Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV12b08f
(630 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g30260.1 68417.m04302 integral membrane Yip1 family protein c... 91 7e-19
At2g18840.1 68415.m02194 integral membrane Yip1 family protein c... 89 2e-18
At1g23935.1 68414.m03020 apoptosis inhibitory protein 5 (API5)-r... 30 1.1
At4g27720.1 68417.m03984 expressed protein contains Pfam PF05631... 29 3.4
At4g03110.2 68417.m00421 RNA-binding protein, putative similar t... 29 3.4
At1g65440.1 68414.m07424 glycine-rich protein 29 3.4
At4g31840.1 68417.m04524 plastocyanin-like domain-containing pro... 28 4.4
At4g22550.1 68417.m03255 phosphatidic acid phosphatase-related /... 28 4.4
At4g04670.1 68417.m00683 Met-10+ like family protein / kelch rep... 28 5.9
At1g71110.1 68414.m08206 expressed protein 28 5.9
At1g10470.1 68414.m01179 two-component responsive regulator / re... 28 5.9
At1g50610.1 68414.m05685 leucine-rich repeat transmembrane prote... 27 7.8
>At4g30260.1 68417.m04302 integral membrane Yip1 family protein
contains Pfam domain, PF04893: Yip1 domain
Length = 280
Score = 90.6 bits (215), Expect = 7e-19
Identities = 53/144 (36%), Positives = 75/144 (52%), Gaps = 4/144 (2%)
Frame = +1
Query: 154 EGEMNIPGRGPSSGDNMEFNTLDEPIKETFMRDLRAVGNKFYHVLIPR----EKTSLLKE 321
EG +I G G S N TL EP+ +T RDL + + V+ P + L++
Sbjct: 89 EGNKSIGGSGFGSPPN----TLTEPVWDTVKRDLSRIVSNLKLVVFPNPYREDPGKALRD 144
Query: 322 WDLWGPLLLCTLMATILQGSAERADNSNDGGPEFAEVFVIVWIGAAVVTINSKLLGGNIS 501
WDLWGP + L SA S FA F ++ GA ++T+N LLGG+I
Sbjct: 145 WDLWGPFFFIVFLGLTLSWSA-----SVKKSEVFAVAFALLAAGAVILTLNVLLLGGHII 199
Query: 502 FFQSVCVLGYCLFPVALALIICRI 573
FFQS+ +LGYCLFP+ + +IC +
Sbjct: 200 FFQSLSLLGYCLFPLDVGAVICML 223
>At2g18840.1 68415.m02194 integral membrane Yip1 family protein
contains Pfam domain, PF04893: Yip1 domain
Length = 281
Score = 89.0 bits (211), Expect = 2e-18
Identities = 47/125 (37%), Positives = 68/125 (54%), Gaps = 4/125 (3%)
Frame = +1
Query: 211 NTLDEPIKETFMRDLRAVGNKFYHVLIPR----EKTSLLKEWDLWGPLLLCTLMATILQG 378
NTL EP+ +T RDL + + V+ P + L++WDLWGP + L
Sbjct: 105 NTLTEPVWDTVKRDLSRIVSNLKLVVFPNPYREDPGKALRDWDLWGPFFFIVFLGLTLSW 164
Query: 379 SAERADNSNDGGPEFAEVFVIVWIGAAVVTINSKLLGGNISFFQSVCVLGYCLFPVALAL 558
SA S FA F ++ GA ++T+N LLGG+I FFQS+ +LGYCLFP+ +
Sbjct: 165 SA-----SVKKSEVFAVAFALLAAGAVILTLNVLLLGGHIIFFQSLSLLGYCLFPLDVGA 219
Query: 559 IICRI 573
+IC +
Sbjct: 220 VICML 224
>At1g23935.1 68414.m03020 apoptosis inhibitory protein 5
(API5)-related contains weak hit to Pfam profile
PF05918: Apoptosis inhibitory protein 5 (API5)
Length = 660
Score = 30.3 bits (65), Expect = 1.1
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Frame = -1
Query: 264 DSSEVSHKSLFDRFIQCVKLHV--VSTGWPSARYIHFPLNYSHI 139
D+ +VS DRFI C+ + V + G PS++Y F +N HI
Sbjct: 114 DTFDVSDAHYVDRFISCLLMAVPFFARGAPSSKYFEF-MNRHHI 156
>At4g27720.1 68417.m03984 expressed protein contains Pfam PF05631:
Protein of unknown function (DUF791)
Length = 460
Score = 28.7 bits (61), Expect = 3.4
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +1
Query: 475 SKLLGGNISFFQSVCVLGYCLFPVALALIICRIILFSAQ 591
SK+ GG ISF +LG+C+F + L I+ +Q
Sbjct: 340 SKVKGGGISFSGCFQLLGFCIFEACVGLFWPSIMKMRSQ 378
>At4g03110.2 68417.m00421 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 439
Score = 28.7 bits (61), Expect = 3.4
