Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV12b07f
(626 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X60221-1|CAA42782.1| 256|Homo sapiens H+-ATP synthase subunit b... 123 6e-28
BC016350-1|AAH16350.1| 256|Homo sapiens ATP synthase, H+ transp... 122 8e-28
BC005366-1|AAH05366.1| 256|Homo sapiens ATP synthase, H+ transp... 122 8e-28
AY871272-1|AAX11428.1| 256|Homo sapiens cell proliferation-indu... 122 8e-28
AL390195-7|CAC36042.1| 256|Homo sapiens ATP synthase, H+ transp... 122 8e-28
AK223018-1|BAD96738.1| 256|Homo sapiens ATP synthase, H+ transp... 122 8e-28
BC005960-1|AAH05960.1| 256|Homo sapiens ATP synthase, H+ transp... 120 6e-27
AL390195-8|CAI15628.1| 195|Homo sapiens ATP synthase, H+ transp... 85 3e-16
BC131805-1|AAI31806.1| 913|Homo sapiens CCDC46 protein protein. 33 0.63
AL121586-7|CAB89415.1| 2442|Homo sapiens centrosomal protein 250... 33 1.1
AF049105-1|AAC07988.1| 2442|Homo sapiens centrosomal Nek2-associ... 33 1.1
AF022655-1|AAC06349.1| 2442|Homo sapiens cep250 centrosome assoc... 33 1.1
BC119788-1|AAI19789.1| 626|Homo sapiens APOB48R protein protein. 32 1.4
BC119786-1|AAI19787.1| 1088|Homo sapiens apolipoprotein B48 rece... 32 1.4
AF141334-1|AAF78765.1| 1076|Homo sapiens placenta apolipoprotein... 32 1.4
AF141333-1|AAF76256.1| 1088|Homo sapiens apolipoprotein B48 rece... 32 1.4
AF141332-1|AAF76255.1| 1088|Homo sapiens apolipoprotein B48 rece... 32 1.4
J00116-1|AAA51997.1| 456|Homo sapiens COL2A1 protein. 30 5.8
AL445686-4|CAI14682.1| 904|Homo sapiens serine/arginine repetit... 30 7.7
AL445686-3|CAI14683.1| 913|Homo sapiens serine/arginine repetit... 30 7.7
AL445648-3|CAH73090.1| 904|Homo sapiens serine/arginine repetit... 30 7.7
AL445648-2|CAH73089.1| 913|Homo sapiens serine/arginine repetit... 30 7.7
AK128829-1|BAC87629.1| 385|Homo sapiens protein ( Homo sapiens ... 30 7.7
AF419855-1|AAP97290.1| 820|Homo sapiens Ser/Arg-related nuclear... 30 7.7
AF048977-1|AAC09321.1| 820|Homo sapiens Ser/Arg-related nuclear... 30 7.7
AB065557-1|BAC45258.1| 542|Homo sapiens seven transmembrane hel... 30 7.7
>X60221-1|CAA42782.1| 256|Homo sapiens H+-ATP synthase subunit b
protein.
Length = 256
Score = 123 bits (296), Expect = 6e-28
Identities = 76/191 (39%), Positives = 106/191 (55%), Gaps = 7/191 (3%)
Frame = +1
Query: 73 MLSRVALRSGASKQTAC--TALVARGSASDVAT-HDQKTFARPVRGEP---GKVRLGFIP 234
MLSRV L + A+ + A + G T H + PV P GKVR G IP
Sbjct: 1 MLSRVVLSAAATAAPSLKNAAFLGPGVLQATRTFHTGQPHLVPVPPLPEYGGKVRYGLIP 60
Query: 235 EEWFQFFHSKTGVTGPYTFGVGLATYLCSKEIYVMEHEYYSGLSLL-VMVYVAHVKFGPK 411
EE+FQF + KTGVTGPY G GL Y SKEIYV+ E ++ LS+L VMVY K+GP
Sbjct: 61 EEFFQFLYPKTGVTGPYVLGTGLVLYALSKEIYVISAETFTALSVLGVMVY-GIKKYGPF 119
Query: 412 LAAWLDKEVEATENEWNEGRNQTVKALEDAIEGEKTEQWRAQGQELLIQAKKENVLLQLE 591
+A + DK E + E + +++ +++AI+ EK++Q Q + L ++ N+ + LE
Sbjct: 120 VADFADKLNEQKLAQLEEAKQASIQHIQNAIDTEKSQQALVQKRHYLFDVQRNNIAMALE 179
Query: 592 AAYRERLMYAY 624
YRERL Y
Sbjct: 180 VTYRERLYRVY 190
>BC016350-1|AAH16350.1| 256|Homo sapiens ATP synthase, H+
transporting, mitochondrial F0 complex, subunit B1
protein.
