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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12b08f
         (630 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g30260.1 68417.m04302 integral membrane Yip1 family protein c...    91   7e-19
At2g18840.1 68415.m02194 integral membrane Yip1 family protein c...    89   2e-18
At1g23935.1 68414.m03020 apoptosis inhibitory protein 5 (API5)-r...    30   1.1  
At4g27720.1 68417.m03984 expressed protein contains Pfam PF05631...    29   3.4  
At4g03110.2 68417.m00421 RNA-binding protein, putative similar t...    29   3.4  
At1g65440.1 68414.m07424 glycine-rich protein                          29   3.4  
At4g31840.1 68417.m04524 plastocyanin-like domain-containing pro...    28   4.4  
At4g22550.1 68417.m03255 phosphatidic acid phosphatase-related /...    28   4.4  
At4g04670.1 68417.m00683 Met-10+ like family protein / kelch rep...    28   5.9  
At1g71110.1 68414.m08206 expressed protein                             28   5.9  
At1g10470.1 68414.m01179 two-component responsive regulator / re...    28   5.9  
At1g50610.1 68414.m05685 leucine-rich repeat transmembrane prote...    27   7.8  

>At4g30260.1 68417.m04302 integral membrane Yip1 family protein
           contains Pfam domain, PF04893: Yip1 domain
          Length = 280

 Score = 90.6 bits (215), Expect = 7e-19
 Identities = 53/144 (36%), Positives = 75/144 (52%), Gaps = 4/144 (2%)
 Frame = +1

Query: 154 EGEMNIPGRGPSSGDNMEFNTLDEPIKETFMRDLRAVGNKFYHVLIPR----EKTSLLKE 321
           EG  +I G G  S  N    TL EP+ +T  RDL  + +    V+ P     +    L++
Sbjct: 89  EGNKSIGGSGFGSPPN----TLTEPVWDTVKRDLSRIVSNLKLVVFPNPYREDPGKALRD 144

Query: 322 WDLWGPLLLCTLMATILQGSAERADNSNDGGPEFAEVFVIVWIGAAVVTINSKLLGGNIS 501
           WDLWGP      +   L  SA     S      FA  F ++  GA ++T+N  LLGG+I 
Sbjct: 145 WDLWGPFFFIVFLGLTLSWSA-----SVKKSEVFAVAFALLAAGAVILTLNVLLLGGHII 199

Query: 502 FFQSVCVLGYCLFPVALALIICRI 573
           FFQS+ +LGYCLFP+ +  +IC +
Sbjct: 200 FFQSLSLLGYCLFPLDVGAVICML 223


>At2g18840.1 68415.m02194 integral membrane Yip1 family protein
           contains Pfam domain, PF04893: Yip1 domain
          Length = 281

 Score = 89.0 bits (211), Expect = 2e-18
 Identities = 47/125 (37%), Positives = 68/125 (54%), Gaps = 4/125 (3%)
 Frame = +1

Query: 211 NTLDEPIKETFMRDLRAVGNKFYHVLIPR----EKTSLLKEWDLWGPLLLCTLMATILQG 378
           NTL EP+ +T  RDL  + +    V+ P     +    L++WDLWGP      +   L  
Sbjct: 105 NTLTEPVWDTVKRDLSRIVSNLKLVVFPNPYREDPGKALRDWDLWGPFFFIVFLGLTLSW 164

Query: 379 SAERADNSNDGGPEFAEVFVIVWIGAAVVTINSKLLGGNISFFQSVCVLGYCLFPVALAL 558
           SA     S      FA  F ++  GA ++T+N  LLGG+I FFQS+ +LGYCLFP+ +  
Sbjct: 165 SA-----SVKKSEVFAVAFALLAAGAVILTLNVLLLGGHIIFFQSLSLLGYCLFPLDVGA 219

Query: 559 IICRI 573
           +IC +
Sbjct: 220 VICML 224


>At1g23935.1 68414.m03020 apoptosis inhibitory protein 5
           (API5)-related contains weak hit to Pfam profile
           PF05918: Apoptosis inhibitory protein 5 (API5)
          Length = 660

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
 Frame = -1

Query: 264 DSSEVSHKSLFDRFIQCVKLHV--VSTGWPSARYIHFPLNYSHI 139
           D+ +VS     DRFI C+ + V   + G PS++Y  F +N  HI
Sbjct: 114 DTFDVSDAHYVDRFISCLLMAVPFFARGAPSSKYFEF-MNRHHI 156


>At4g27720.1 68417.m03984 expressed protein contains Pfam PF05631:
           Protein of unknown function (DUF791)
          Length = 460

