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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12b06r
         (679 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0526 + 22944889-22944999,22945207-22945317,22945397-229455...    80   2e-15
09_04_0573 + 18636083-18636237,18637842-18638365,18638420-186385...    33   0.21 
04_04_0385 - 24858580-24858721,24858772-24858850,24859155-248593...    32   0.49 
03_05_0491 - 24868261-24869383,24869482-24869561,24870193-248702...    31   0.64 
07_02_0012 - 11770058-11770770,11770919-11771000,11771064-117710...    29   2.6  
03_05_0571 - 25713519-25714064,25714673-25714804                       29   2.6  
11_01_0186 - 1473100-1473657                                           28   6.0  
04_04_1270 - 32278793-32279095,32279177-32279327,32279427-322796...    28   7.9  

>01_05_0526 +
           22944889-22944999,22945207-22945317,22945397-22945592,
           22946454-22946512,22946761-22946958,22947233-22947341,
           22947431-22947696
          Length = 349

 Score = 79.8 bits (188), Expect = 2e-15
 Identities = 54/168 (32%), Positives = 85/168 (50%)
 Frame = -1

Query: 667 VAHEFFDVLPIHKFEKTEKGWRELLIDIDDTGKLLYRLSGNETQAVKMLIRPPLDSGDRT 488
           +AHEF+D LPIH+F+ T      LL       K     S  E + V+             
Sbjct: 145 IAHEFYDALPIHQFQPTAS----LLF----LSKRCGWASSEELEKVE------------- 183

Query: 487 ELEISARSLGVARQLAKRVDEHGGLALIADYGHEGEKGDTFRAFQKHQVVDPLETPGKSD 308
            +E+  +++ +  Q+A R+   GG ALI DYG +G   D+ +A +KH+ V  L+ PG +D
Sbjct: 184 HIEVCPKAMEITEQIADRISSDGGGALIIDYGKDGIVSDSLQAIRKHKFVHILDNPGSAD 243

Query: 307 LTADVDFSQLRIAASKTPGEENYALVVGPVKQKDFLEQCQGELRLQVL 164
           L+A VDF+ +R +A +   + +   V GP+ Q  FL       R++ L
Sbjct: 244 LSAYVDFASIRHSAKEASDDIS---VHGPMTQSQFLGSLGINFRVEAL 288


>09_04_0573 +
           18636083-18636237,18637842-18638365,18638420-18638529,
           18638639-18638677,18638724-18638764,18638862-18638960,
           18639405-18639576
          Length = 379

 Score = 33.1 bits (72), Expect = 0.21
 Identities = 24/70 (34%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
 Frame = -1

Query: 520 IRPPLDSGDRTELEISARSLGVARQLAKRVDEHGGLALIADYGHEGEKGDTFRA-FQKHQ 344
           IR P   G   EL +++  L +   +     E GGL  IA+YG E  K D  +  F    
Sbjct: 303 IRKPHVWGGEPELLMASHVLRMPITVYMHDKEAGGLIAIAEYGQEYGKEDPIQVLFHGFG 362

Query: 343 VVDPLETPGK 314
             D L+ PGK
Sbjct: 363 HYDALQIPGK 372


>04_04_0385 -
           24858580-24858721,24858772-24858850,24859155-24859302,
           24859939-24860239,24860327-24860407,24860727-24860875,
           24861073-24861215,24861404-24861556,24861664-24861742,
           24861851-24861916
          Length = 446

 Score = 31.9 bits (69), Expect = 0.49
 Identities = 20/65 (30%), Positives = 30/65 (46%)
 Frame = -1

Query: 388 EGEKGDTFRAFQKHQVVDPLETPGKSDLTADVDFSQLRIAASKTPGEENYALVVGPVKQK 209
           EGE  D  ++   H    P  +  K DL+ DV+ S+   A S   GE        P+ ++
Sbjct: 252 EGETDDANKSRTGHDEKIPENSDIKEDLSDDVEKSKEAAAQSVKKGESPSENADDPISRE 311

Query: 208 DFLEQ 194
           DF E+
Sbjct: 312 DFKEE 316


>03_05_0491 -
           24868261-24869383,24869482-24869561,24870193-24870249,
           24870567-24870660,24871013-24871099,24871188-24871347,
           24871440-24871674
          Length = 611

 Score = 31.5 bits (68), Expect = 0.64
 Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
 Frame = -1

Query: 412 ALIADYGHEGEKGDTFRAFQKHQVVDPLETP--GKSDLTADVDFSQLRIAASKTPGEENY 239
           AL A+ GHE  + D+     KH VV  +  P  GKS  T +    Q R   + TPG+  +
Sbjct: 309 ALRAEEGHESSRSDSVSTRPKHVVVGFVGYPNVGKSS-TINALVGQKRTGVTSTPGKTKH 367


>07_02_0012 -
           11770058-11770770,11770919-11771000,11771064-11771072,
           11771630-11771877,11772006-11772183,11772270-11772278
          Length = 412

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 22/69 (31%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
 Frame = -1

Query: 385 GEKGDTFRAFQKHQVVDPLETPGKSDLTADVDFSQLRIAASKTPGEENYALVVG-PVKQK 209
           G +   FRA  +H +  P E+P K     D D    ++A S  P EE      G P    
Sbjct: 209 GRRAAIFRAEPQHPLPPPSESPPK----VDDDNEPPKVAGSTEPAEEEETKQGGDPSPSD 264

Query: 208 DFLEQCQGE 182
           D  E+ +GE
Sbjct: 265 DAQEKKEGE 273


>03_05_0571 - 25713519-25714064,25714673-25714804
          Length = 225

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 16/49 (32%), Positives = 23/49 (46%)
 Frame = +3

Query: 201 KKSFCFTGPTTSA*FSSPGVFEAAIRSCEKSTSAVKSLLPGVSRGSTTW 347
           +K  C   PT    F  PG   +A + C  ST+A  S   G +  +TT+
Sbjct: 51  QKQTCPATPTDLNLFPVPGAAASAAKPCPSSTAAAASGAGGTTTTTTTY 99


>11_01_0186 - 1473100-1473657
          Length = 185

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = +3

Query: 255 GVFEAAIRSCEKSTSAVKSLLPGVSRGSTT 344
           G F+ AI S EKS SAVK    G  + + T
Sbjct: 131 GRFQEAISSLEKSASAVKECRDGFGKSNVT 160


>04_04_1270 -
           32278793-32279095,32279177-32279327,32279427-32279664,
           32279778-32279988,32280067-32280248,32280332-32280448,
           32280828-32282094
          Length = 822

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 12/25 (48%), Positives = 13/25 (52%)
 Frame = +2

Query: 416 TTMLINPFSQLSCYTQASCTDF*LC 490
           T  L  P S + CYT ASC  F  C
Sbjct: 276 TVRLQRPASTIDCYTYASCGPFGYC 300


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,248,380
Number of Sequences: 37544
Number of extensions: 315794
Number of successful extensions: 729
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 717
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 729
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1726796312
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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