Length = 256
Score = 122 bits (295), Expect = 8e-28
Identities = 76/191 (39%), Positives = 106/191 (55%), Gaps = 7/191 (3%)
Frame = +1
Query: 73 MLSRVALRSGASKQTAC--TALVARGSASDVAT-HDQKTFARPVRGEP---GKVRLGFIP 234
MLSRV L + A+ + A + G T H + PV P GKVR G IP
Sbjct: 1 MLSRVVLSAAATAAPSLKNAAFLGPGVLQATRTFHTGQPHLVPVPPLPEYGGKVRYGLIP 60
Query: 235 EEWFQFFHSKTGVTGPYTFGVGLATYLCSKEIYVMEHEYYSGLSLL-VMVYVAHVKFGPK 411
EE+FQF + KTGVTGPY G GL Y SKEIYV+ E ++ LS+L VMVY K+GP
Sbjct: 61 EEFFQFLYPKTGVTGPYVLGTGLILYALSKEIYVISAETFTALSVLGVMVY-GIKKYGPF 119
Query: 412 LAAWLDKEVEATENEWNEGRNQTVKALEDAIEGEKTEQWRAQGQELLIQAKKENVLLQLE 591
+A + DK E + E + +++ +++AI+ EK++Q Q + L ++ N+ + LE
Sbjct: 120 VADFADKLNEQKLAQLEEAKQASIQHIQNAIDTEKSQQALVQKRHYLFDVQRNNIAMALE 179
Query: 592 AAYRERLMYAY 624
YRERL Y
Sbjct: 180 VTYRERLYRVY 190
>BC005366-1|AAH05366.1| 256|Homo sapiens ATP synthase, H+
transporting, mitochondrial F0 complex, subunit B1
protein.
Length = 256
Score = 122 bits (295), Expect = 8e-28
Identities = 76/191 (39%), Positives = 106/191 (55%), Gaps = 7/191 (3%)
Frame = +1
Query: 73 MLSRVALRSGASKQTAC--TALVARGSASDVAT-HDQKTFARPVRGEP---GKVRLGFIP 234
MLSRV L + A+ + A + G T H + PV P GKVR G IP
Sbjct: 1 MLSRVVLSAAATAAPSLKNAAFLGPGVLQATRTFHTGQPHLVPVPPLPEYGGKVRYGLIP 60
Query: 235 EEWFQFFHSKTGVTGPYTFGVGLATYLCSKEIYVMEHEYYSGLSLL-VMVYVAHVKFGPK 411
EE+FQF + KTGVTGPY G GL Y SKEIYV+ E ++ LS+L VMVY K+GP
Sbjct: 61 EEFFQFLYPKTGVTGPYVLGTGLILYALSKEIYVISAETFTALSVLGVMVY-GIKKYGPF 119
Query: 412 LAAWLDKEVEATENEWNEGRNQTVKALEDAIEGEKTEQWRAQGQELLIQAKKENVLLQLE 591
+A + DK E + E + +++ +++AI+ EK++Q Q + L ++ N+ + LE
Sbjct: 120 VADFADKLNEQKLAQLEEAKQASIQHIQNAIDTEKSQQALVQKRHYLFDVQRNNIAMALE 179
Query: 592 AAYRERLMYAY 624
YRERL Y
Sbjct: 180 VTYRERLYRVY 190
>AY871272-1|AAX11428.1| 256|Homo sapiens cell
proliferation-inducing protein 47 protein.
