Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12b06r
         (679 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_18498| Best HMM Match : PX (HMM E-Value=1.6e-15)                    30   1.5  
SB_27973| Best HMM Match : Fe-ADH (HMM E-Value=5.6e-06)                29   4.6  
SB_24595| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.0  

>SB_18498| Best HMM Match : PX (HMM E-Value=1.6e-15)
          Length = 402

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 17/42 (40%), Positives = 22/42 (52%)
 Frame = -1

Query: 592 IDIDDTGKLLYRLSGNETQAVKMLIRPPLDSGDRTELEISAR 467
           ID+D TG   Y +  N T  V   +    +SGD  E EISA+
Sbjct: 270 IDVDTTG---YNIMNNSTNKVMKWLSAMTESGDYNEEEISAQ 308


>SB_27973| Best HMM Match : Fe-ADH (HMM E-Value=5.6e-06)
          Length = 324

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 16/54 (29%), Positives = 28/54 (51%)
 Frame = -1

Query: 532 VKMLIRPPLDSGDRTELEISARSLGVARQLAKRVDEHGGLALIADYGHEGEKGD 371
           +K  +R P D   R+++ +++   G+    A  + EH  L    DYG +G+ GD
Sbjct: 144 MKRSVRDPHDLEARSQMHLASVYAGIGFGNADGI-EHNCLDDYDDYGDDGDNGD 196


>SB_24595| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 94

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 11/21 (52%), Positives = 17/21 (80%)
 Frame = -2

Query: 444 WLKGLMSMVV*RSLLIMDMRV 382
           WLKGLM++V    L++MD++V
Sbjct: 32  WLKGLMTVVRLMDLMLMDVKV 52


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,936,508
Number of Sequences: 59808
Number of extensions: 372435
Number of successful extensions: 2852
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2800
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2852
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1745338465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)