Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV12b07r
(781 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g11420.1 68417.m01840 eukaryotic translation initiation facto... 34 0.092
At4g25630.1 68417.m03691 fibrillarin 2 (FIB2) identical to fibri... 32 0.37
At4g18990.1 68417.m02797 xyloglucan:xyloglucosyl transferase, pu... 32 0.37
At4g01985.1 68417.m00265 expressed protein 30 1.5
At2g23270.1 68415.m02779 expressed protein ; similar to GP|24648... 30 1.5
At3g24120.2 68416.m03029 myb family transcription factor contain... 30 2.0
At5g62760.2 68418.m07879 nuclear protein ZAP-related similar to ... 29 2.6
At5g62760.1 68418.m07878 nuclear protein ZAP-related similar to ... 29 2.6
At3g44340.1 68416.m04764 sec23/sec24 transport family protein co... 29 2.6
At1g58380.1 68414.m06642 40S ribosomal protein S2 (RPS2A) simila... 29 2.6
At1g24460.1 68414.m03081 myosin-related contains TIGRFAM TIGR016... 29 4.6
At3g22810.1 68416.m02875 expressed protein ; expression support... 28 6.0
At1g52080.1 68414.m05875 actin binding protein family contains P... 28 6.0
At4g28490.1 68417.m04076 leucine-rich repeat transmembrane prote... 28 8.0
At1g79280.1 68414.m09242 expressed protein weak similarity to Nu... 28 8.0
At1g76010.1 68414.m08825 expressed protein 28 8.0
At1g32730.1 68414.m04036 expressed protein 28 8.0
>At4g11420.1 68417.m01840 eukaryotic translation initiation factor 3
subunit 10 / eIF-3 theta / eIF3a (TIF3A1) identical to
eukaryotic translation initiation factor 3 subunit 10
(eIF-3 theta) (Eukaryotic translation initiation factor
3 large subunit) (eIF3a) (p114). [Arabidopsis thaliana]
SWISS-PROT:Q9LD55
Length = 987
Score = 34.3 bits (75), Expect = 0.092
Identities = 23/79 (29%), Positives = 43/79 (54%), Gaps = 2/79 (2%)
Frame = -2
Query: 327 LEDAIEGEKTEQWRAQGQELLIQAKKENVLLQLEAAYRERLM--YAYSEVKRRLDYQLEK 154
L++ E EK Q A+ + L +AK+E +EAAY+ RL+ + E +++ + +L K
Sbjct: 671 LKERQEMEKKLQKLAKTMDYLERAKREEAAPLIEAAYQRRLVEEREFYEREQQREVELSK 730
Query: 153 SNVERRLAQKHMVDWIVSN 97
E L +K+ + ++ N
Sbjct: 731 ERHESDLKEKNRLSRMLGN 749
>At4g25630.1 68417.m03691 fibrillarin 2 (FIB2) identical to
fibrillarin 2 GI:9965655 from [Arabidopsis thaliana]
Length = 320
Score = 32.3 bits (70), Expect = 0.37
Identities = 18/44 (40%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Frame = -1
Query: 325 GGRNRGR--EDGAVARAGTGAPHPGQEGERAPAARGRLQGEAHV 200
GGR GR D G G P G G R PA RG ++G + V
Sbjct: 37 GGRGGGRGFSDRGGRGRGRGPPRGGARGGRGPAGRGGMKGGSKV 80
>At4g18990.1 68417.m02797 xyloglucan:xyloglucosyl transferase,
putative / xyloglucan endotransglycosylase, putative /