Length = 256
Score = 122 bits (295), Expect = 8e-28
Identities = 76/191 (39%), Positives = 106/191 (55%), Gaps = 7/191 (3%)
Frame = +1
Query: 73 MLSRVALRSGASKQTAC--TALVARGSASDVAT-HDQKTFARPVRGEP---GKVRLGFIP 234
MLSRV L + A+ + A + G T H + PV P GKVR G IP
Sbjct: 1 MLSRVVLSAAATAAPSLKNAAFLGPGVLQATRTFHTGQPHLVPVPPLPEYGGKVRYGLIP 60
Query: 235 EEWFQFFHSKTGVTGPYTFGVGLATYLCSKEIYVMEHEYYSGLSLL-VMVYVAHVKFGPK 411
EE+FQF + KTGVTGPY G GL Y SKEIYV+ E ++ LS+L VMVY K+GP
Sbjct: 61 EEFFQFLYPKTGVTGPYVLGTGLILYALSKEIYVISAETFTALSVLGVMVY-GIKKYGPF 119
Query: 412 LAAWLDKEVEATENEWNEGRNQTVKALEDAIEGEKTEQWRAQGQELLIQAKKENVLLQLE 591
+A + DK E + E + +++ +++AI+ EK++Q Q + L ++ N+ + LE
Sbjct: 120 VADFADKLNEQKLAQLEEAKQASIQHIQNAIDTEKSQQALVQKRHYLFDVQRNNIAMALE 179
Query: 592 AAYRERLMYAY 624
YRERL Y
Sbjct: 180 VTYRERLYRVY 190
>AL390195-7|CAC36042.1| 256|Homo sapiens ATP synthase, H+
transporting, mitochondrial F0 complex, subunit B1
protein.
Length = 256
Score = 122 bits (295), Expect = 8e-28
Identities = 76/191 (39%), Positives = 106/191 (55%), Gaps = 7/191 (3%)
Frame = +1
Query: 73 MLSRVALRSGASKQTAC--TALVARGSASDVAT-HDQKTFARPVRGEP---GKVRLGFIP 234
MLSRV L + A+ + A + G T H + PV P GKVR G IP
Sbjct: 1 MLSRVVLSAAATAAPSLKNAAFLGPGVLQATRTFHTGQPHLVPVPPLPEYGGKVRYGLIP 60
Query: 235 EEWFQFFHSKTGVTGPYTFGVGLATYLCSKEIYVMEHEYYSGLSLL-VMVYVAHVKFGPK 411
EE+FQF + KTGVTGPY G GL Y SKEIYV+ E ++ LS+L VMVY K+GP
Sbjct: 61 EEFFQFLYPKTGVTGPYVLGTGLILYALSKEIYVISAETFTALSVLGVMVY-GIKKYGPF 119
Query: 412 LAAWLDKEVEATENEWNEGRNQTVKALEDAIEGEKTEQWRAQGQELLIQAKKENVLLQLE 591
+A + DK E + E + +++ +++AI+ EK++Q Q + L ++ N+ + LE
Sbjct: 120 VADFADKLNEQKLAQLEEAKQASIQHIQNAIDTEKSQQALVQKRHYLFDVQRNNIAMALE 179
Query: 592 AAYRERLMYAY 624
YRERL Y
Sbjct: 180 VTYRERLYRVY 190
>AK223018-1|BAD96738.1| 256|Homo sapiens ATP synthase, H+
transporting, mitochondrial F0 complex, subunit b
isoform 1 pr protein.
