegans Hypothetical protein F02D10.4 protein. Length = 369 Score = 29.5 bits (63), Expect = 2.1 Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 5/63 (7%) Frame = -1 Query: 624 YD*PQEE*EGVLRTEQYDAAD-DEREGHREQT----VAENAHRLEE*NVSTQQFRVDSYN 460 YD P + G TEQYD D + H Q V+EN R E +++ + + D Sbjct: 97 YDTPGRQENGGRYTEQYDTVDQSSKREHLSQRYGDHVSENNSRTEYKSINNGESKTDRDC 156 Query: 459 CSP 451 C P Sbjct: 157 CGP 159 >U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical protein K07E12.1b protein. Length = 12268 Score = 28.3 bits (60), Expect = 4.8 Identities = 12/23 (52%), Positives = 14/23 (60%) Frame = +3 Query: 300 KDQSFKRMGPVGAVTPLHSYGHY 368 KD+ K +GP G V P S GHY Sbjct: 10420 KDEEGKPVGPDGQVLPTDSAGHY 10442 >U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical protein K07E12.1a protein. Length = 13100 Score = 28.3 bits (60), Expect = 4.8 Identities = 12/23 (52%), Positives = 14/23 (60%) Frame = +3 Query: 300 KDQSFKRMGPVGAVTPLHSYGHY 368 KD+ K +GP G V P S GHY Sbjct: 10465 KDEEGKPVGPDGQVLPTDSAGHY 10487 >AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin protein. Length = 13100 Score = 28.3 bits (60), Expect = 4.8 Identities = 12/23 (52%), Positives = 14/23 (60%) Frame = +3 Query: 300 KDQSFKRMGPVGAVTPLHSYGHY 368 KD+ K +GP G V P S GHY Sbjct: 10465 KDEEGKPVGPDGQVLPTDSAGHY 10487 >Z78417-10|CAB01688.2| 745|Caenorhabditis elegans Hypothetical protein C35C5.2 protein. Length = 745 Score = 27.9 bits (59), Expect = 6.3 Identities = 13/29 (44%), Positives = 17/29 (58%) Frame = +1 Query: 409 GGPEFAEVFVIVWIGAAVVTINSKLLGGN 495 G EFAE + + + AV IN L+GGN Sbjct: 415 GSTEFAEEYRLQLMRRAVAVINMDLIGGN 443 >Z99281-9|CAB16515.1| 242|Caenorhabditis elegans Hypothetical protein Y57G11C.14 protein. Length = 242 Score = 27.5 bits (58), Expect = 8.4 Identities = 18/67 (26%), Positives = 28/67 (41%), Gaps = 1/67 (1%) Frame = +1 Query: 28 CVGE-IK*NYKTHILFNS*INNIEMNTFDSKYDMYPAGDVGVIEGEMNIPGRGPSSGDNM 204 C+ E +K + K I+FN + + E FD Y + D GV+E + P + Sbjct: 80 CMDETLKNSSKPRIIFNKQLGHAESIDFDVPSLSYESSDKGVVESTTSTSVSNPKKTTSS 139 Query: 205 EFNTLDE 225 T E Sbjct: 140 SMFTKSE 146 >Z81527-14|CAB04278.2| 506|Caenorhabditis elegans Hypothetical protein F35E12.8 protein. Length = 506 Score = 27.5 bits (58), Expect = 8.4 Identities = 14/46 (30%), Positives = 24/46 (52%) Frame = -2 Query: 221 SNVLNSMLSPLDGPRPGIFISPSITPTSPAGYMSYFESNVFISILF 84 S+ ++ L+P +G + IF S TP + +GY F S ++ F Sbjct: 347 SSTADNWLTPYNGRKGSIFSSSLWTPEATSGYNHTFVSTNVMTFTF 392 >Z79753-8|CAB02089.2| 506|Caenorhabditis elegans Hypothetical protein F35E12.8 protein. Length = 506 Score = 27.5 bits (58), Expect = 8.4 Identities = 14/46 (30%), Positives = 24/46 (52%) Frame = -2 Query: 221 SNVLNSMLSPLDGPRPGIFISPSITPTSPAGYMSYFESNVFISILF 84 S+ ++ L+P +G + IF S TP + +GY F S ++ F Sbjct: 347 SSTADNWLTPYNGRKGSIFSSSLWTPEATSGYNHTFVSTNVMTFTF 392 >U97008-7|AAB52313.1| 385|Caenorhabditis elegans Temporarily assigned gene nameprotein 293 protein. Length = 385 Score = 27.5 bits (58), Expect = 8.4 Identities = 21/70 (30%), Positives = 34/70 (48%) Frame = +1 Query: 268 NKFYHVLIPREKTSLLKEWDLWGPLLLCTLMATILQGSAERADNSNDGGPEFAEVFVIVW 447 +KF + +I ++S L+ D++G L+ C L T+ + + AD S D VW Sbjct: 116 DKFIYTVIIFTQSSSLRLSDMFGLLVSCILAFTVPESAF--ADISGDLNCTQYNGTFFVW 173 Query: 448 IGAAVVTINS 477 AAV N+ Sbjct: 174 TPAAVACSNA 183 >U88179-4|AAU05547.1| 576|Caenorhabditis elegans Hypothetical protein R57.1b protein. Length = 576 Score = 27.5 bits (58), Expect = 8.4 Identities = 15/31 (48%), Positives = 17/31 (54%) Frame = +1 Query: 409 GGPEFAEVFVIVWIGAAVVTINSKLLGGNIS 501 G EF E FV + AVV IN + GNIS Sbjct: 422 GSTEFVEEFVNILQKRAVVYINMDCIQGNIS 452 >U88179-3|AAX88809.1| 751|Caenorhabditis elegans Hypothetical protein R57.1c protein. Length = 751 Score = 27.5 bits (58), Expect = 8.4 Identities = 15/31 (48%), Positives = 17/31 (54%) Frame = +1 Query: 409 GGPEFAEVFVIVWIGAAVVTINSKLLGGNIS 501 G EF E FV + AVV IN + GNIS Sbjct: 422 GSTEFVEEFVNILQKRAVVYINMDCIQGNIS 452 >U88179-2|AAU05546.1| 770|Caenorhabditis elegans Hypothetical protein R57.1a protein. Length = 770 Score = 27.5 bits (58), Expect = 8.4 Identities = 15/31 (48%), Positives = 17/31 (54%) Frame = +1 Query: 409 GGPEFAEVFVIVWIGAAVVTINSKLLGGNIS 501 G EF E FV + AVV IN + GNIS Sbjct: 441 GSTEFVEEFVNILQKRAVVYINMDCIQGNIS 471 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 15,909,279 Number of Sequences: 27780 Number of extensions: 363930 Number of successful extensions: 1365 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 1140 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1362 length of database: 12,740,198 effective HSP length: 78 effective length of database: 10,573,358 effective search space used: 1385109898 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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