BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fmgV12b08f (630 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At4g30260.1 68417.m04302 integral membrane Yip1 family protein c... 91 7e-19 At2g18840.1 68415.m02194 integral membrane Yip1 family protein c... 89 2e-18 At1g23935.1 68414.m03020 apoptosis inhibitory protein 5 (API5)-r... 30 1.1 At4g27720.1 68417.m03984 expressed protein contains Pfam PF05631... 29 3.4 At4g03110.2 68417.m00421 RNA-binding protein, putative similar t... 29 3.4 At1g65440.1 68414.m07424 glycine-rich protein 29 3.4 At4g31840.1 68417.m04524 plastocyanin-like domain-containing pro... 28 4.4 At4g22550.1 68417.m03255 phosphatidic acid phosphatase-related /... 28 4.4 At4g04670.1 68417.m00683 Met-10+ like family protein / kelch rep... 28 5.9 At1g71110.1 68414.m08206 expressed protein 28 5.9 At1g10470.1 68414.m01179 two-component responsive regulator / re... 28 5.9 At1g50610.1 68414.m05685 leucine-rich repeat transmembrane prote... 27 7.8 >At4g30260.1 68417.m04302 integral membrane Yip1 family protein contains Pfam domain, PF04893: Yip1 domain Length = 280 Score = 90.6 bits (215), Expect = 7e-19 Identities = 53/144 (36%), Positives = 75/144 (52%), Gaps = 4/144 (2%) Frame = +1 Query: 154 EGEMNIPGRGPSSGDNMEFNTLDEPIKETFMRDLRAVGNKFYHVLIPR----EKTSLLKE 321 EG +I G G S N TL EP+ +T RDL + + V+ P + L++ Sbjct: 89 EGNKSIGGSGFGSPPN----TLTEPVWDTVKRDLSRIVSNLKLVVFPNPYREDPGKALRD 144 Query: 322 WDLWGPLLLCTLMATILQGSAERADNSNDGGPEFAEVFVIVWIGAAVVTINSKLLGGNIS 501 WDLWGP + L SA S FA F ++ GA ++T+N LLGG+I Sbjct: 145 WDLWGPFFFIVFLGLTLSWSA-----SVKKSEVFAVAFALLAAGAVILTLNVLLLGGHII 199 Query: 502 FFQSVCVLGYCLFPVALALIICRI 573 FFQS+ +LGYCLFP+ + +IC + Sbjct: 200 FFQSLSLLGYCLFPLDVGAVICML 223 >At2g18840.1 68415.m02194 integral membrane Yip1 family protein contains Pfam domain, PF04893: Yip1 domain Length = 281 Score = 89.0 bits (211), Expect = 2e-18 Identities = 47/125 (37%), Positives = 68/125 (54%), Gaps = 4/125 (3%) Frame = +1 Query: 211 NTLDEPIKETFMRDLRAVGNKFYHVLIPR----EKTSLLKEWDLWGPLLLCTLMATILQG 378 NTL EP+ +T RDL + + V+ P + L++WDLWGP + L Sbjct: 105 NTLTEPVWDTVKRDLSRIVSNLKLVVFPNPYREDPGKALRDWDLWGPFFFIVFLGLTLSW 164 Query: 379 SAERADNSNDGGPEFAEVFVIVWIGAAVVTINSKLLGGNISFFQSVCVLGYCLFPVALAL 558 SA S FA F ++ GA ++T+N LLGG+I FFQS+ +LGYCLFP+ + Sbjct: 165 SA-----SVKKSEVFAVAFALLAAGAVILTLNVLLLGGHIIFFQSLSLLGYCLFPLDVGA 219 Query: 559 IICRI 573 +IC + Sbjct: 220 VICML 224 >At1g23935.1 68414.m03020 apoptosis inhibitory protein 5 (API5)-related contains weak hit to Pfam profile PF05918: Apoptosis inhibitory protein 5 (API5) Length = 660 Score = 30.3 bits (65), Expect = 1.1 Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 2/44 (4%) Frame = -1 Query: 264 DSSEVSHKSLFDRFIQCVKLHV--VSTGWPSARYIHFPLNYSHI 139 D+ +VS DRFI C+ + V + G PS++Y F +N HI Sbjct: 114 DTFDVSDAHYVDRFISCLLMAVPFFARGAPSSKYFEF-MNRHHI 156 >At4g27720.1 68417.m03984 expressed protein contains Pfam PF05631: Protein of unknown function (DUF791) Length = 460 Score = 28.7 bits (61), Expect = 3.4 Identities = 14/39 (35%), Positives = 21/39 (53%) Frame = +1 Query: 475 SKLLGGNISFFQSVCVLGYCLFPVALALIICRIILFSAQ 591 SK+ GG ISF +LG+C+F + L I+ +Q Sbjct: 340 SKVKGGGISFSGCFQLLGFCIFEACVGLFWPSIMKMRSQ 378 >At4g03110.2 68417.m00421 RNA-binding protein, putative similar to Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3 like factor 3 [Homo sapiens] GI:12746392; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 439 Score = 