endo-xyloglucan transferase, putative similar to
xyloglucan endotransglycosylase-related protein XTR4
GI:1244754 from [Arabidopsis thaliana]
Length = 357
Score = 32.3 bits (70), Expect = 0.37
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Frame = -2
Query: 594 GFIPEEWFQ--FFHSKTGVTGPYTFGVGLATYLCSKEIYVMEHE 469
GFI +Q FF S + G YT G+ +A Y + +++V +H+
Sbjct: 73 GFISSSMYQHGFFSSLIKLPGAYTAGIVVAFYTSNGDVFVKDHD 116
>At4g01985.1 68417.m00265 expressed protein
Length = 579
Score = 30.3 bits (65), Expect = 1.5
Identities = 30/107 (28%), Positives = 36/107 (33%)
Frame = -1
Query: 325 GGRNRGREDGAVARAGTGAPHPGQEGERAPAARGRLQGEAHVRLLRGEAASGLPAREVER 146
GG+ RGR+ G A G G G G G + G A+ G+ R
Sbjct: 104 GGKGRGRKGGGGAGGGVGGGVGAGGGAGGSVGAGGGIGGGAGGAIGGGASGGVGGGGKGR 163
Query: 145 GAPSRPEAHGRLDSEQRDQGDHSGPGEAGPGPLHRGPGFAGQEVNGS 5
G S A G + G G AG G G G G GS
Sbjct: 164 GGKSGGGAGGGVGGGVGAGGGAGGSVGAGGGIGSGGGGTVGAGGRGS 210
>At2g23270.1 68415.m02779 expressed protein ; similar to
GP|2464853|gnl|PID|e353149|Z99707
Length = 86
Score = 30.3 bits (65), Expect = 1.5
Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = -1
Query: 151 ERGAPSRPEAHGRLD-SEQRDQGDHSGPGEAGPG 53
E G S E H +D +E + G HSGP +GPG
Sbjct: 52 ESGPSSGGEGHRFVDRTETLEYGKHSGPSTSGPG 85
>At3g24120.2 68416.m03029 myb family transcription factor contains
Pfam profile: PF00249 myb-like DNA-binding domain
Length = 298
Score = 29.9 bits (64), Expect = 2.0
Identities = 20/73 (27%), Positives = 36/73 (49%)
Frame = -2
Query: 351 GRNQTVKALEDAIEGEKTEQWRAQGQELLIQAKKENVLLQLEAAYRERLMYAYSEVKRRL 172
G+ T + + + GE + + + + +++N Q+ A R ++ EV+RRL
Sbjct: 100 GKESTENSKDASCVGESQDTGSSSTSSMRMAQQEQNEGYQVTEALRAQM-----EVQRRL 154
Query: 171 DYQLEKSNVERRL 133
QLE V+RRL
Sbjct: 155 HDQLEYGQVQRRL 167
>At5g62760.2 68418.m07879 nuclear protein ZAP-related similar to
nuclear protein ZAP, Mus musculus, EMBL:AB033168 this
cDNA provides a truncated ORF likely due to a skipped
exon. An alternative ORF is provided.
Length = 383
Score = 29.5 bits (63), Expect = 2.6
Identities = 22/80 (27%), Positives = 35/80 (43%)
Frame = -1
Query: 262 PGQEGERAPAARGRLQGEAHVRLLRGEAASGLPAREVERGAPSRPEAHGRLDSEQRDQGD 83
PG +P+ R + E ++++R + GL APS E + + SE R+ G
Sbjct: 123 PGYGVSESPSPRISWENERRLKMVR-DHGYGL-------AAPSNIEMNHQYGSEFRNGGQ 174
Query: 82 HSGPGEAGPGPLHRGPGFAG 23
+G P P H P + G
Sbjct: 175 FNGVAPLPPPPPHHPPPYGG 194
>At5g62760.1 68418.m07878 nuclear protein ZAP-related similar to
nuclear protein ZAP, Mus musculus, EMBL:AB033168 this
cDNA provides a truncated ORF likely due to a skipped
exon. An alternative ORF is provided.