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +1

Query: 475 SKLLGGNISFFQSVCVLGYCLFPVALALIICRIILFSAQ 591
           SK+ GG ISF     +LG+C+F   + L    I+   +Q
Sbjct: 340 SKVKGGGISFSGCFQLLGFCIFEACVGLFWPSIMKMRSQ 378


>At4g03110.2 68417.m00421 RNA-binding protein, putative similar to
           Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
           protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
           like factor 3 [Homo sapiens] GI:12746392; contains
           InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
           recognition motif) (RRM)
          Length = 439

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 14/51 (27%), Positives = 24/51 (47%)
 Frame = +3

Query: 225 TDQRDFYARPQSCRKQILPCPHSERKDQSFKRMGPVGAVTPLHSYGHYPPG 377
           T++     R Q  +  I    + +  + S     P+G V P + YG++PPG
Sbjct: 186 TERERHTRRLQKAQSHIARLGNGDPTNPSLFGALPMGYVPPYNGYGYHPPG 236


>At1g65440.1 68414.m07424 glycine-rich protein 
          Length = 1647

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 12/30 (40%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
 Frame = +1

Query: 94  EMNTFDSKYDM-YPAGDVGVIEGEMNIPGR 180
           E++  DSK+++ +P G++GV EG+   P R
Sbjct: 440 EVDDVDSKFNLHFPPGEIGVDEGQYKRPKR 469


>At4g31840.1 68417.m04524 plastocyanin-like domain-containing
           protein
          Length = 177

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 17/44 (38%), Positives = 24/44 (54%)
 Frame = -2

Query: 209 NSMLSPLDGPRPGIFISPSITPTSPAGYMSYFESNVFISILFIY 78
           NS  SP  GP P  F  P++ PTS A  ++   S VF  +L ++
Sbjct: 132 NSAFSP--GPSPSEFDGPAVAPTSGAAKLAGGFSVVFGLVLGLW 173


>At4g22550.1 68417.m03255 phosphatidic acid phosphatase-related /
           PAP2-related contains Pfam profile PF01569: PAP2
           superfamily
          Length = 213

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 15/29 (51%), Positives = 18/29 (62%)
 Frame = +1

Query: 403 NDGGPEFAEVFVIVWIGAAVVTINSKLLG 489
           NDG  +  EV V+VWI A V  I+  LLG
Sbjct: 152 NDGDVK-VEVVVVVWIWATVTAISRILLG 179


>At4g04670.1 68417.m00683 Met-10+ like family protein / kelch
           repeat-containing protein contains Pfam profiles
           PF01344: Kelch motif, PF02475: Met-10+ like-protein
          Length = 995

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -1

Query: 210 KLHVVSTGWPSARYIHFPLNYSH 142
           KL V+S  WP AR+ H    Y H
Sbjct: 464 KLEVISGKWPHARFSHSMFVYKH 486


>At1g71110.1 68414.m08206 expressed protein
          Length = 513

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 14/26 (53%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
 Frame = +3

Query: 240 FYA-RPQSCRKQILPCPHSERKDQSF 314
           FYA RPQ  R+++   PH +RKD SF
Sbjct: 470 FYANRPQ--REEVFADPHPQRKDDSF 493


>At1g10470.1 68414.m01179 two-component responsive regulator /
           response regulator 4 (ARR4) identical to responce
           regulator1 GI:3273195 from [Arabidopsis thaliana];
           identical to cDNA ARR4 mRNA for response regulator 4
           GI:3953596
          Length = 259

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
 Frame = -2

Query: 548 ATGNKQ*PRTHTDWKNEMFPPSSLELIVTT-AAPIQTITNTSANSGPPSLELSALSAEP 375
           + GNK+     +   N   PP S  L ++  ++P  T++  S++S PP   +   S  P
Sbjct: 168 SNGNKRKLPEDSSSVNSSLPPPSPPLTISPESSPPLTVSTESSDSSPPLSPVEIFSTSP 226


>At1g50610.1 68414.m05685 leucine-rich repeat transmembrane protein
           kinase, putative similar to receptor-like protein kinase
           GB:AAC12254 GI:3015488 from [Lycopersicon esculentum]
          Length = 686

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = -2

Query: 266 PTALRSRIKVSLIGSSNVLNSMLSPLDGPRPGIFISPSITPTSP 135
           P +LR+    S  G+  + ++ LSP     PG+ + P ++P  P
Sbjct: 224 PESLRNMDPGSFAGNKGLCDAPLSPCSSSSPGVPVVP-VSPVDP 266


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,847,453
Number of Sequences: 28952
Number of extensions: 334293
Number of successful extensions: 986
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 946
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 982
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1285411824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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