28.7 bits (61), Expect = 3.4 Identities = 14/51 (27%), Positives = 24/51 (47%) Frame = +3 Query: 225 TDQRDFYARPQSCRKQILPCPHSERKDQSFKRMGPVGAVTPLHSYGHYPPG 377 T++ R Q + I + + + S P+G V P + YG++PPG Sbjct: 186 TERERHTRRLQKAQSHIARLGNGDPTNPSLFGALPMGYVPPYNGYGYHPPG 236 >At1g65440.1 68414.m07424 glycine-rich protein Length = 1647 Score = 28.7 bits (61), Expect = 3.4 Identities = 12/30 (40%), Positives = 21/30 (70%), Gaps = 1/30 (3%) Frame = +1 Query: 94 EMNTFDSKYDM-YPAGDVGVIEGEMNIPGR 180 E++ DSK+++ +P G++GV EG+ P R Sbjct: 440 EVDDVDSKFNLHFPPGEIGVDEGQYKRPKR 469 >At4g31840.1 68417.m04524 plastocyanin-like domain-containing protein Length = 177 Score = 28.3 bits (60), Expect = 4.4 Identities = 17/44 (38%), Positives = 24/44 (54%) Frame = -2 Query: 209 NSMLSPLDGPRPGIFISPSITPTSPAGYMSYFESNVFISILFIY 78 NS SP GP P F P++ PTS A ++ S VF +L ++ Sbjct: 132 NSAFSP--GPSPSEFDGPAVAPTSGAAKLAGGFSVVFGLVLGLW 173 >At4g22550.1 68417.m03255 phosphatidic acid phosphatase-related / PAP2-related contains Pfam profile PF01569: PAP2 superfamily Length = 213 Score = 28.3 bits (60), Expect = 4.4 Identities = 15/29 (51%), Positives = 18/29 (62%) Frame = +1 Query: 403 NDGGPEFAEVFVIVWIGAAVVTINSKLLG 489 NDG + EV V+VWI A V I+ LLG Sbjct: 152 NDGDVK-VEVVVVVWIWATVTAISRILLG 179 >At4g04670.1 68417.m00683 Met-10+ like family protein / kelch repeat-containing protein contains Pfam profiles PF01344: Kelch motif, PF02475: Met-10+ like-protein Length = 995 Score = 27.9 bits (59), Expect = 5.9 Identities = 11/23 (47%), Positives = 13/23 (56%) Frame = -1 Query: 210 KLHVVSTGWPSARYIHFPLNYSH 142 KL V+S WP AR+ H Y H Sbjct: 464 KLEVISGKWPHARFSHSMFVYKH 486 >At1g71110.1 68414.m08206 expressed protein Length = 513 Score = 27.9 bits (59), Expect = 5.9 Identities = 14/26 (53%), Positives = 18/26 (69%), Gaps = 1/26 (3%) Frame = +3 Query: 240 FYA-RPQSCRKQILPCPHSERKDQSF 314 FYA RPQ R+++ PH +RKD SF Sbjct: 470 FYANRPQ--REEVFADPHPQRKDDSF 493 >At1g10470.1 68414.m01179 two-component responsive regulator / response regulator 4 (ARR4) identical to responce regulator1 GI:3273195 from [Arabidopsis thaliana]; identical to cDNA ARR4 mRNA for response regulator 4 GI:3953596 Length = 259 Score = 27.9 bits (59), Expect = 5.9 Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 1/59 (1%) Frame = -2 Query: 548 ATGNKQ*PRTHTDWKNEMFPPSSLELIVTT-AAPIQTITNTSANSGPPSLELSALSAEP 375 + GNK+ + N PP S L ++ ++P T++ S++S PP + S P Sbjct: 168 SNGNKRKLPEDSSSVNSSLPPPSPPLTISPESSPPLTVSTESSDSSPPLSPVEIFSTSP 226 >At1g50610.1 68414.m05685 leucine-rich repeat transmembrane protein kinase, putative similar to receptor-like protein kinase GB:AAC12254 GI:3015488 from [Lycopersicon esculentum] Length = 686 Score = 27.5 bits (58), Expect = 7.8 Identities = 13/44 (29%), Positives = 23/44 (52%) Frame = -2 Query: 266 PTALRSRIKVSLIGSSNVLNSMLSPLDGPRPGIFISPSITPTSP 135 P +LR+ S G+ + ++ LSP PG+ + P ++P P Sbjct: 224 PESLRNMDPGSFAGNKGLCDAPLSPCSSSSPGVPVVP-VSPVDP 266 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 14,847,453 Number of Sequences: 28952 Number of extensions: 334293 Number of successful extensions: 986 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 946 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 982 length of database: 12,070,560 effective HSP length: 78 effective length of database: 9,812,304 effective search space used: 1285411824 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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