Length = 256
Score = 122 bits (295), Expect = 8e-28
Identities = 76/191 (39%), Positives = 106/191 (55%), Gaps = 7/191 (3%)
Frame = +1
Query: 73 MLSRVALRSGASKQTAC--TALVARGSASDVAT-HDQKTFARPVRGEP---GKVRLGFIP 234
MLSRV L + A+ + A + G T H + PV P GKVR G IP
Sbjct: 1 MLSRVVLSAAATAAPSLKNAAFLGPGVLQATRTFHTGQPHLVPVPPLPEYGGKVRYGLIP 60
Query: 235 EEWFQFFHSKTGVTGPYTFGVGLATYLCSKEIYVMEHEYYSGLSLL-VMVYVAHVKFGPK 411
EE+FQF + KTGVTGPY G GL Y SKEIYV+ E ++ LS+L VMVY K+GP
Sbjct: 61 EEFFQFLYPKTGVTGPYVLGTGLILYALSKEIYVISAETFTALSVLGVMVY-GIKKYGPF 119
Query: 412 LAAWLDKEVEATENEWNEGRNQTVKALEDAIEGEKTEQWRAQGQELLIQAKKENVLLQLE 591
+A + DK E + E + +++ +++AI+ EK++Q Q + L ++ N+ + LE
Sbjct: 120 VADFADKLNEQKLAQLEEAKQASIQHIQNAIDTEKSQQALVQKRHYLFDVQRNNIAMALE 179
Query: 592 AAYRERLMYAY 624
YRERL Y
Sbjct: 180 VTYRERLYRVY 190
>BC005960-1|AAH05960.1| 256|Homo sapiens ATP synthase, H+
transporting, mitochondrial F0 complex, subunit B1
protein.
Length = 256
Score = 120 bits (288), Expect = 6e-27
Identities = 75/191 (39%), Positives = 105/191 (54%), Gaps = 7/191 (3%)
Frame = +1
Query: 73 MLSRVALRSGASKQTAC--TALVARGSASDVAT-HDQKTFARPVRGEP---GKVRLGFIP 234
MLSRV L + A+ + A + G T H + PV P GKVR G IP
Sbjct: 1 MLSRVVLSAAATAAPSLKNAAFLGPGVLQATRTFHTGQPHLVPVPPLPEYGGKVRYGLIP 60
Query: 235 EEWFQFFHSKTGVTGPYTFGVGLATYLCSKEIYVMEHEYYSGLSLL-VMVYVAHVKFGPK 411
EE+FQF + KTGVTGPY G GL Y SK IYV+ E ++ LS+L VMVY K+GP
Sbjct: 61 EEFFQFLYPKTGVTGPYVLGTGLILYALSKGIYVISAETFTALSVLGVMVY-GIKKYGPF 119
Query: 412 LAAWLDKEVEATENEWNEGRNQTVKALEDAIEGEKTEQWRAQGQELLIQAKKENVLLQLE 591
+A + DK E + E + +++ +++AI+ EK++Q Q + L ++ N+ + LE
Sbjct: 120 VADFADKLNEQKLAQLEEAKQASIQHIQNAIDTEKSQQALVQKRHYLFDVQRNNIAMALE 179
Query: 592 AAYRERLMYAY 624
YRERL Y
Sbjct: 180 VTYRERLYRVY 190
>AL390195-8|CAI15628.1| 195|Homo sapiens ATP synthase, H+
transporting, mitochondrial F0 complex, subunit B1
protein.
Length = 195
Score = 84.6 bits (200), Expect = 3e-16
Identities = 46/123 (37%), Positives = 69/123 (56%), Gaps = 1/123 (0%)
Frame = +1
Query: 259 SKTGVTGPYTFGVGLATYLCSKEIYVMEHEYYSGLSLL-VMVYVAHVKFGPKLAAWLDKE 435
S GPY G GL Y SKEIYV+ E ++ LS+L VMVY K+GP +A + DK
Sbjct: 8 SAAATAGPYVLGTGLILYALSKEIYVISAETFTALSVLGVMVY-GIKKYGPFVADFADKL 66
Query: 436 VEATENEWNEGRNQTVKALEDAIEGEKTEQWRAQGQELLIQAKKENVLLQLEAAYRERLM 615
E + E + +++ +++AI+ EK++Q Q + L ++ N+ + LE YRERL
Sbjct: 67 NEQKLAQLEEAKQASIQHIQNAIDTEKSQQALVQKRHYLFDVQRNNIAMALEVTYRERLY 126
Query: 616 YAY 624
Y
Sbjct: 127 RVY 129
>BC131805-1|AAI31806.1| 913|Homo sapiens CCDC46 protein protein.
