Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12b08f
         (630 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    23   1.9  
AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    23   3.2  
AY526235-1|AAS20468.1|  169|Apis mellifera esterase protein.           23   3.2  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           23   3.2  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    22   5.7  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    22   5.7  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    22   5.7  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                22   5.7  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   9.9  

>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = +1

Query: 439 IVWIGAAVVTINSKLLGGN 495
           +VW+GAA +++   L+ GN
Sbjct: 164 LVWLGAACISLPPLLIMGN 182


>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +2

Query: 443 FGSGLQL*LSTLNCWVETFHS 505
           F  G+ +  + LNCW +T +S
Sbjct: 228 FQGGISISGTALNCWTQTENS 248


>AY526235-1|AAS20468.1|  169|Apis mellifera esterase protein.
          Length = 169

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +2

Query: 443 FGSGLQL*LSTLNCWVETFHS 505
           F  G+ +  + LNCW +T +S
Sbjct: 99  FQGGISISGTALNCWTQTENS 119


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +2

Query: 443 FGSGLQL*LSTLNCWVETFHS 505
           F  G+ +  + LNCW +T +S
Sbjct: 228 FQGGISISGTALNCWTQTENS 248


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = -1

Query: 147 SHISRWIHVVFRVKRIHFNIIYLRIE*NVSLIV 49
           S I ++  +VF V  + FN++Y  I  ++S +V
Sbjct: 402 SDIDKYSRIVFPVCFVCFNLMYWIIYLHISDVV 434


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = -1

Query: 147 SHISRWIHVVFRVKRIHFNIIYLRIE*NVSLIV 49
           S I ++  +VF V  + FN++Y  I  ++S +V
Sbjct: 402 SDIDKYSRIVFPVCFVCFNLMYWIIYLHISDVV 434


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = +3

Query: 306 QSFKRMGPVGAVTPLHSYGHYPP 374
           +S    G  G +TP+  YG+  P
Sbjct: 308 ESLSTSGSSGILTPVSPYGYVKP 330


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +3

Query: 546 GPRAHHLPHHTVQCAEHL 599
           GP  HH  HH  Q  +HL
Sbjct: 348 GPPHHH-HHHQTQSLQHL 364


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -2

Query: 425 ANSGPPSLELSALSAEP 375
           +  GPPS+ LS+   EP
Sbjct: 126 SRDGPPSVSLSSPPREP 142


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 193,586
Number of Sequences: 438
Number of extensions: 4722
Number of successful extensions: 10
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18826962
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)