Identities = 14/51 (27%), Positives = 24/51 (47%)
Frame = +3
Query: 225 TDQRDFYARPQSCRKQILPCPHSERKDQSFKRMGPVGAVTPLHSYGHYPPG 377
T++ R Q + I + + + S P+G V P + YG++PPG
Sbjct: 186 TERERHTRRLQKAQSHIARLGNGDPTNPSLFGALPMGYVPPYNGYGYHPPG 236
>At1g65440.1 68414.m07424 glycine-rich protein
Length = 1647
Score = 28.7 bits (61), Expect = 3.4
Identities = 12/30 (40%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Frame = +1
Query: 94 EMNTFDSKYDM-YPAGDVGVIEGEMNIPGR 180
E++ DSK+++ +P G++GV EG+ P R
Sbjct: 440 EVDDVDSKFNLHFPPGEIGVDEGQYKRPKR 469
>At4g31840.1 68417.m04524 plastocyanin-like domain-containing
protein
Length = 177
Score = 28.3 bits (60), Expect = 4.4
Identities = 17/44 (38%), Positives = 24/44 (54%)
Frame = -2
Query: 209 NSMLSPLDGPRPGIFISPSITPTSPAGYMSYFESNVFISILFIY 78
NS SP GP P F P++ PTS A ++ S VF +L ++
Sbjct: 132 NSAFSP--GPSPSEFDGPAVAPTSGAAKLAGGFSVVFGLVLGLW 173
>At4g22550.1 68417.m03255 phosphatidic acid phosphatase-related /
PAP2-related contains Pfam profile PF01569: PAP2
superfamily
Length = 213
Score = 28.3 bits (60), Expect = 4.4
Identities = 15/29 (51%), Positives = 18/29 (62%)
Frame = +1
Query: 403 NDGGPEFAEVFVIVWIGAAVVTINSKLLG 489
NDG + EV V+VWI A V I+ LLG
Sbjct: 152 NDGDVK-VEVVVVVWIWATVTAISRILLG 179
>At4g04670.1 68417.m00683 Met-10+ like family protein / kelch
repeat-containing protein contains Pfam profiles
PF01344: Kelch motif, PF02475: Met-10+ like-protein
Length = 995
Score = 27.9 bits (59), Expect = 5.9
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = -1
Query: 210 KLHVVSTGWPSARYIHFPLNYSH 142
KL V+S WP AR+ H Y H
Sbjct: 464 KLEVISGKWPHARFSHSMFVYKH 486
>At1g71110.1 68414.m08206 expressed protein
Length = 513
Score = 27.9 bits (59), Expect = 5.9
Identities = 14/26 (53%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Frame = +3
Query: 240 FYA-RPQSCRKQILPCPHSERKDQSF 314
FYA RPQ R+++ PH +RKD SF
Sbjct: 470 FYANRPQ--REEVFADPHPQRKDDSF 493
>At1g10470.1 68414.m01179 two-component responsive regulator /
response regulator 4 (ARR4) identical to responce
regulator1 GI:3273195 from [Arabidopsis thaliana];
identical to cDNA ARR4 mRNA for response regulator 4
GI:3953596
Length = 259
Score = 27.9 bits (59), Expect = 5.9
Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Frame = -2
Query: 548 ATGNKQ*PRTHTDWKNEMFPPSSLELIVTT-AAPIQTITNTSANSGPPSLELSALSAEP 375
+ GNK+ + N PP S L ++ ++P T++ S++S PP + S P
Sbjct: 168 SNGNKRKLPEDSSSVNSSLPPPSPPLTISPESSPPLTVSTESSDSSPPLSPVEIFSTSP 226
>At1g50610.1 68414.m05685 leucine-rich repeat transmembrane protein
kinase, putative similar to receptor-like protein kinase
GB:AAC12254 GI:3015488 from [Lycopersicon esculentum]
Length = 686
Score = 27.5 bits (58), Expect = 7.8
Identities = 13/44 (29%), Positives = 23/44 (52%)
Frame = -2
Query: 266 PTALRSRIKVSLIGSSNVLNSMLSPLDGPRPGIFISPSITPTSP 135
P +LR+ S G+ + ++ LSP PG+ + P ++P P
Sbjct: 224 PESLRNMDPGSFAGNKGLCDAPLSPCSSSSPGVPVVP-VSPVDP 266
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,847,453
Number of Sequences: 28952
Number of extensions: 334293
Number of successful extensions: 986
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 946
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 982
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1285411824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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