Length = 913
Score = 33.5 bits (73), Expect = 0.63
Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Frame = +1
Query: 427 DKEVEATENEWNEGRNQTVKALEDAIEGEKTE-QWRAQGQELLIQAKKENVLLQLEAAYR 603
D ++EA N WN G + K +E EK + Q + I +K N + +L+ YR
Sbjct: 201 DSDIEARLNSWNLGLDMKTKMMEAKFHEEKLKLQQKHDADVQKILERKNNEIEELKTLYR 260
Query: 604 ER 609
+
Sbjct: 261 SK 262
>AL121586-7|CAB89415.1| 2442|Homo sapiens centrosomal protein 250kDa
protein.
Length = 2442
Score = 32.7 bits (71), Expect = 1.1
Identities = 18/57 (31%), Positives = 34/57 (59%)
Frame = +1
Query: 421 WLDKEVEATENEWNEGRNQTVKALEDAIEGEKTEQWRAQGQELLIQAKKENVLLQLE 591
W K+ + E+E E ++T+ +L+ + + ++ AQG+ L+QA KEN+ Q+E
Sbjct: 1304 WEGKQ-NSLESELME-LHETMASLQSRLRRAELQRMEAQGERELLQAAKENLTAQVE 1358
>AF049105-1|AAC07988.1| 2442|Homo sapiens centrosomal Nek2-associated
protein 1 protein.
Length = 2442
Score = 32.7 bits (71), Expect = 1.1
Identities = 18/57 (31%), Positives = 34/57 (59%)
Frame = +1
Query: 421 WLDKEVEATENEWNEGRNQTVKALEDAIEGEKTEQWRAQGQELLIQAKKENVLLQLE 591
W K+ + E+E E ++T+ +L+ + + ++ AQG+ L+QA KEN+ Q+E
Sbjct: 1304 WEGKQ-NSLESELME-LHETMASLQSRLRRAELQRMEAQGERELLQAAKENLTAQVE 1358
>AF022655-1|AAC06349.1| 2442|Homo sapiens cep250 centrosome associated
protein protein.
Length = 2442
Score = 32.7 bits (71), Expect = 1.1
Identities = 18/57 (31%), Positives = 34/57 (59%)
Frame = +1
Query: 421 WLDKEVEATENEWNEGRNQTVKALEDAIEGEKTEQWRAQGQELLIQAKKENVLLQLE 591
W K+ + E+E E ++T+ +L+ + + ++ AQG+ L+QA KEN+ Q+E
Sbjct: 1304 WEGKQ-NSLESELME-LHETMASLQSRLRRAELQRMEAQGERELLQAAKENLTAQVE 1358
>BC119788-1|AAI19789.1| 626|Homo sapiens APOB48R protein protein.
Length = 626
Score = 32.3 bits (70), Expect = 1.4
Identities = 38/144 (26%), Positives = 58/144 (40%), Gaps = 7/144 (4%)
Frame = +1
Query: 202 EPGKVRLGFIPEEWFQFFHSKTGVTGPYTFGVGLATYLCSKEIYVMEHEYYSGLSLLVMV 381
E + G + EW HS T GP G +E E E L+L
Sbjct: 67 EAAQTSCGLLGVEWGGLTHSVTKGQGPELMGGAQTPTKQPEEREAGEVELMGVLALSKEE 126
Query: 382 YVAHVKFGPKLAAWLDKEV-EATENEWNEGRNQTVK---ALEDAIEGE-KTEQWRAQGQE 546
++ GP+ A + E EA W + ++ EDA +GE + E+ A GQ
Sbjct: 127 QERSLEAGPRHAGSVKPEASEAFPGAWENRTRKDMERGNTQEDAADGEQREEEETAGGQT 186
Query: 547 LLIQAK--KENVLLQLEAAYRERL 612
L +A+ +E+ L ++ A E L
Sbjct: 187 LAAEAEGDRESELSEVPEAGGEGL 210
>BC119786-1|AAI19787.1| 1088|Homo sapiens apolipoprotein B48
receptor protein.
