Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12b06r
         (679 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC613.09 |sen54||tRNA-splicing endonuclease subunit Sen54 |Sch...    29   0.82 
SPBC17G9.03c |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr...    27   2.5  
SPBC336.01 |fbh1|fdh1, fdh|DNA helicase I|Schizosaccharomyces po...    27   3.3  
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces...    26   4.4  
SPBC31F10.11c |cwf4|syf3|complexed with Cdc5 protein Cwf4 |Schiz...    26   4.4  
SPAC1782.03 |||microfibrillar-associated protein family protein|...    26   5.8  
SPAC6F6.13c |||DUF726 family protein|Schizosaccharomyces pombe|c...    25   7.6  

>SPCC613.09 |sen54||tRNA-splicing endonuclease subunit Sen54
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 384

 Score = 28.7 bits (61), Expect = 0.82
 Identities = 13/32 (40%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
 Frame = -1

Query: 643 LPIHKFEKTEKGWRELLIDIDDTGKLLY-RLS 551
           +P H F++ ++G+R ++I I D G + Y RLS
Sbjct: 323 MPQHMFQRLKEGYRNIIIAIVDYGVISYIRLS 354


>SPBC17G9.03c |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 591

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = -1

Query: 541 TQAVKMLIRPPLDSGDRTELEISARSLGVARQLAK 437
           TQAVK L+  P+     ++ E+  R    AR+LAK
Sbjct: 10  TQAVKALVLDPVTGEQVSKTELKKREKQRARELAK 44


>SPBC336.01 |fbh1|fdh1, fdh|DNA helicase I|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 878

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +3

Query: 414 KPPCSSTLLASCRATPKLLALISNSVLSPESKG 512
           + P S TL+ SC     ++A+I +    P +KG
Sbjct: 240 RDPLSQTLITSCTRIHNIVAVIESPYDEPNTKG 272


>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1727

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = -2

Query: 666 LHMNFLMSSPYTSLKKQKKVGESFSLTLMTLESCY 562
           ++MNFL  S  TS     KV      T M  E+CY
Sbjct: 440 IYMNFLSESLETSNNNLTKVQAELLSTKMRQEACY 474


>SPBC31F10.11c |cwf4|syf3|complexed with Cdc5 protein Cwf4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 674

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -2

Query: 90  KWEKDLNLWHSILRLWRQF 34
           KWE D N W S +R+ R++
Sbjct: 166 KWEPDENCWMSYIRMERRY 184


>SPAC1782.03 |||microfibrillar-associated protein family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 355

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 26/92 (28%), Positives = 39/92 (42%)
 Frame = -1

Query: 622 KTEKGWRELLIDIDDTGKLLYRLSGNETQAVKMLIRPPLDSGDRTELEISARSLGVARQL 443
           K  K   ELL DIDDT  +  + S  E   ++ L+R   D     ELE    ++   R +
Sbjct: 170 KETKNNNELLNDIDDTDGIDPQ-SEYELWKLRHLLRKKRDKEKSLELEREKMAIEERRLM 228

Query: 442 AKRVDEHGGLALIADYGHEGEKGDTFRAFQKH 347
                E   L   A+    G+K  + +  QK+
Sbjct: 229 NSEEREAQDLK-DAEASRRGKKKSSMQFLQKY 259


>SPAC6F6.13c |||DUF726 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 778

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 22/47 (46%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
 Frame = -1

Query: 649 DVLPIHKFE--KTEKGWRELLIDIDDTGKLLYRLSGNETQAVKMLIR 515
           +VL I++F+  K EK   E  I IDDTG+L    S N T+AV  L R
Sbjct: 304 EVLDINEFDVAKFEKHIVET-IQIDDTGELEAGSSAN-TEAVMKLRR 348


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,644,317
Number of Sequences: 5004
Number of extensions: 48878
Number of successful extensions: 131
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)