Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV12b06r
(679 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_05_0526 + 22944889-22944999,22945207-22945317,22945397-229455... 80 2e-15
09_04_0573 + 18636083-18636237,18637842-18638365,18638420-186385... 33 0.21
04_04_0385 - 24858580-24858721,24858772-24858850,24859155-248593... 32 0.49
03_05_0491 - 24868261-24869383,24869482-24869561,24870193-248702... 31 0.64
07_02_0012 - 11770058-11770770,11770919-11771000,11771064-117710... 29 2.6
03_05_0571 - 25713519-25714064,25714673-25714804 29 2.6
11_01_0186 - 1473100-1473657 28 6.0
04_04_1270 - 32278793-32279095,32279177-32279327,32279427-322796... 28 7.9
>01_05_0526 +
22944889-22944999,22945207-22945317,22945397-22945592,
22946454-22946512,22946761-22946958,22947233-22947341,
22947431-22947696
Length = 349
Score = 79.8 bits (188), Expect = 2e-15
Identities = 54/168 (32%), Positives = 85/168 (50%)
Frame = -1
Query: 667 VAHEFFDVLPIHKFEKTEKGWRELLIDIDDTGKLLYRLSGNETQAVKMLIRPPLDSGDRT 488
+AHEF+D LPIH+F+ T LL K S E + V+
Sbjct: 145 IAHEFYDALPIHQFQPTAS----LLF----LSKRCGWASSEELEKVE------------- 183
Query: 487 ELEISARSLGVARQLAKRVDEHGGLALIADYGHEGEKGDTFRAFQKHQVVDPLETPGKSD 308
+E+ +++ + Q+A R+ GG ALI DYG +G D+ +A +KH+ V L+ PG +D
Sbjct: 184 HIEVCPKAMEITEQIADRISSDGGGALIIDYGKDGIVSDSLQAIRKHKFVHILDNPGSAD 243
Query: 307 LTADVDFSQLRIAASKTPGEENYALVVGPVKQKDFLEQCQGELRLQVL 164
L+A VDF+ +R +A + + + V GP+ Q FL R++ L
Sbjct: 244 LSAYVDFASIRHSAKEASDDIS---VHGPMTQSQFLGSLGINFRVEAL 288
>09_04_0573 +
18636083-18636237,18637842-18638365,18638420-18638529,
18638639-18638677,18638724-18638764,18638862-18638960,
18639405-18639576
Length = 379
Score = 33.1 bits (72), Expect = 0.21
Identities = 24/70 (34%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Frame = -1
Query: 520 IRPPLDSGDRTELEISARSLGVARQLAKRVDEHGGLALIADYGHEGEKGDTFRA-FQKHQ 344
IR P G EL +++ L + + E GGL IA+YG E K D + F
Sbjct: 303 IRKPHVWGGEPELLMASHVLRMPITVYMHDKEAGGLIAIAEYGQEYGKEDPIQVLFHGFG 362
Query: 343 VVDPLETPGK 314
D L+ PGK
Sbjct: 363 HYDALQIPGK 372
>04_04_0385 -
24858580-24858721,24858772-24858850,24859155-24859302,
24859939-24860239,24860327-24860407,24860727-24860875,
24861073-24861215,24861404-24861556,24861664-24861742,
24861851-24861916
Length = 446
Score = 31.9 bits (69), Expect = 0.49
Identities = 20/65 (30%), Positives = 30/65 (46%)
Frame = -1
Query: 388 EGEKGDTFRAFQKHQVVDPLETPGKSDLTADVDFSQLRIAASKTPGEENYALVVGPVKQK 209
EGE D ++ H P + K DL+ DV+ S+ A S GE P+ ++
Sbjct: 252 EGETDDANKSRTGHDEKIPENSDIKEDLSDDVEKSKEAAAQSVKKGESPSENADDPISRE 311
Query: 208 DFLEQ 194
DF E+
Sbjct: 312 DFKEE 316
>03_05_0491 -
24868261-24869383,24869482-24869561,24870193-24870249,
24870567-24870660,24871013-24871099,24871188-24871347,
24871440-24871674
Length = 611
Score = 31.5 bits (68), Expect = 0.64
Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Frame = -1
Query: 412 ALIADYGHEGEKGDTFRAFQKHQVVDPLETP--GKSDLTADVDFSQLRIAASKTPGEENY 239
AL A+ GHE + D+ KH VV + P GKS T + Q R + TPG+ +
Sbjct: 309 ALRAEEGHESSRSDSVSTRPKHVVVGFVGYPNVGKSS-TINALVGQKRTGVTSTPGKTKH 367
>07_02_0012 -
11770058-11770770,11770919-11771000,11771064-11771072,
11771630-11771877,11772006-11772183,11772270-11772278
Length = 412
Score = 29.5 bits (63), Expect = 2.6
Identities = 22/69 (31%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
Frame = -1
Query: 385 GEKGDTFRAFQKHQVVDPLETPGKSDLTADVDFSQLRIAASKTPGEENYALVVG-PVKQK 209
G + FRA +H + P E+P K D D ++A S P EE G P
Sbjct: 209 GRRAAIFRAEPQHPLPPPSESPPK----VDDDNEPPKVAGSTEPAEEEETKQGGDPSPSD 264
Query: 208 DFLEQCQGE 182
D E+ +GE
Sbjct: 265 DAQEKKEGE 273
>03_05_0571 - 25713519-25714064,25714673-25714804
Length = 225
Score = 29.5 bits (63), Expect = 2.6
Identities = 16/49 (32%), Positives = 23/49 (46%)
Frame = +3
Query: 201 KKSFCFTGPTTSA*FSSPGVFEAAIRSCEKSTSAVKSLLPGVSRGSTTW 347
+K C PT F PG +A + C ST+A S G + +TT+
Sbjct: 51 QKQTCPATPTDLNLFPVPGAAASAAKPCPSSTAAAASGAGGTTTTTTTY 99
>11_01_0186 - 1473100-1473657
Length = 185
Score = 28.3 bits (60), Expect = 6.0
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = +3
Query: 255 GVFEAAIRSCEKSTSAVKSLLPGVSRGSTT 344
G F+ AI S EKS SAVK G + + T
Sbjct: 131 GRFQEAISSLEKSASAVKECRDGFGKSNVT 160
>04_04_1270 -
32278793-32279095,32279177-32279327,32279427-32279664,
32279778-32279988,32280067-32280248,32280332-32280448,
32280828-32282094
Length = 822
Score = 27.9 bits (59), Expect = 7.9
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = +2
Query: 416 TTMLINPFSQLSCYTQASCTDF*LC 490
T L P S + CYT ASC F C
Sbjct: 276 TVRLQRPASTIDCYTYASCGPFGYC 300
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,248,380
Number of Sequences: 37544
Number of extensions: 315794
Number of successful extensions: 729
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 717
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 729
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1726796312
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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