Length = 1088
Score = 32.3 bits (70), Expect = 1.4
Identities = 38/144 (26%), Positives = 58/144 (40%), Gaps = 7/144 (4%)
Frame = +1
Query: 202 EPGKVRLGFIPEEWFQFFHSKTGVTGPYTFGVGLATYLCSKEIYVMEHEYYSGLSLLVMV 381
E + G + EW HS T GP G +E E E L+L
Sbjct: 529 EAAQTSCGLLGVEWGGLTHSVTKGQGPELMGGAQTPTKQPEEREAGEVELMGVLALSKEE 588
Query: 382 YVAHVKFGPKLAAWLDKEV-EATENEWNEGRNQTVK---ALEDAIEGE-KTEQWRAQGQE 546
++ GP+ A + E EA W + ++ EDA +GE + E+ A GQ
Sbjct: 589 QERSLEAGPRHAGSVKPEASEAFPGAWENRTRKDMERGNTQEDAADGEQREEEETAGGQT 648
Query: 547 LLIQAK--KENVLLQLEAAYRERL 612
L +A+ +E+ L ++ A E L
Sbjct: 649 LAAEAEGDRESELSEVPEAGGEGL 672
>AF141334-1|AAF78765.1| 1076|Homo sapiens placenta apolipoprotein
B48 receptor type 2 protein.
Length = 1076
Score = 32.3 bits (70), Expect = 1.4
Identities = 38/144 (26%), Positives = 58/144 (40%), Gaps = 7/144 (4%)
Frame = +1
Query: 202 EPGKVRLGFIPEEWFQFFHSKTGVTGPYTFGVGLATYLCSKEIYVMEHEYYSGLSLLVMV 381
E + G + EW HS T GP G +E E E L+L
Sbjct: 529 EAAQTSCGLLGVEWGGLTHSVTKGQGPELMGGAQTPTKQPEEREAGEVELMGVLALSKEE 588
Query: 382 YVAHVKFGPKLAAWLDKEV-EATENEWNEGRNQTVK---ALEDAIEGE-KTEQWRAQGQE 546
++ GP+ A + E EA W + ++ EDA +GE + E+ A GQ
Sbjct: 589 QERSLEAGPRHAGSVKPEASEAFPGAWENRTRKDMERGNTQEDAADGEQREEEETAGGQT 648
Query: 547 LLIQAK--KENVLLQLEAAYRERL 612
L +A+ +E+ L ++ A E L
Sbjct: 649 LAAEAEGDRESELSEVPEAGGEGL 672
>AF141333-1|AAF76256.1| 1088|Homo sapiens apolipoprotein B48
receptor protein.
Length = 1088
Score = 32.3 bits (70), Expect = 1.4
Identities = 38/144 (26%), Positives = 58/144 (40%), Gaps = 7/144 (4%)
Frame = +1
Query: 202 EPGKVRLGFIPEEWFQFFHSKTGVTGPYTFGVGLATYLCSKEIYVMEHEYYSGLSLLVMV 381
E + G + EW HS T GP G +E E E L+L
Sbjct: 529 EAAQTSCGLLGVEWGGLTHSVTKGQGPELMGGAQTPTKQPEEREAGEVELMGVLALSKEE 588
Query: 382 YVAHVKFGPKLAAWLDKEV-EATENEWNEGRNQTVK---ALEDAIEGE-KTEQWRAQGQE 546
++ GP+ A + E EA W + ++ EDA +GE + E+ A GQ
Sbjct: 589 QERSLEAGPRHAGSVKPEASEAFPGAWENRTRKDMERGNTQEDAADGEQREEEETAGGQT 648
Query: 547 LLIQAK--KENVLLQLEAAYRERL 612
L +A+ +E+ L ++ A E L
Sbjct: 649 LAAEAEGDRESELSEVPEAGGEGL 672
>AF141332-1|AAF76255.1| 1088|Homo sapiens apolipoprotein B48
receptor protein.
