BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fmgV12b06r (679 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPCC613.09 |sen54||tRNA-splicing endonuclease subunit Sen54 |Sch... 29 0.82 SPBC17G9.03c |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr... 27 2.5 SPBC336.01 |fbh1|fdh1, fdh|DNA helicase I|Schizosaccharomyces po... 27 3.3 SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces... 26 4.4 SPBC31F10.11c |cwf4|syf3|complexed with Cdc5 protein Cwf4 |Schiz... 26 4.4 SPAC1782.03 |||microfibrillar-associated protein family protein|... 26 5.8 SPAC6F6.13c |||DUF726 family protein|Schizosaccharomyces pombe|c... 25 7.6 >SPCC613.09 |sen54||tRNA-splicing endonuclease subunit Sen54 |Schizosaccharomyces pombe|chr 3|||Manual Length = 384 Score = 28.7 bits (61), Expect = 0.82 Identities = 13/32 (40%), Positives = 22/32 (68%), Gaps = 1/32 (3%) Frame = -1 Query: 643 LPIHKFEKTEKGWRELLIDIDDTGKLLY-RLS 551 +P H F++ ++G+R ++I I D G + Y RLS Sbjct: 323 MPQHMFQRLKEGYRNIIIAIVDYGVISYIRLS 354 >SPBC17G9.03c |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr 2|||Manual Length = 591 Score = 27.1 bits (57), Expect = 2.5 Identities = 14/35 (40%), Positives = 20/35 (57%) Frame = -1 Query: 541 TQAVKMLIRPPLDSGDRTELEISARSLGVARQLAK 437 TQAVK L+ P+ ++ E+ R AR+LAK Sbjct: 10 TQAVKALVLDPVTGEQVSKTELKKREKQRARELAK 44 >SPBC336.01 |fbh1|fdh1, fdh|DNA helicase I|Schizosaccharomyces pombe|chr 2|||Manual Length = 878 Score = 26.6 bits (56), Expect = 3.3 Identities = 11/33 (33%), Positives = 18/33 (54%) Frame = +3 Query: 414 KPPCSSTLLASCRATPKLLALISNSVLSPESKG 512 + P S TL+ SC ++A+I + P +KG Sbjct: 240 RDPLSQTLITSCTRIHNIVAVIESPYDEPNTKG 272 >SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces pombe|chr 1|||Manual Length = 1727 Score = 26.2 bits (55), Expect = 4.4 Identities = 14/35 (40%), Positives = 17/35 (48%) Frame = -2 Query: 666 LHMNFLMSSPYTSLKKQKKVGESFSLTLMTLESCY 562 ++MNFL S TS KV T M E+CY Sbjct: 440 IYMNFLSESLETSNNNLTKVQAELLSTKMRQEACY 474 >SPBC31F10.11c |cwf4|syf3|complexed with Cdc5 protein Cwf4 |Schizosaccharomyces pombe|chr 2|||Manual Length = 674 Score = 26.2 bits (55), Expect = 4.4 Identities = 9/19 (47%), Positives = 13/19 (68%) Frame = -2 Query: 90 KWEKDLNLWHSILRLWRQF 34 KWE D N W S +R+ R++ Sbjct: 166 KWEPDENCWMSYIRMERRY 184 >SPAC1782.03 |||microfibrillar-associated protein family protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 355 Score = 25.8 bits (54), Expect = 5.8 Identities = 26/92 (28%), Positives = 39/92 (42%) Frame = -1 Query: 622 KTEKGWRELLIDIDDTGKLLYRLSGNETQAVKMLIRPPLDSGDRTELEISARSLGVARQL 443 K K ELL DIDDT + + S E ++ L+R D ELE ++ R + Sbjct: 170 KETKNNNELLNDIDDTDGIDPQ-SEYELWKLRHLLRKKRDKEKSLELEREKMAIEERRLM 228 Query: 442 AKRVDEHGGLALIADYGHEGEKGDTFRAFQKH 347 E L A+ G+K + + QK+ Sbjct: 229 NSEEREAQDLK-DAEASRRGKKKSSMQFLQKY 259 >SPAC6F6.13c |||DUF726 family protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 778 Score = 25.4 bits (53), Expect = 7.6 Identities = 22/47 (46%), Positives = 28/47 (59%), Gaps = 2/47 (4%) Frame = -1 Query: 649 DVLPIHKFE--KTEKGWRELLIDIDDTGKLLYRLSGNETQAVKMLIR 515 +VL I++F+ K EK E I IDDTG+L S N T+AV L R Sbjct: 304 EVLDINEFDVAKFEKHIVET-IQIDDTGELEAGSSAN-TEAVMKLRR 348 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,644,317 Number of Sequences: 5004 Number of extensions: 48878 Number of successful extensions: 131 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 128 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 131 length of database: 2,362,478 effective HSP length: 70 effective length of database: 2,012,198 effective search space used: 311890690 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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