Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12b06r
         (679 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g28700.1 68416.m03581 expressed protein contains Pfam PF02636...   113   8e-26
At5g18350.1 68418.m02159 disease resistance protein (TIR-NBS-LRR...    34   0.099
At3g57810.2 68416.m06445 OTU-like cysteine protease family prote...    31   0.70 
At3g57810.1 68416.m06444 OTU-like cysteine protease family prote...    31   0.70 
At1g55340.1 68414.m06322 expressed protein                             28   6.5  

>At3g28700.1 68416.m03581 expressed protein contains Pfam PF02636:
           Uncharacterized ACR, COG1565
          Length = 471

 Score =  113 bits (273), Expect = 8e-26
 Identities = 61/173 (35%), Positives = 99/173 (57%), Gaps = 5/173 (2%)
 Frame = -1

Query: 667 VAHEFFDVLPIHKFEKTEKGWRELLIDIDDTGKLLYRLSGNETQAVKMLIR-----PPLD 503
           +AHEF+D LP+H+F+K+ +GW E ++D+ +  K  + LS   T A   L++      P +
Sbjct: 242 IAHEFYDALPVHQFQKSTRGWCEKMVDVGEDSKFRFVLSPQPTPAALYLMKRCTWATPEE 301

Query: 502 SGDRTELEISARSLGVARQLAKRVDEHGGLALIADYGHEGEKGDTFRAFQKHQVVDPLET 323
                 +EIS +S+ + +++AKR+   GG ALI DYG      D+ +A +KH+ V+ L+ 
Sbjct: 302 REKMEHVEISPKSMDLTQEMAKRIGSDGGGALIIDYGMNAIISDSLQAIRKHKFVNILDD 361

Query: 322 PGKSDLTADVDFSQLRIAASKTPGEENYALVVGPVKQKDFLEQCQGELRLQVL 164
           PG +DL+A VDF  ++ +A +    EN + V GP+ Q  FL       R+  L
Sbjct: 362 PGSADLSAYVDFPSIKHSAEE--ASENVS-VHGPMTQSQFLGSLGINFRVDAL 411


>At5g18350.1 68418.m02159 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1193

 Score = 33.9 bits (74), Expect = 0.099
 Identities = 17/72 (23%), Positives = 34/72 (47%)
 Frame = -1

Query: 652 FDVLPIHKFEKTEKGWRELLIDIDDTGKLLYRLSGNETQAVKMLIRPPLDSGDRTELEIS 473
           F+   + K E+ ++ WR+ LID+ +    +YR+   E+  +  +    LD  + T     
Sbjct: 131 FETTCVGKTEEVKQSWRQALIDVSNIVGEVYRIWSKESDLIDKIAEDVLDELNYTMSRDF 190

Query: 472 ARSLGVARQLAK 437
              +G+ R + K
Sbjct: 191 DGYVGIGRHMRK 202


>At3g57810.2 68416.m06445 OTU-like cysteine protease family protein
           contains Pfam profile PF02338: OTU-like cysteine
           protease
          Length = 317

 Score = 31.1 bits (67), Expect = 0.70
 Identities = 19/53 (35%), Positives = 27/53 (50%)
 Frame = -1

Query: 520 IRPPLDSGDRTELEISARSLGVARQLAKRVDEHGGLALIADYGHEGEKGDTFR 362
           IR P   G   EL +++  L +   +  + D+ GGL  IA+YG E  K D  R
Sbjct: 239 IRDPHVWGGEPELFMASHVLQMPITVYMKDDKAGGLISIAEYGQEYGKDDPIR 291


>At3g57810.1 68416.m06444 OTU-like cysteine protease family protein
           contains Pfam profile PF02338: OTU-like cysteine
           protease
          Length = 317

 Score = 31.1 bits (67), Expect = 0.70
 Identities = 19/53 (35%), Positives = 27/53 (50%)
 Frame = -1

Query: 520 IRPPLDSGDRTELEISARSLGVARQLAKRVDEHGGLALIADYGHEGEKGDTFR 362
           IR P   G   EL +++  L +   +  + D+ GGL  IA+YG E  K D  R
Sbjct: 239 IRDPHVWGGEPELFMASHVLQMPITVYMKDDKAGGLISIAEYGQEYGKDDPIR 291


>At1g55340.1 68414.m06322 expressed protein
          Length = 205

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -3

Query: 257 SW*RELCTSCWTSKAKRFFRTMPRGIKAAGS 165
           +W  +LC   +  + K+  +  PRG+KA GS
Sbjct: 169 AWLSDLCKERYEVREKKTSKKRPRGLKAMGS 199


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,989,371
Number of Sequences: 28952
Number of extensions: 260197
Number of successful extensions: 644
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 637
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 642
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1428369392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)