Length = 1088
Score = 32.3 bits (70), Expect = 1.4
Identities = 38/144 (26%), Positives = 58/144 (40%), Gaps = 7/144 (4%)
Frame = +1
Query: 202 EPGKVRLGFIPEEWFQFFHSKTGVTGPYTFGVGLATYLCSKEIYVMEHEYYSGLSLLVMV 381
E + G + EW HS T GP G +E E E L+L
Sbjct: 529 EAAQTSCGLLGVEWGGLTHSVTKGQGPELMGGAQTPTKQPEEREAGEVELMGVLALSKEE 588
Query: 382 YVAHVKFGPKLAAWLDKEV-EATENEWNEGRNQTVK---ALEDAIEGE-KTEQWRAQGQE 546
++ GP+ A + E EA W + ++ EDA +GE + E+ A GQ
Sbjct: 589 QERSLEAGPRHAGSVKPEASEAFPGAWENRTRKDMERGNTQEDAADGEQREEEETAGGQT 648
Query: 547 LLIQAK--KENVLLQLEAAYRERL 612
L +A+ +E+ L ++ A E L
Sbjct: 649 LAAEAEGDRESELSEVPEAGGEGL 672
>J00116-1|AAA51997.1| 456|Homo sapiens COL2A1 protein.
Length = 456
Score = 30.3 bits (65), Expect = 5.8
Identities = 20/48 (41%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Frame = +3
Query: 474 PNRESTGG--RNRGREDGAVARAGTGAPHPGQEGERAPAARGRLQGEA 611
P R+ G NRG E GAV GT P PG G P + +GEA
Sbjct: 15 PGRDGAAGVKGNRG-ETGAVGAPGTPGP-PGSPGPAGPTGKQGDRGEA 60
>AL445686-4|CAI14682.1| 904|Homo sapiens serine/arginine repetitive
matrix 1 protein.
Length = 904
Score = 29.9 bits (64), Expect = 7.7
Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Frame = -2
Query: 463 RSIRSRSLQLPCPTKQPILVRISRE-PHTP*PAVTVRSNIRAPLHRFPCCTGMLPDPHQK 287
RS R R + P P ++ VR R+ H+ P +S +P T LP+P K
Sbjct: 170 RSPRRRKSRSPSPRRRSSPVRRERKRSHSRSPRHRTKSRSPSPAPEKKEKTPELPEPSVK 229
Query: 286 CKDPSHQ 266
K+PS Q
Sbjct: 230 VKEPSVQ 236
>AL445686-3|CAI14683.1| 913|Homo sapiens serine/arginine repetitive
matrix 1 protein.
Length = 913
Score = 29.9 bits (64), Expect = 7.7
Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Frame = -2
Query: 463 RSIRSRSLQLPCPTKQPILVRISRE-PHTP*PAVTVRSNIRAPLHRFPCCTGMLPDPHQK 287
RS R R + P P ++ VR R+ H+ P +S +P T LP+P K
Sbjct: 170 RSPRRRKSRSPSPRRRSSPVRRERKRSHSRSPRHRTKSRSPSPAPEKKEKTPELPEPSVK 229
Query: 286 CKDPSHQ 266
K+PS Q
Sbjct: 230 VKEPSVQ 236
>AL445648-3|CAH73090.1| 904|Homo sapiens serine/arginine repetitive
matrix 1 protein.
Length = 904
Score = 29.9 bits (64), Expect = 7.7
Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Frame = -2
Query: 463 RSIRSRSLQLPCPTKQPILVRISRE-PHTP*PAVTVRSNIRAPLHRFPCCTGMLPDPHQK 287
RS R R + P P ++ VR R+ H+ P +S +P T LP+P K
Sbjct: 170 RSPRRRKSRSPSPRRRSSPVRRERKRSHSRSPRHRTKSRSPSPAPEKKEKTPELPEPSVK 229
Query: 286 CKDPSHQ 266
K+PS Q
Sbjct: 230 VKEPSVQ 236
>AL445648-2|CAH73089.1| 913|Homo sapiens serine/arginine repetitive
matrix 1 protein.
