Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12b06r
         (679 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    24   1.00 
EF125546-1|ABL73930.1|  237|Tribolium castaneum obstractor C2 pr...    22   4.0  
EF125545-1|ABL73929.1|  274|Tribolium castaneum obstractor C1 pr...    22   4.0  
DQ855488-1|ABH88175.1|  112|Tribolium castaneum chemosensory pro...    21   7.0  
DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired pr...    21   9.3  

>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 24.2 bits (50), Expect = 1.00
 Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = +1

Query: 220 LVQQLVHSSLH--QESLKRLYEVVRSQRLQSSHSCL 321
           L+Q+++  S      +LKR Y+VV     QSS  C+
Sbjct: 51  LLQEIIPKSYFGTTTNLKRFYKVVEKILTQSSFECI 86


>EF125546-1|ABL73930.1|  237|Tribolium castaneum obstractor C2
           protein.
          Length = 237

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = -1

Query: 337 DPLETPGKSDLTADVDFSQLR 275
           DP + PG  D   DVD   L+
Sbjct: 213 DPEDVPGCEDYYKDVDLKALK 233


>EF125545-1|ABL73929.1|  274|Tribolium castaneum obstractor C1
           protein.
          Length = 274

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = -1

Query: 337 DPLETPGKSDLTADVDFSQLR 275
           DP + PG  D   D+D   +R
Sbjct: 213 DPEDVPGCEDYYGDLDLKSIR 233


>DQ855488-1|ABH88175.1|  112|Tribolium castaneum chemosensory
           protein 1 protein.
          Length = 112

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +3

Query: 282 CEKSTSAVKSLLPGVSRGSTTWCF*KALK 368
           C+     +KSL P V RGS   C  + +K
Sbjct: 58  CDPVGRRLKSLAPLVLRGSCPQCTPQEMK 86


>DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired
           protein.
          Length = 311

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = +2

Query: 506 QGWPNKHLHGLSL 544
           QGW N   H LSL
Sbjct: 125 QGWQNSIRHNLSL 137


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 152,138
Number of Sequences: 336
Number of extensions: 3012
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17697850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)