Length = 661
Score = 29.5 bits (63), Expect = 2.6
Identities = 22/80 (27%), Positives = 35/80 (43%)
Frame = -1
Query: 262 PGQEGERAPAARGRLQGEAHVRLLRGEAASGLPAREVERGAPSRPEAHGRLDSEQRDQGD 83
PG +P+ R + E ++++R + GL APS E + + SE R+ G
Sbjct: 123 PGYGVSESPSPRISWENERRLKMVR-DHGYGL-------AAPSNIEMNHQYGSEFRNGGQ 174
Query: 82 HSGPGEAGPGPLHRGPGFAG 23
+G P P H P + G
Sbjct: 175 FNGVAPLPPPPPHHPPPYGG 194
>At3g44340.1 68416.m04764 sec23/sec24 transport family protein
contains Pfam domains PF04811: Sec23/Sec24 trunk domain,
PF04815: Sec23/Sec24 helical domain and PF04810:
Sec23/Sec24 zinc finger
Length = 1096
Score = 29.5 bits (63), Expect = 2.6
Identities = 16/48 (33%), Positives = 19/48 (39%)
Frame = -1
Query: 175 SGLPAREVERGAPSRPEAHGRLDSEQRDQGDHSGPGEAGPGPLHRGPG 32
SG+P + G P G L + G GP GP P GPG
Sbjct: 185 SGMPGGPLSNGPPPSGMHGGHLSNGPPPSGMPGGPLSNGPPPPMMGPG 232
>At1g58380.1 68414.m06642 40S ribosomal protein S2 (RPS2A) similar
to ribosomal protein S2 GI:939717 from (Urechis caupo)
Length = 284
Score = 29.5 bits (63), Expect = 2.6
Identities = 16/44 (36%), Positives = 19/44 (43%)
Frame = -1
Query: 337 RESTGGRNRGREDGAVARAGTGAPHPGQEGERAPAARGRLQGEA 206
R GG RG + G R G G+ +R P RGR G A
Sbjct: 4 RGGEGGAERGGDRGDFGRGFGGGRGGGRGRDRGPRGRGRRGGRA 47
>At1g24460.1 68414.m03081 myosin-related contains TIGRFAM TIGR01612:
reticulocyte binding protein; similar to Myosin heavy
chain, non-muscle (Zipper protein) (Myosin II)
(SP:Q99323) {Drosophila melanogaster} similar to EST
gb|T76116
Length = 1730
Score = 28.7 bits (61), Expect = 4.6
Identities = 33/118 (27%), Positives = 55/118 (46%), Gaps = 6/118 (5%)
Frame = -2
Query: 384 EVEATENEWNEGRNQTVKALEDAIEGEKTEQWRAQGQELLIQAKKENVLLQLEAAYRERL 205
EV+A ++ E + +K +EDA+ + R + +QA KEN L+L+ A +
Sbjct: 865 EVDALTSKLAETQT-ALKLVEDALSTAEDNISRLTEENRNVQAAKENAELELQKAVADA- 922
Query: 204 MYAYSEVKRRLDYQL-EKSNVERRLAQ-KHMVDWIVSNVTKA----ITPDQEKQALDR 49
S V LD L KS +E L Q + + I+S +A T + E++ L +
Sbjct: 923 ----SSVASELDEVLATKSTLEAALMQAERNISDIISEKEEAQGRTATAEMEQEMLQK 976
>At3g22810.1 68416.m02875 expressed protein ; expression supported
by MPSS
Length = 472
Score = 28.3 bits (60), Expect = 6.0
Identities = 14/51 (27%), Positives = 27/51 (52%)
Frame = -2
Query: 327 LEDAIEGEKTEQWRAQGQELLIQAKKENVLLQLEAAYRERLMYAYSEVKRR 175
+ED G +W A+G +LL + +K ++ ++ + Y RL ++K R
Sbjct: 340 VEDNFLGHCNREWLARGGQLLKRTRKGDLHWKIVSVYINRLNQVILKMKSR 390
>At1g52080.1 68414.m05875 actin binding protein family contains
Prosite PS00019: Actinin-type actin-binding domain
signature 1; similar to actin binding protein
(GI:28071265) [Arabidopsis thaliana]; similar to A-type
inclusion protein (ATI) (Swiss-Prot:P16602) [Cowpox
virus]
Length = 573
Score = 28.3 bits (60), Expect = 6.0
Identities = 25/110 (22%), Positives = 54/110 (49%), Gaps = 1/110 (0%)
Frame = -2
Query: 327 LEDAIEGEKTEQWRAQGQELLIQA-KKENVLLQLEAAYRERLMYAYSEVKRRLDYQLEKS 151
