BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fmgV12b06r (679 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 01_05_0526 + 22944889-22944999,22945207-22945317,22945397-229455... 80 2e-15 09_04_0573 + 18636083-18636237,18637842-18638365,18638420-186385... 33 0.21 04_04_0385 - 24858580-24858721,24858772-24858850,24859155-248593... 32 0.49 03_05_0491 - 24868261-24869383,24869482-24869561,24870193-248702... 31 0.64 07_02_0012 - 11770058-11770770,11770919-11771000,11771064-117710... 29 2.6 03_05_0571 - 25713519-25714064,25714673-25714804 29 2.6 11_01_0186 - 1473100-1473657 28 6.0 04_04_1270 - 32278793-32279095,32279177-32279327,32279427-322796... 28 7.9 >01_05_0526 + 22944889-22944999,22945207-22945317,22945397-22945592, 22946454-22946512,22946761-22946958,22947233-22947341, 22947431-22947696 Length = 349 Score = 79.8 bits (188), Expect = 2e-15 Identities = 54/168 (32%), Positives = 85/168 (50%) Frame = -1 Query: 667 VAHEFFDVLPIHKFEKTEKGWRELLIDIDDTGKLLYRLSGNETQAVKMLIRPPLDSGDRT 488 +AHEF+D LPIH+F+ T LL K S E + V+ Sbjct: 145 IAHEFYDALPIHQFQPTAS----LLF----LSKRCGWASSEELEKVE------------- 183 Query: 487 ELEISARSLGVARQLAKRVDEHGGLALIADYGHEGEKGDTFRAFQKHQVVDPLETPGKSD 308 +E+ +++ + Q+A R+ GG ALI DYG +G D+ +A +KH+ V L+ PG +D Sbjct: 184 HIEVCPKAMEITEQIADRISSDGGGALIIDYGKDGIVSDSLQAIRKHKFVHILDNPGSAD 243 Query: 307 LTADVDFSQLRIAASKTPGEENYALVVGPVKQKDFLEQCQGELRLQVL 164 L+A VDF+ +R +A + + + V GP+ Q FL R++ L Sbjct: 244 LSAYVDFASIRHSAKEASDDIS---VHGPMTQSQFLGSLGINFRVEAL 288 >09_04_0573 + 18636083-18636237,18637842-18638365,18638420-18638529, 18638639-18638677,18638724-18638764,18638862-18638960, 18639405-18639576 Length = 379 Score = 33.1 bits (72), Expect = 0.21 Identities = 24/70 (34%), Positives = 32/70 (45%), Gaps = 1/70 (1%) Frame = -1 Query: 520 IRPPLDSGDRTELEISARSLGVARQLAKRVDEHGGLALIADYGHEGEKGDTFRA-FQKHQ 344 IR P G EL +++ L + + E GGL IA+YG E K D + F Sbjct: 303 IRKPHVWGGEPELLMASHVLRMPITVYMHDKEAGGLIAIAEYGQEYGKEDPIQVLFHGFG 362 Query: 343 VVDPLETPGK 314 D L+ PGK Sbjct: 363 HYDALQIPGK 372 >04_04_0385 - 24858580-24858721,24858772-24858850,24859155-24859302, 24859939-24860239,24860327-24860407,24860727-24860875, 24861073-24861215,24861404-24861556,24861664-24861742, 24861851-24861916 Length = 446 Score = 31.9 bits (69), Expect = 0.49 Identities = 20/65 (30%), Positives = 30/65 (46%) Frame = -1 Query: 388 EGEKGDTFRAFQKHQVVDPLETPGKSDLTADVDFSQLRIAASKTPGEENYALVVGPVKQK 209 EGE D ++ H P + K DL+ DV+ S+ A S GE P+ ++ Sbjct: 252 EGETDDANKSRTGHDEKIPENSDIKEDLSDDVEKSKEAAAQSVKKGESPSENADDPISRE 311 Query: 208 DFLEQ 194 DF E+ Sbjct: 312 DFKEE 316 >03_05_0491 - 24868261-24869383,24869482-24869561,24870193-24870249, 24870567-24870660,24871013-24871099,24871188-24871347, 24871440-24871674 Length = 611 Score = 31.5 bits (68), Expect = 0.64 Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 2/60 (3%) Frame = -1 Query: 412 ALIADYGHEGEKGDTFRAFQKHQVVDPLETP--GKSDLTADVDFSQLRIAASKTPGEENY 239 AL A+ GHE + D+ KH VV + P GKS T + Q R + TPG+ + Sbjct: 309 ALRAEEGHESSRSDSVSTRPKHVVVGFVGYPNVGKSS-TINALVGQKRTGVTSTPGKTKH 367 >07_02_0012 - 11770058-11770770,11770919-11771000,11771064-11771072, 11771630-11771877,11772006-11772183,11772270-11772278 Length = 412 Score = 29.5 bits (63), Expect = 2.6 Identities = 22/69 (31%), Positives = 30/69 (43%), Gaps = 1/69 (1%) Frame = -1 Query: 385 GEKGDTFRAFQKHQVVDPLETPGKSDLTADVDFSQLRIAASKTPGEENYALVVG-PVKQK 209 G + FRA +H + P E+P K D D ++A S P EE G P Sbjct: 209 GRRAAIFRAEPQHPLPPPSESPPK----VDDDNEPPKVAGSTEPAEEEETKQGGDPSPSD 264 Query: 208 DFLEQCQGE 182 D E+ +GE Sbjct: 265 DAQEKKEGE 273 >03_05_0571 - 25713519-25714064,25714673-25714804 Length = 225 Score = 29.5 bits (63), Expect = 2.6 Identities = 16/49 (32%), Positives = 23/49 (46%) Frame = +3 Query: 201 KKSFCFTGPTTSA*FSSPGVFEAAIRSCEKSTSAVKSLLPGVSRGSTTW 347 +K C PT F PG +A + C ST+A S G + +TT+ Sbjct: 51 QKQTCPATPTDLNLFPVPGAAASAAKPCPSSTAAAASGAGGTTTTTTTY 99 >11_01_0186 - 1473100-1473657 Length = 185 Score = 28.3 bits (60), Expect = 6.0 Identities = 14/30 (46%), Positives = 17/30 (56%) Frame = +3 Query: 255 GVFEAAIRSCEKSTSAVKSLLPGVSRGSTT 344 G F+ AI S EKS SAVK G + + T Sbjct: 131 GRFQEAISSLEKSASAVKECRDGFGKSNVT 160 >04_04_1270 - 32278793-32279095,32279177-32279327,32279427-32279664, 32279778-32279988,32280067-32280248,32280332-32280448, 32280828-32282094 Length = 822 Score = 27.9 bits (59), Expect = 7.9 Identities = 12/25 (48%), Positives = 13/25 (52%) Frame = +2 Query: 416 TTMLINPFSQLSCYTQASCTDF*LC 490 T L P S + CYT ASC F C Sbjct: 276 TVRLQRPASTIDCYTYASCGPFGYC 300 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 17,248,380 Number of Sequences: 37544 Number of extensions: 315794 Number of successful extensions: 729 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 717 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 729 length of database: 14,793,348 effective HSP length: 79 effective length of database: 11,827,372 effective search space used: 1726796312 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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