Length = 913
Score = 29.9 bits (64), Expect = 7.7
Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Frame = -2
Query: 463 RSIRSRSLQLPCPTKQPILVRISRE-PHTP*PAVTVRSNIRAPLHRFPCCTGMLPDPHQK 287
RS R R + P P ++ VR R+ H+ P +S +P T LP+P K
Sbjct: 170 RSPRRRKSRSPSPRRRSSPVRRERKRSHSRSPRHRTKSRSPSPAPEKKEKTPELPEPSVK 229
Query: 286 CKDPSHQ 266
K+PS Q
Sbjct: 230 VKEPSVQ 236
>AK128829-1|BAC87629.1| 385|Homo sapiens protein ( Homo sapiens
cDNA FLJ46309 fis, clone TESTI4039744. ).
Length = 385
Score = 29.9 bits (64), Expect = 7.7
Identities = 20/64 (31%), Positives = 24/64 (37%), Gaps = 3/64 (4%)
Frame = +3
Query: 426 GQGXXXXXXXXXXXXXPNRESTGGRNRGREDGAVARAGTGAPH--PGQEGERAP-AARGR 596
G+G P+ GGR R G GAPH G G+R P RGR
Sbjct: 94 GRGAPHLPGGAAGQRRPSPPRRGGRAEAPLTSQAGRPGRGAPHLPDGAAGQRLPQPPRGR 153
Query: 597 LQGE 608
G+
Sbjct: 154 AAGQ 157
>AF419855-1|AAP97290.1| 820|Homo sapiens Ser/Arg-related nuclear
matrix protein protein.
Length = 820
Score = 29.9 bits (64), Expect = 7.7
Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Frame = -2
Query: 463 RSIRSRSLQLPCPTKQPILVRISRE-PHTP*PAVTVRSNIRAPLHRFPCCTGMLPDPHQK 287
RS R R + P P ++ VR R+ H+ P +S +P T LP+P K
Sbjct: 170 RSPRRRKSRSPSPRRRSSPVRRERKRSHSRSPRHRTKSRSPSPAPEKKEKTPELPEPSVK 229
Query: 286 CKDPSHQ 266
K+PS Q
Sbjct: 230 VKEPSVQ 236
>AF048977-1|AAC09321.1| 820|Homo sapiens Ser/Arg-related nuclear
matrix protein protein.
Length = 820
Score = 29.9 bits (64), Expect = 7.7
Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Frame = -2
Query: 463 RSIRSRSLQLPCPTKQPILVRISRE-PHTP*PAVTVRSNIRAPLHRFPCCTGMLPDPHQK 287
RS R R + P P ++ VR R+ H+ P +S +P T LP+P K
Sbjct: 170 RSPRRRKSRSPSPRRRSSPVRRERKRSHSRSPRHRTKSRSPSPAPEKKEKTPELPEPSVK 229
Query: 286 CKDPSHQ 266
K+PS Q
Sbjct: 230 VKEPSVQ 236
>AB065557-1|BAC45258.1| 542|Homo sapiens seven transmembrane helix
receptor protein.
Length = 542
Score = 29.9 bits (64), Expect = 7.7
Identities = 17/43 (39%), Positives = 21/43 (48%)
Frame = +3
Query: 474 PNRESTGGRNRGREDGAVARAGTGAPHPGQEGERAPAARGRLQ 602
P+ +TGGR GR+ G A G + GE ARGR Q
Sbjct: 33 PDEATTGGRAAGRQGGRAAGWQGGKAAGRRGGEARGGARGRGQ 75
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 97,673,558
Number of Sequences: 237096
Number of extensions: 2172098
Number of successful extensions: 13222
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 12809
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13214
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6804036910
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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