+E + K ++ +A+ ++L + + VLL+L+ A + +K++L+ ++
Sbjct: 187 METKVFNFKIKKLQAENEKLKAECFEHSKVLLELDMAKSQ-----VQVLKKKLNINTQQ- 240
Query: 150 NVERRLAQKHMVDWIVSNVTKAITPDQEKQALDRCIADLASLARK*TEAN 1
+V + L+ K V + KA+ PD E + + + DL S + T+ N
Sbjct: 241 HVAQILSLKQRVARLQEEEIKAVLPDLEADKMMQRLRDLESEINELTDTN 290
>At4g28490.1 68417.m04076 leucine-rich repeat transmembrane protein
kinase, putative
Length = 999
Score = 27.9 bits (59), Expect = 8.0
Identities = 18/67 (26%), Positives = 26/67 (38%)
Frame = -2
Query: 759 IYDKXCCRAWLCVSGASKQTACTALVARGSASDVATHDQKTFARPVRGEPGKVRLGFIPE 580
I K R W C S + + GS +DV D+K V G P ++R+
Sbjct: 744 IRHKSIVRLWCCCSSGDCKLLVYEYMPNGSLADVLHGDRK--GGVVLGWPERLRIALDAA 801
Query: 579 EWFQFFH 559
E + H
Sbjct: 802 EGLSYLH 808
>At1g79280.1 68414.m09242 expressed protein weak similarity to
Nucleoprotein TPR (Swiss-Prot:P12270) [Homo sapiens]
Length = 2111
Score = 27.9 bits (59), Expect = 8.0
Identities = 29/129 (22%), Positives = 58/129 (44%), Gaps = 5/129 (3%)
Frame = -2
Query: 387 KEVEATENEWNEGRNQTVKALEDAIE--GEKTEQWRAQGQELLIQAKKENVLLQLEAAYR 214
++ E ++E ++ K LE+A E G++T Q + + +KE +Q+ Y
Sbjct: 1469 RKYEKEKDELSKQNQSLAKQLEEAKEEAGKRTTTDAVVEQSVKEREEKEK-RIQILDKYV 1527
Query: 213 ERL---MYAYSEVKRRLDYQLEKSNVERRLAQKHMVDWIVSNVTKAITPDQEKQALDRCI 43
+L + +E ++ D +L K ER+ +K + D + + D+E L+R
Sbjct: 1528 HQLKDEVRKKTEDLKKKDEELTKERSERKSVEKEVGDSLTKIKKEKTKVDEELAKLERYQ 1587
Query: 42 ADLASLARK 16
L L+ +
Sbjct: 1588 TALTHLSEE 1596
>At1g76010.1 68414.m08825 expressed protein
Length = 350
Score = 27.9 bits (59), Expect = 8.0
Identities = 37/118 (31%), Positives = 43/118 (36%), Gaps = 13/118 (11%)
Frame = -1
Query: 331 STGGRNRGREDG---AVARAGTGAPHPGQEGERAPAAR----GRLQGEAHVRLLRGEAAS 173
S GGR RGR G R G G + E E R GR +G R RG
Sbjct: 147 SPGGRGRGRGRGRGRGRGRGGRGNAYVNVEHEDGGWEREQSYGRGRGRGRGRSSRGRGRG 206
Query: 172 GLPAREVERGAPSRPEAHGRLDSEQR---DQGDHSGP--GEAG-PGPLHRGPGFAGQE 17
G E AP E R D+G + P G G GP RG G+ G +
Sbjct: 207 GYNGPPNEYDAPQDGGYGYDAPHEHRGYDDRGGYDAPPQGRGGYDGPQGRG-GYDGPQ 263
>At1g32730.1 68414.m04036 expressed protein
Length = 327
Score = 27.9 bits (59), Expect = 8.0
Identities = 21/77 (27%), Positives = 32/77 (41%)
Frame = -2
Query: 408 KLAAWLDKEVEATENEWNEGRNQTVKALEDAIEGEKTEQWRAQGQELLIQAKKENVLLQL 229
KL + D+ +E ENE + V LE+A + G Q K+EN++ +L
Sbjct: 137 KLKEYRDRNIEV-ENEAFDRYMSNVNLLEEAFSFTSVPDEESHGTAAPEQNKEENIVSEL 195
Query: 228 EAAYRERLMYAYSEVKR 178
+ R S KR
Sbjct: 196 KLRLRSNSARTESFKKR 212
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,786,892
Number of Sequences: 28952
Number of extensions: 354221
Number of successful extensions: 1265
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1216
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1258
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1746037600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -